BAC Information

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BAC

Clone NameB6Ng01-049G12
Chromosome1 (Build37)
Map Location 168,127,162 - 168,211,319
singlet/doubletdoublet
Overlap geneMael, LOC100039795
Upstream geneTiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33
Downstream geneTada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik, LOC240895, LOC622102, C030014K22Rik, Uck2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049G12.bB6Ng01-049G12.g
ACCDH873680DH873681
length967527
definitionDH873680|Mus musculus domesticus DNA, BAC clone: B6Ng01-049G12, 5' end.DH873681|Mus musculus domesticus DNA, BAC clone: B6Ng01-049G12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(168,127,162 - 168,128,134)(168,210,787 - 168,211,319)
sequence
gaattctcatttttttgtttatgcttatgcattatatttactttctattg
ttgtgagaaacaccaactaaaagcaacttgagagggaaggctcattagtt
acagtacttaatgaagaccagttggggcaaaaacttctggcacgagcctg
gataaagtggagaccaggaggaaggctgcttctggccctcttagcctgct
ttcctatgcactcaggaccacctgcccacagtgggctgcaccctcccaca
tcaatgatcaatcaagaaagtcccccctaccccccactggcctataggtc
aatctgatagaggcattttctctttggggttgcctctttctagatgactt
gttctgttttgtcaacctgacaaatcatcacaaatgtgtagtcagctact
ccctgccccctgcatccctattttctgggaggcttcaggttgtgtgttgt
caggttgtgcgtgccactgtcacgtaagagacactgactttgtagcatta
actctcctgctacgcggatcctcatttcatcaatgccctgtccttatttg
agaaattttgtgtgcaagtgagactgtgcctagctcagtgcatttttaat
gctcctgtgttgttgctcacctaagcagtggcagggtggtgcctccaata
taatctttaggctcttgcgtcacactttttttttttttttgaagaaatga
ctatccttggcctgctttttattgccaagttttgagagttctgcatatat
tctgagtattagacccttaccagataaaacaatttgtgaattgtttttca
cattttatgggttttcacttgacagccctttaatacacactgatgacttt
ctttggatttaactgggataaattgcaatatggccctttttctctctgtg
tttggtgtcaggttagaatgttgcctcatggatggacgtggaggggagcg
tcctgagtgaggtaagc
tgaaggtgctggtgtgtgctaaagtaggatgcttccaccctaccagggat
gagcccaagcctgaagcatggtcaagtctgcaaatgaaatgtggggagag
gaatgcagaattaggaagttcggaaggaaggttctctctctggacttggg
gccagagtgtggctctgataattcctttcccccacctctcccttctgcca
ggagtaaacttcttttttcttccccaattcttttaccgttctccctctgt
ttgtaaatcttccagagagaaacagcagcagccactctctgagatcaaag
ttttagcaggcaacaaaagacctccaaggaggctgttgccatgggaactc
tgggagctgaggcccttctaatgggcaaatctccctggttagcagcacca
ggctatggctggcaaagagggagatgagggggagggggagtcttggtaac
tagtagcctctctgaacagcctgaactgaaattactgggatgtgggacag
gattcaaattggaactgcagggaagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_168127162_168128134
seq2: B6Ng01-049G12.b_47_1013

seq1  GAATTCTCATTTTTTTGTTTATGCTTATGCATTATATTTACTTTCTATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATTTTTTTGTTTATGCTTATGCATTATATTTACTTTCTATTG  50

seq1  TTGTGAGAAACACCAACTAAAAGCAACTTGAGAGGGAAGGCTCATTAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAGAAACACCAACTAAAAGCAACTTGAGAGGGAAGGCTCATTAGTT  100

seq1  ACAGTACTTAATGAAGACCAGTTGGGGCAAAAACTTCTGGCACGAGCCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTACTTAATGAAGACCAGTTGGGGCAAAAACTTCTGGCACGAGCCTG  150

seq1  GATAAAGTGGAGACCAGGAGGAAGGCTGCTTCTGGCCCTCTTAGCCTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGTGGAGACCAGGAGGAAGGCTGCTTCTGGCCCTCTTAGCCTGCT  200

seq1  TTCCTATGCACTCAGGACCACCTGCCCACAGTGGGCTGCACCCTCCCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATGCACTCAGGACCACCTGCCCACAGTGGGCTGCACCCTCCCACA  250

seq1  TCAATGATCAATCAAGAAAGTCCCCCCTACCCCCCACTGGCCTATAGGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGATCAATCAAGAAAGTCCCCCCTACCCCCCACTGGCCTATAGGTC  300

seq1  AATCTGATAGAGGCATTTTCTCTTTGGGGTTGCCTCTTTCTAGATGACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGATAGAGGCATTTTCTCTTTGGGGTTGCCTCTTTCTAGATGACTT  350

seq1  GTTCTGTTTTGTCAACCTGACAAATCATCACAAATGTGTAGTCAGCTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTTTTGTCAACCTGACAAATCATCACAAATGTGTAGTCAGCTACT  400

seq1  CCCTGCCCCCTGCATCCCTATTTTCTGGGAGGCTTCAGGTTGTGTGTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCCCCTGCATCCCTATTTTCTGGGAGGCTTCAGGTTGTGTGTTGT  450

seq1  CAGGTTGTGCGTGCCACTGTCACGTAAGAGACACTGACTTTGTAGCATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTGTGCGTGCCACTGTCACGTAAGAGACACTGACTTTGTAGCATTA  500

