BAC Information

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BAC

Clone NameB6Ng01-049A20
Chromosome1 (Build37)
Map Location 115,167,424 - 115,289,315
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666615, LOC666635
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049A20.bB6Ng01-049A20.g
ACCDH873424DH873425
length1,1391,089
definitionDH873424|Mus musculus domesticus DNA, BAC clone: B6Ng01-049A20, 5' end.DH873425|Mus musculus domesticus DNA, BAC clone: B6Ng01-049A20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,167,424 - 115,168,615)(115,288,214 - 115,289,315)
sequence
gaattcaaaaaattagactccagagaaccaaataaccctattaaaaaatg
gggaacagagctaaacacagaatttccagctgaggaaacacaaagggctg
atatgaacctaaagaaatgttcaacattgttagtcatcaaggaaatgtta
atcataacttagctactcttaatgtttatttttgagtatgtacctagctt
tgtatcaagcatttcaactagagcaaacactctgtatctgcttaatccaa
ttccagtgagcagtactcagaacactaccacatgaaacagcactgagctt
ctgaatttcgtggtgagtcaaagactcctcgaaccacagttgccttccag
tttaagcagcgacactgtgttacctgacattctctttccatataaaccac
aggtgctcatcagcttttctaaggagtaggaatcctacaagctgggtcct
gcttggaccagattcctctgtcaaagcatctgttctcctttgaatcttgg
ttaccattgttttcatccaagtaagtcatcttcagttttaggtttccctt
acagatgcaaaaaatgcataatcaatctttttccatcataaaaacactac
atggtcagtctatcacactgagaaaatataaaagattagaaaatcaccac
atacaggccaccgcagaaaagaaaatgggattacctactgtaaattatgg
gcaggctctaccttctttagtcggaggatgccaacatttctgttggttgt
ctcctatcctctctttgtctgtatgtagacatggtgatgacatggccttg
ctcttgtctagctggatcctatgtgttggagttcactaagttttatgatc
tttacaagatcagcaagggcatgtatgagtgccaagcactcttggatcat
gggattttttttctattttattttactcatgatagtgctatactgtgtag
tcatctgatactgtcttgctgatagtatgacttcattgactcttgtgttg
gagtcttgcagagggagtggcataatagaagtttggcttgtgaatgaatc
agcctgtggagagagtacctgccgaagcctttggtcttataggttccgct
atggacgaatgaataaactccttctgagttgcagtcaag
gaattctggggcactgaactgaggttgcatgttacgaacacaaccctagg
ctctccatagcttttttgtgtgtcaaggggagcagtgtgttcatttgtaa
gtcatagtgtatgtggaggtcagagaacaacttacctgagtcagttttct
ccttttgctctgtgggttctgggaattgaactcagattaccagtcttgtt
ggaaagcatcattctggccttactgttttttttgttttgttttgtttttt
aagttggccatctaaatctgctgtcttctgacgtctgacaactcacagcc
ttctccactgctcatatcatgcatggcttcattactcttgtcatggactg
tatttcatgatcaatctatacttatttttaagatttttattatttgaact
tatttacaggattcaatggatattactttctacttgtaaatattgaaaaa
tattctattaaaacaatgaacagttttactcttggttaattttcacttct
tagggatttcagcaataaatgagttagttaaatcagatacacacacacac
acacacacacacacacacacacacacacacacacacacacacaaagtgga
tgggtgggggagatattgatatgctccaaaggagatataacttgcagaaa
aacttggaaaaatttatagttattcatgaactctctatcttaattctccc
atcatagtaaagaatttaattgtggacctacacctggtcaaagtgacagt
gaacaatagaacatctctgacacatccccaccaatcccaagtctcaagga
ccatcatgaaaggtagcagaaatttgccaaaactaaagggacaggggagt
acagaagttgtgcagcattttatgtgtatgagtcttatgattttattggc
aactgcaagccagtgaacattctattacaggcaagatcatgagtctaacc
ctcataaggagctttagcatagttggtcctgagcaaagttcataatgagg
gagctcttaagtgaccatgttgggatgtcccaccaatctcgatatgaggt
aacaaatcaaatgggaagtttttttcaaatgaaaaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_115167424_115168615
seq2: B6Ng01-049A20.b_30_1168

