BAC Information

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BAC

Clone NameB6Ng01-049H13
Chromosome1 (Build37)9 (Build37)
Map Location 182,821,361 - 182,821,457108,588,960 - 108,589,812
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100042190, Cdc42bpa, Cabc1, Psen2, EG277333, Itpkb, 6330403A02Rik, Gm821, Parp1, Lin9, Mixl1, LOC666431, Acbd3, H3f3a, BC031781
Downstream geneLefty2, Pycr2, Lefty1, Tmem63a, Ephx1, 9130409I23Rik, EG625597, Fgfr3-ps, Nvl, Cnih4, Wdr26, LOC100042363, LOC666519, Cnih3, Ccdc121, A230079K17Rik, Lbr, EG433384
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049H13.bB6Ng01-049H13.g
ACCDH873723DH873724
length105850
definitionDH873723|Mus musculus domesticus DNA, BAC clone: B6Ng01-049H13, 5' end.DH873724|Mus musculus domesticus DNA, BAC clone: B6Ng01-049H13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(182,821,361 - 182,821,457)(108,588,960 - 108,589,812)
sequence
gaattcaaggccagcctggtctaagagtgattaaaggacagccagggcta
tacagagaaccctgtctcgtttttcaaaaaaaaaaaaaaaaaaaaaaaag
agagg
gaattcactgtgtattgcagctgcccttgaacctttgatccttctacctc
agcctcctgaacagctgaaattataagcctggactacctaaaactaaaca
gaggaaagaaaggcagaaaggctgaagggagagaggatgacgaagccaga
aaaggtataggagaatcctgtacagtgggacatgcctattagcccagtct
tcgggataaaaggatcacaagttcgagagccagttgagctacacggcaag
cgtgagaccagcctggcttacataatggggtggactcaacgaaagaaaca
agtgtaggtgtgtacgtttggggactggggggattggattgtgcttctag
cttcaaaaggctatagtgaacaaaatacagggtagatacatctcttatat
cagagagagtgctactgtacttctgaatggccaccgttaaaacaacctgc
cctggccctcaccccttagtccagttatatataacttctttaaaaattct
gaccaggtcactatccttgatcaatcactgcctggcttccattttgactc
tgacagagaagtcttttggggagggcccatattcccccacccccactcca
tgctcctgtcaggaagagatatataaaggaacagtggcatttcaaaggac
ttctaaaagcaagccctgactgggaggggagtcacttgccatctgcttgg
tttcctttcacaaactgcctccaggggcctccctgtttgacttatattct
ctcaagtgaaagggtagaaattaatccgcgcccccctcccgcccatgact
tttagggaagaaaaccctccacttttcaatgtgaatatctccaggaaaat

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_182821361_182821457
seq2: B6Ng01-049H13.b_48_145 (reverse)

seq1  CCTCTCTTTTTTTTTTTTTTTGGGTTTTTTTTT-------GAGACAGGGT  43
      |||||||||||||||||||||   |||||||||       ||||||||| 
seq2  CCTCTCTTTTTTTTTTTTTTT---TTTTTTTTTGAAAAACGAGACAGGG-  46

seq1  TTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTG  93
      |||||||||||||||||||||||||  || ||||||| ||||||||||||
seq2  TTCTCTGTATAGCCCTGGCTGTCCTTTAA-TCACTCT-TAGACCAGGCTG  94

seq1  GCCT  97
      ||||
seq2  GCCT  98

seq1: chr9_108588960_108589812
seq2: B6Ng01-049H13.g_68_917 (reverse)

seq1  ATTTTCCCTTGGAGATACTTCACATTTGAAAGTGGAGTGTTTGCTTCCCT  50
      |||||||  |||||||| ||||||||  ||||||||| |||| |||||||
seq2  ATTTTCC--TGGAGATA-TTCACATTGAAAAGTGGAGGGTTTTCTTCCCT  47

seq1  GATAGTCATGTGGCGGGTGGGGGGCGCGGGATTATTTCATCCCTTTGCAC  100
       | ||||||| |||||| |||||||||||  | |||||  |||||| |||
seq2  AAAAGTCATG-GGCGGGAGGGGGGCGCGGATTAATTTCTACCCTTT-CAC  95

