BAC Information

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BAC

Clone NameB6Ng01-049E21
Chromosome1 (Build37)
Map Location 100,122,939 - 100,123,907
singlet/doubletsinglet
Overlap genenone
Upstream geneEG634331, EG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823
Downstream geneLOC666153, LOC100040887, Slco6d1, LOC100041868, EG666182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049E21.bB6Ng01-049E21.g
ACCDH873608DH873609
length964790
definitionDH873608|Mus musculus domesticus DNA, BAC clone: B6Ng01-049E21, 5' end.DH873609|Mus musculus domesticus DNA, BAC clone: B6Ng01-049E21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctggctgttgcttccccatagaaaatgaatctctttgctgttcag
tgtggagaacagcatcatatgtaggtcagtgtatgacattctatataaag
ttggaaggacaatagagaatccattgcccacccatgctagggtttctatg
ttgtcttcaaacaacattactgataaaagtctcaccacttacaagtggct
ttgcgataaaaacaagctggaaacaaacactttatcttttcccctgtggt
tatttggtaacaacccgcagagatgtattcatttttataaatcaattgca
gatctgaaagccttatggccttctcctccaggttcttcagaaaattcctc
tttcacaatacaaaagctgtaacaaagctttttatttatttatttttctg
taaggcactgtttaaaaaaagtagactgccacaataattctttttgctgt
tgttgtttttaaatatttttcattttatctttatttattcactttacatc
ctgctcatttcctctcctctgggtcacccccctccaactacccttcctgc
cttcccttgtcctctaagagagtgggtgcttctttgggtatccaaccacc
ctgtcacatcaattctttgcaggactagctacatcctctcccattgaggc
tagacaaggcagtccagctaaaagaacttatcccacagataggtaacagc
ttttgggatagcctctcttccagtttttcgtgaccttcatgaagaccaag
ctgtatatcttctacatctgtgcagggggtggggcgaggtccaccctgtg
tatgcactttggttagtggttcagtcttttgaaagccccaagatccagtg
agtgactctgttggtcttcctgtggagtttctatctccttcgggcttgca
acccttctccaactctccatagagttaccaagtttcatcacttgcttatg
gcacttctgcatcc

gaattcaatcttaaaaggcacttataataaagagagcacatggatccatc
cactagactaactcgggaatgaaaaatttagagagcgccccagactccag
gagcgagtttaggcatccctgcctaacaaactgactcgaccggagtgccg
tggcaagaatgaagtttctccactttgaaatggtgttgggtttctgggct
aatatccacttatcagtgagtacatattgtgagagttcctgctaaacaca
ttaaactcaagagaacgaagaccaaagtgtggatactttgccccttctta
gaataggaaacaaaacacccatggaaggagttacagagacaaaatttgga
agtgtgacgaaaggatggacaatctagtgattgccatatccagagttcca
tcccatgatcagcttccaaacgctgacaccattgcatacactagcaagat
attgctgaaaggaccctgatatagctgtctcttgtgagactatgccaggg
cctagcaaacacagaagtggatgctcacagtcagttattgaatggaccac
agggcccccaatggaggaactagaaaaagcacccaagtaactaaagggaa
ctgcaaccctataggtggaacaacaatatgaactaagcagtaccccggag
ctcttgtctctagctgtatatgtatcaaaagatggcctagtcggccatca
ttggaaagagaggcccattggacttgcaaactttatatgccccagtacag
ggaacgccagggccaaaaaggggagtgggtgggtagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_100122939_100123907
seq2: B6Ng01-049E21.b_46_1009

seq1  GAATTCTGGCTGTTGCTTCCCCATAGAAAATGAATCTCTTTGCTGTTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGCTGTTGCTTCCCCATAGAAAATGAATCTCTTTGCTGTTCAG  50

seq1  TGTGGAGAACAGCATCATATGTAGGTCAGTGTATGACATTCTATATAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGAACAGCATCATATGTAGGTCAGTGTATGACATTCTATATAAAG  100

seq1  TTGGAAGGACAATAGAGAATCCATTGCCCACCCATGCTAGGGTTTCTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGGACAATAGAGAATCCATTGCCCACCCATGCTAGGGTTTCTATG  150