seq1  GAATTCAAAAAATTAGACTCCAGAGAACCAAATAACCCTATTAAAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAAAATTAGACTCCAGAGAACCAAATAACCCTATTAAAAAATG  50

seq1  GGGAACAGAGCTAAACACAGAATTTCCAGCTGAGGAAACACAAAGGGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACAGAGCTAAACACAGAATTTCCAGCTGAGGAAACACAAAGGGCTG  100

seq1  ATATGAACCTAAAGAAATGTTCAACATTGTTAGTCATCAAGGAAATGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAACCTAAAGAAATGTTCAACATTGTTAGTCATCAAGGAAATGTTA  150

seq1  ATCATAACTTAGCTACTCTTAATGTTTATTTTTGAGTATGTACCTAGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAACTTAGCTACTCTTAATGTTTATTTTTGAGTATGTACCTAGCTT  200

seq1  TGTATCAAGCATTTCAACTAGAGCAAACACTCTGTATCTGCTTAATCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCAAGCATTTCAACTAGAGCAAACACTCTGTATCTGCTTAATCCAA  250

seq1  TTCCAGTGAGCAGTACTCAGAACACTACCACATGAAACAGCACTGAGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTGAGCAGTACTCAGAACACTACCACATGAAACAGCACTGAGCTT  300

seq1  CTGAATTTCGTGGTGAGTCAAAGACTCCTCGAACCACAGTTGCCTTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTTCGTGGTGAGTCAAAGACTCCTCGAACCACAGTTGCCTTCCAG  350

seq1  TTTAAGCAGCGACACTGTGTTACCTGACATTCTCTTTCCATATAAACCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCAGCGACACTGTGTTACCTGACATTCTCTTTCCATATAAACCAC  400

seq1  AGGTGCTCATCAGCTTTTCTAAGGAGTAGGAATCCTACAAGCTGGGTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCTCATCAGCTTTTCTAAGGAGTAGGAATCCTACAAGCTGGGTCCT  450

seq1  GCTTGGACCAGATTCCTCTGTCAAAGCATCTGTTCTCCTTTGAATCTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGACCAGATTCCTCTGTCAAAGCATCTGTTCTCCTTTGAATCTTGG  500

seq1  TTACCATTGTTTTCATCCAAGTAAGTCATCTTCAGTTTTAGGTTTCCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCATTGTTTTCATCCAAGTAAGTCATCTTCAGTTTTAGGTTTCCCTT  550

seq1  ACAGATGCAAAAAATGCATAATCAATCTTTTTCCATCATAAAAACACTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATGCAAAAAATGCATAATCAATCTTTTTCCATCATAAAAACACTAC  600

seq1  ATGGTCAGTCTATCACACTGAGAAAATATAAAAGATTAGAAAATCACCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCAGTCTATCACACTGAGAAAATATAAAAGATTAGAAAATCACCAC  650

seq1  ATACAGGCCACCGCAGAAAAGAAAATGGGATTACCTACTGTAAATTATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGCCACCGCAGAAAAGAAAATGGGATTACCTACTGTAAATTATGG  700

seq1  GCAGGCTCTACCTTCTTTAGTCGGAGGATGCCAACATTTCTGTTGGTTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTCTACCTTCTTTAGTCGGAGGATGCCAACATTTCTGTTGGTTGT  750

seq1  CTCCTATCCTCTCTTTGTCTGTATGTAGACATGGTGATGACATGGCCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTATCCTCTCTTTGTCTGTATGTAGACATGGTGATGACATGGCCTTG  800

seq1  CTCTTGTCTAGCTGGATCCTATGTGTTGGAGTTCACTAAGTTTTATGATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTCTAGCTGGATCCTATGTGTTGGAGTTCACTAAGTTTTATGATC  850