seq1  ACTCTCCTGCTACGCGGATCCTCATTTCATCAATGCCCTGTCCTTATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCTGCTACGCGGATCCTCATTTCATCAATGCCCTGTCCTTATTTG  550

seq1  AGAAATTTTGTGTGCAAGTGAGACTGTGCCTAGCTCAGTGCATTTTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTTGTGTGCAAGTGAGACTGTGCCTAGCTCAGTGCATTTTTAAT  600

seq1  GCTCCTGTGTTGTTGCTCACCTAAGCAGTGGCAGGGTGGTGCCTCCAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGTGTTGTTGCTCACCTAAGCAGTGGCAGGGTGGTGCCTCCAATA  650

seq1  TAATCTTTAGGCTCTTGCGTCACACTTTTTTTTTTTTTTTGAAGAAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTTAGGCTCTTGCGTCACACTTTTTTTTTTTTTTTGAAGAAATGA  700

seq1  CTATCCTTGGCCTGCTTTTTATTGCCAAGTTTTGAGAGTTCTGCATATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTTGGCCTGCTTTTTATTGCCAAGTTTTGAGAGTTCTGCATATAT  750

seq1  TCTGAGTATTAGACCCTTACCAGATAAAACAATTTGTGAATTGTTTTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTATTAGACCCTTACCAGATAAAACAATTTGTGAATTGTTTTTCA  800

seq1  CATTTTATGGGTTTTCACTTGACAGCCCTTTAATACACACTGATGACTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTATGGGTTTTCACTTGACAGCCCTTTAATACACACTGATGACTTT  850

seq1  CTTTGGATTTAACTGGGATAAATTGCAAT-TTGCCCTTTTTTTCTCCTTT  899
      ||||||||||||||||||||||||||||| | ||||||||| ||||    
seq2  CTTTGGATTTAACTGGGATAAATTGCAATATGGCCCTTTTTCTCTC----  896

seq1  GTTGTTTTTGGTGTCAGTTAAGAATGTTGCCTCAATGGATGGACCTGGAG  949
        ||| ||||||||||| | ||||||||||||| |||||||||| |||||
seq2  --TGTGTTTGGTGTCAGGTTAGAATGTTGCCTC-ATGGATGGACGTGGAG  943

seq1  GGTATCATCCTGAGTGAGGTAACC  973
      || | | ||||||||||||||| |
seq2  GGGAGCGTCCTGAGTGAGGTAAGC  967

seq1: chr1_168210787_168211319
seq2: B6Ng01-049G12.g_67_599 (reverse)

seq1  TGCTTCCCTGCAGTTCCAGTTTGAATCCTGTCCCACATCCCAGTGATTTC  50
      |||||||||||||||||| ||||||||||||||||||||||||| |||||
seq2  TGCTTCCCTGCAGTTCCAATTTGAATCCTGTCCCACATCCCAGTAATTTC  50

seq1  AGTTCAGGCTGTTCAGAGAGGCTACTTGTTGCCAAGACTCCCCCTCCCCC  100
      |||||||||||||||||||||||||| ||| |||||||||||||||||||
seq2  AGTTCAGGCTGTTCAGAGAGGCTACTAGTTACCAAGACTCCCCCTCCCCC  100

seq1  TCATCTCCCTCTTTGCCAGCCATAGCCTGGTGCTGCTAACCAGGGAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCCCTCTTTGCCAGCCATAGCCTGGTGCTGCTAACCAGGGAGATT  150

seq1  TGCCCATTAGAAGGGCCTCAGCTCCCAGAGTTCCCATGGCAACAGCCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATTAGAAGGGCCTCAGCTCCCAGAGTTCCCATGGCAACAGCCTCC  200

seq1  TTGGAGGTCTTTTGTTGCCTGCTAAAACTTTGATCTCAGAGAGTGGCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGTCTTTTGTTGCCTGCTAAAACTTTGATCTCAGAGAGTGGCTGC  250

seq1  TGCTGTTTCTCTCTGGAAGATTTACAAACAGAGGGAGAACGGTAAAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTTCTCTCTGGAAGATTTACAAACAGAGGGAGAACGGTAAAAGAA  300

seq1  TTGGGGAAGAAAAAAGAAGTTTACTCCTGGCAGAAGGGAGAGGTGGGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAAGAAAAAAGAAGTTTACTCCTGGCAGAAGGGAGAGGTGGGGGA  350

seq1  AAGGAATTATCAGAGCCACACTCTGGCCCCAAGTCCAGAGAGAGAACCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATTATCAGAGCCACACTCTGGCCCCAAGTCCAGAGAGAGAACCTT  400

seq1  CCTTCCGAACTTCCTAATTCTGCATTCCTCTCCCCACATTTCATTTGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCGAACTTCCTAATTCTGCATTCCTCTCCCCACATTTCATTTGCAG  450

seq1  ACTTGACCATGCTTCAGGCTTGGGCTCATCCCTGGTAGGGTGGAAGCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACCATGCTTCAGGCTTGGGCTCATCCCTGGTAGGGTGGAAGCATC  500

seq1  CTACTTTAGCACACACCAGCACCTTCAGAATTC  533
      |||||||||||||||||||||||||||||||||
seq2  CTACTTTAGCACACACCAGCACCTTCAGAATTC  533