seq1  TTGTCTTCAAACAACATTACTGATAAAAGTCTCACCACTTACAAGTGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTCAAACAACATTACTGATAAAAGTCTCACCACTTACAAGTGGCT  200

seq1  TTGCGATAAAAACAAGCTGGAAACAAACACTTTATCTTTTCCCCTGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGATAAAAACAAGCTGGAAACAAACACTTTATCTTTTCCCCTGTGGT  250

seq1  TATTTGGTAACAACCCGCAGAGATGTATTCATTTTTATAAATCAATTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGGTAACAACCCGCAGAGATGTATTCATTTTTATAAATCAATTGCA  300

seq1  GATCTGAAAGCCTTATGGCCTTCTCCTCCAGGTTCTTCAGAAAATTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGAAAGCCTTATGGCCTTCTCCTCCAGGTTCTTCAGAAAATTCCTC  350

seq1  TTTCACAATACAAAAGCTGTAACAAAGCTTTTTATTTATTTATTTTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAATACAAAAGCTGTAACAAAGCTTTTTATTTATTTATTTTTCTG  400

seq1  TAAGGCACTGTTTAAAAAAAGTAGACTGCCACAATAATTCTTTTTGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCACTGTTTAAAAAAAGTAGACTGCCACAATAATTCTTTTTGCTGT  450

seq1  TGTTGTTTTTAAATATTTTTCATTTTATCTTTATTTATTCACTTTACATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTTTTAAATATTTTTCATTTTATCTTTATTTATTCACTTTACATC  500

seq1  CTGCTCATTTCCTCTCCTCTGGGTCACCCCCCTCCAACTACCCTTCCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCATTTCCTCTCCTCTGGGTCACCCCCCTCCAACTACCCTTCCTGC  550

seq1  CTTCCCTTGTCCTCTAAGAGAGTGGGTGCTTCTTTGGGTATCCAACCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCTTGTCCTCTAAGAGAGTGGGTGCTTCTTTGGGTATCCAACCACC  600

seq1  CTGTCACATCAATTCTTTGCAGGACTAGCTACATCCTCTCCCATTGAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACATCAATTCTTTGCAGGACTAGCTACATCCTCTCCCATTGAGGC  650

seq1  TAGACAAGGCAGTCCAGCTAAAAGAACTTATCCCACAGATAGGTAACAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAAGGCAGTCCAGCTAAAAGAACTTATCCCACAGATAGGTAACAGC  700

seq1  TTTTGGGATAGCCTCTCTTCCAGTTTTTCGTGACCTTCATGAAGACCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGATAGCCTCTCTTCCAGTTTTTCGTGACCTTCATGAAGACCAAG  750

seq1  CTGTATATCTTCTACATCTGTGCAGGGGGTGGGGCGAGGTCCACCCTGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATATCTTCTACATCTGTGCAGGGGGTGGGGCGAGGTCCACCCTGTG  800

seq1  TATGCACTTTGGTTAGTGGTTCAGTCTTTTGAAAGCCCCAAGGATCCAGG  850
      ||||||||||||||||||||||||||||||||||||||||| |||||| |
seq2  TATGCACTTTGGTTAGTGGTTCAGTCTTTTGAAAGCCCCAA-GATCCA-G  848

seq1  TGAGTTGACTCTGTTGGTCTTCCTGTGGAGTTTCTATCTCCTTCGGGCTT  900
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAG-TGACTCTGTTGGTCTTCCTGTGGAGTTTCTATCTCCTTCGGGCTT  897

seq1  GCAACCCTTCCTCCAACTCTTCCATAAGAGTTACCAAGTTCCATCCACTG  950
      ||||||||| ||||||||| ||||| |||||||||||||| ||| |||| 
seq2  GCAACCCTT-CTCCAACTC-TCCAT-AGAGTTACCAAGTTTCAT-CACTT  943

seq1  GC-TATGGCAC-TCTGCATCC  969
      || |||||||| |||||||||
seq2  GCTTATGGCACTTCTGCATCC  964


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