seq1  TTTACAAGATCAGCAAGGGCATGTATGAGTGCCAAGCCAACTCTTGGATC  900
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  TTTACAAGATCAGCAAGGGCATGTATGAGTGCCAAGC--ACTCTTGGATC  898

seq1  ATGGGGAATTTTTTTTTCCTATTTTATTTTTAACCTCATTGTATAGTTGC  950
      |||||  |||||||||  ||||||||||||    |||||   |||| |||
seq2  ATGGG--ATTTTTTTT--CTATTTTATTTT---ACTCAT--GATAG-TGC  938

seq1  TATAACTTGTGGTAGTTCATCTTGATTACTGTCTTTGTCTGAATAGGTAT  1000
      ||||   ||| |||| ||||| ||| |||||||||   ||| ||| ||||
seq2  TATA--CTGT-GTAG-TCATC-TGA-TACTGTCTT--GCTG-ATA-GTAT  978

seq1  GACTTCCATTGACTCTTGTGTTTGAAGTCTTGGCCAGAGGGAGTGGCATT  1050
      ||||| |||||||||||||| ||| |||||||  ||||||||||||||| 
seq2  GACTT-CATTGACTCTTGTG-TTGGAGTCTTG--CAGAGGGAGTGGCATA  1024

seq1  ATTAGGAAGTATGGTCTTGTTGAAGTAGATACAGCCTTGTTGGAAGAAGT  1100
      ||   ||||| ||| |||| ||||   ||  ||||||   ||||   |||
seq2  AT--AGAAGTTTGG-CTTG-TGAA--TGAATCAGCCT--GTGGAGAGAGT  1066

seq1  ATGTCACTGTGCAGAGAGTCTTTTTGGTCATATATATGTTCAGGCTATGG  1150
      |        ||| || || |  |||||||   |||| ||||  |||||||
seq2  A------CCTGCCGA-AGCC--TTTGGTC--TTATAGGTTC-CGCTATGG  1104

seq1  ACAGTATAGAATAAACACTCCTTCTGATGTCTGCAGTTCAAG  1192
      || | || ||||||  ||||||||||| || ||||| |||||
seq2  AC-GAAT-GAATAA--ACTCCTTCTGA-GT-TGCAG-TCAAG  1139

seq1: chr1_115288214_115289315
seq2: B6Ng01-049A20.g_67_1155 (reverse)

seq1  TCTTTTTTCCTTTTTAAAAATAACTTCCCATTTCTAATTTGTTCTACTTT  50
      |||||||||   ||| |||| |||||||||||  | ||||||  |||  |
seq2  TCTTTTTTC--ATTTGAAAAAAACTTCCCATT--TGATTTGT--TAC-CT  43

seq1  CATACTCAGAATTGTGTGGACATCCCCACATAGTTCACCTAAGAGCCTCC  100
      ||||   ||| | ||| ||||||||| |||| | |||| |||||| ||||
seq2  CATATCGAGATTGGTG-GGACATCCCAACAT-GGTCACTTAAGAG-CTCC  90

seq1  CTCATTATGAAAACTCTGCTCAGAACCAACTATTGCCTAAAGCTCCTTAT  150
      |||||||||  |||| ||||||| |||||||||   ||||||||||||||
seq2  CTCATTATG--AACTTTGCTCAGGACCAACTAT--GCTAAAGCTCCTTAT  136

seq1  GAGGGTTAGGACTCATGATCTTGGCTGTAATAGAATGTCAACTGGCTTTG  200
      |||||||| |||||||||||||| ||||||||||||||  |||||| |||
seq2  GAGGGTTA-GACTCATGATCTTGCCTGTAATAGAATGTTCACTGGC-TTG  184

seq1  CAGCTGCCATATAAACTCATAAGACTCAATCACCATAAAATGCTGCACAA  250
      ||| ||||| ||||| ||||||||||||  || |||||||||||||||||
seq2  CAGTTGCCA-ATAAAATCATAAGACTCATACA-CATAAAATGCTGCACAA  232