seq1  TTTGAGAGGACTCTAAGTCAAACAGGGAGGCCCCTGGAGGCAGCTTGTGA  150
       |||||| || | |||||||||||||||||||||||||||||| ||||||
seq2  -TTGAGA-GAATATAAGTCAAACAGGGAGGCCCCTGGAGGCAGTTTGTGA  143

seq1  AAGG-AACCAAGCAGATGGCAAGTGACT-CCCTCCCAGTCAGGGCTTGCT  198
      |||| ||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAGGAAACCAAGCAGATGGCAAGTGACTCCCCTCCCAGTCAGGGCTTGCT  193

seq1  TTTATGATGTCCTTTGAAATGCCACCTGTTCC-TTATATATCTCTTCCTG  247
      |||| || |||||||||||||||| ||||||| |||||||||||||||||
seq2  TTTA-GAAGTCCTTTGAAATGCCA-CTGTTCCTTTATATATCTCTTCCTG  241

seq1  ACAGGAGCATGGAGTGGGGGT-GGGGAATATGGGCCCTCCCC-AAAGACT  295
      ||||||||||||||||||||| |||||||||||||||||||| |||||||
seq2  ACAGGAGCATGGAGTGGGGGTGGGGGAATATGGGCCCTCCCCAAAAGACT  291

seq1  TCTCTGTCAGAGTC-AAATGGAAGCCAGGCAGTGATTGATCAAGGATAGT  344
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCAGAGTCAAAATGGAAGCCAGGCAGTGATTGATCAAGGATAGT  341

seq1  GACCTGGTCAGAATTTTTAAAGAAGTTATATATAACTGGACTAAGGGGTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGGTCAGAATTTTTAAAGAAGTTATATATAACTGGACTAAGGGGTG  391

seq1  AGGGCCAGGGCAGGTTGTTTTAACGGTGGCCATTCAGAAGTACAGTAGCA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCAGGGCAGGTTGTTTTAACGGTGGCCATTCAGAAGTACAGTAGCA  441

seq1  CTCTCTCTGATATAAGAGATGTATCTACCCTGTATTTTGTTCACTATAGC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTGATATAAGAGATGTATCTACCCTGTATTTTGTTCACTATAGC  491

seq1  CTTTTGAAGCTAGAAGCACAATCCAATCCCCCCAGTCCCCAAACGTACAC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGAAGCTAGAAGCACAATCCAATCCCCCCAGTCCCCAAACGTACAC  541

seq1  ACCTACACTTGTTTCTTTCGTTGAGTCCACCCCATTATGTAAGCCAGGCT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACACTTGTTTCTTTCGTTGAGTCCACCCCATTATGTAAGCCAGGCT  591

seq1  GGTCTCACGCTTGCCGTGTAGCTCAACTGGCTCTCGAACTTGTGATCCTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCACGCTTGCCGTGTAGCTCAACTGGCTCTCGAACTTGTGATCCTT  641

seq1  TTATCCCGAAGACTGGGCTAATAGGCATGTCCCACTGTACAGGATTCTCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCCGAAGACTGGGCTAATAGGCATGTCCCACTGTACAGGATTCTCC  691

seq1  TATACCTTTTCTGGCTTCGTCATCCTCTCTCCCTTCAGCCTTTCTGCCTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTTTTCTGGCTTCGTCATCCTCTCTCCCTTCAGCCTTTCTGCCTT  741

seq1  TCTTTCCTCTGTTTAGTTTTAGGTAGTCCAGGCTTATAATTTCAGCTGTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTCTGTTTAGTTTTAGGTAGTCCAGGCTTATAATTTCAGCTGTT  791

seq1  CAGGAGGCTGAGGTAGAAGGATCAAAGGTTCAAGGGCAGCTGCAATACAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGGCTGAGGTAGAAGGATCAAAGGTTCAAGGGCAGCTGCAATACAC  841

seq1  AGTGAATTC  853
      |||||||||
seq2  AGTGAATTC  850