seq1  CTCTGGTACT-CCCTGT-CCTTTAGTTTTGGCATATTTCTGCTCCCTTTC  298
      ||   ||||| |||||| ||||||||||||||| ||||||||| ||||||
seq2  CTTCTGTACTCCCCTGTCCCTTTAGTTTTGGCAAATTTCTGCTACCTTTC  282

seq1  ATGATGGTCCTTGAGACTTGGGATTGGT-GGGATGTGTCAGAGATGTTCC  347
      |||||||||||||||||||||||||||| ||||||||||||||||||| |
seq2  ATGATGGTCCTTGAGACTTGGGATTGGTGGGGATGTGTCAGAGATGTT-C  331

seq1  TATTGTTCACTGTCACTTTGACCAGTTGTAGGTCCAC-ATTTAATTCTTT  396
      ||||||||||||||||||||||||| ||||||||||| ||| ||||||||
seq2  TATTGTTCACTGTCACTTTGACCAGGTGTAGGTCCACAATTAAATTCTTT  381

seq1  ACTATGATGGGAGAATTAAGATAGAGAGTTCATGAATAACTATAAATTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGATGGGAGAATTAAGATAGAGAGTTCATGAATAACTATAAATTTT  431

seq1  T-CAAGTTTTTCTGCAAGTTATATCTCCTTTGGAGCATATCAATATCT-C  494
      | |||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCCAAGTTTTTCTGCAAGTTATATCTCCTTTGGAGCATATCAATATCTCC  481

seq1  CCCACCCATCCACTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCATCCACTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  531

seq1  GTGTGTGTGTGTGTGTGTGTATCTGATTTAACTAACTCATTTATTGCTGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTATCTGATTTAACTAACTCATTTATTGCTGA  581

seq1  AATCCCTAAGAAGTGAAAATTAACCAAGAGTAAAACTGTTCATTGTTTTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTAAGAAGTGAAAATTAACCAAGAGTAAAACTGTTCATTGTTTTA  631

seq1  ATAGAATATTTTTCAATATTTACAAGTAGAAAGTAATATCCATTGAATCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATATTTTTCAATATTTACAAGTAGAAAGTAATATCCATTGAATCC  681

seq1  TGTAAATAAGTTCAAATAATAAAAATCTTAAAAATAAGTATAGATTGATC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATAAGTTCAAATAATAAAAATCTTAAAAATAAGTATAGATTGATC  731

seq1  ATGAAATACAGTCCATGACAAGAGTAATGAAGCCATGCATGATATGAGCA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATACAGTCCATGACAAGAGTAATGAAGCCATGCATGATATGAGCA  781

seq1  GTGGAGAAGGCTGTGAGTTGTCAGACGTCAGAAGACAGCAGATTTAGATG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGAAGGCTGTGAGTTGTCAGACGTCAGAAGACAGCAGATTTAGATG  831

seq1  GCCAACTTAAAAAACAAAACAAAACAAAAAAAACAGTAAGGCCAGAATGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTTAAAAAACAAAACAAAACAAAAAAAACAGTAAGGCCAGAATGA  881

seq1  TGCTTTCCAACAAGACTGGTAATCTGAGTTCAATTCCCAGAACCCACAGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCCAACAAGACTGGTAATCTGAGTTCAATTCCCAGAACCCACAGA  931

seq1  GCAAAAGGAGAAAACTGACTCAGGTAAGTTGTTCTCTGACCTCCACATAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGGAGAAAACTGACTCAGGTAAGTTGTTCTCTGACCTCCACATAC  981

seq1  ACTATGACTTACAAATGAACACACTGCTCCCCTTGACACACAAAAAAGCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGACTTACAAATGAACACACTGCTCCCCTTGACACACAAAAAAGCT  1031

seq1  ATGGAGAGCCTAGGGTTGTGTTCGTAACATGCAACCTCAGTTCAGTGCCC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAGCCTAGGGTTGTGTTCGTAACATGCAACCTCAGTTCAGTGCCC  1081

seq1  CAGAATTC  1102
      ||||||||
seq2  CAGAATTC  1089