BAC Information

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BAC

Clone NameB6Ng01-050G05
Chromosome1 (Build37)
Map Location 81,661,018 - 81,662,117
singlet/doubletsinglet
Overlap geneEG621020
Upstream geneDock10, LOC665092, 9430031J16Rik
Downstream geneLOC433328, EG665145, Irs1, Rhbdd1, Col4a4, Col4a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050G05.bB6Ng01-050G05.g
ACCDH874350DH874351
length1,1391,095
definitionDH874350|Mus musculus domesticus DNA, BAC clone: B6Ng01-050G05, 5' end.DH874351|Mus musculus domesticus DNA, BAC clone: B6Ng01-050G05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaacg
ttcagcatccttaatcatcaggaaaatacaaatcaaagcaaccctgagat
ttcaacgcataccagtcagaatggctaagatcaaacattcaggtgatagc
agatgctggcgaggatgtggagaaagaggaacactcttccattgttggtg
ggattgcaaggttttacaaccacttttgaaagcagtctggcggttcctcg
gaaaattggacatagtactaccagaggatcccacaagacctctcctggga
atatccagaagatgttccaactggtaagaaggacacatactccactatgt
tcatagaagccttatttataatagccagaagctggaaagaacccagatgc
ccctcaacagaggaatggatacagaaaatggggtacatttactcaatgga
gtactactcagctattaaaaagaatgaatttatgaaattcctaggcaaat
ggatggacctggagggcatcatcctgagtgaggtaatccaatcacaaaag
aactcacacaatatgtactcactgataatatccacccagaaacttagaat
accatgatacaagatacaatttgtgaaacacatgaaactcaagaagaacg
aagaccaaagtgtggacacattttcccttcttagaattgggaacaaaaca
cccatgaaaggagttacagagacaaaatttggagctgagacgaaaggatg
gaccatctagagactgccatacccggggacccatcccataatcagcctcc
aaacactgacaccattgcatacacttgcaagattttgctgaaaggaccct
gatatagctgtctgttgtgaggctattccagggcctagcaaacacttaag
tggatgctcacagtcagctattggatggatcacaggccccatgagagcta
gagaagtactagagctaaaggatctgcaccctatagtggaaaacaatatg
actaacagtatccccgggtcacgttctagctgcatatgatcagaggatgg
ctagtgcatcatggaaggaaggccattggttttgcaattgagcctcagta
caggaatgccaggcaagaatgtgaatatgaagggagtgg
gaattcagtaaaccaacccccagagaaatgcaaagaaaaaccacaagccg
atattgctgcagaccactacatggctgatgctcacaggctgtgccagtga
ggctgtgaggcaaccagcaatctcatcagtgattacagggcaagcaaagc
agcatgtattagcatgggagcagcaagtccactcctagccagttcaacat
atctgaaaacctatccttttgtagaaaatctctatgtaaacctttgcaat
attagttatgagcccaaaccaaaagcaaatgaaatgcccatcagcggatg
aacggatgaaaaaatgtggcaacgctttacttcagaatgctactcagaaa
tccttaaggagtgagaatggacttttaattctactaagtgcaaataaagt
acaactgatcaattattataactggtcaacatattgtgtggctacacaga
agcacctggagttatgcatgtgaatgatagctagaattgggatttgttgc
tacagagtacaaatcaatgactgcatgatactatgattaatggtctatta
gatcacactacaaagatttgtgaaaaatatgttttgagtaaaaaagttca
aactactgtatataactaccaaaattcattcatctctacatttaaaatca
ctgcagtctttgatatagaaagatttgtaccatgtgtacagaagagttag
tttgctgagatctggggggtagtcagccaggactcagttaaagtgccaag
gacaacctaccatggactaatatagtaaacaatgaaacttaagttcttgc
agctctggaggaaatagactaaggtcaaaatctcagatgtctgtctttgt
gacatgaccacaccatgtcctctaactgtgtacacaccgctcccttccta
ttaaggcatagtcacattagagtgctttgacggcctcgttgagctgctct
tttaaagattctgtctccaatacagtcaaatgggagaagtgctactccaa
ccgttgagttttgaggtacaactgtgcaatgctgcagtaaatattaagga
tgcattgaagctaataggctctcatttgtccagtggctgaatgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_81661018_81662117
seq2: B6Ng01-050G05.g_68_1162

seq1  GAATTCAGTAAACCAACCCCCAGAGAAATGCAAAGAAAAACCACAAGCCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAAACCAACCCCCAGAGAAATGCAAAGAAAAACCACAAGCCG  50

seq1  ATATTGCTGCAGACCACTACATGGCTGATGCTCACAGGCTGTGCCAGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGCTGCAGACCACTACATGGCTGATGCTCACAGGCTGTGCCAGTGA  100

seq1  GGCTGTGAGGCAACCAGCAATCTCATCAGTGATTACAGGGCAAGCAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGAGGCAACCAGCAATCTCATCAGTGATTACAGGGCAAGCAAAGC  150

seq1  AGCATGTATTAGCATGGGAGCAGCAAGTCCACTCCTAGCCAGTTCAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTATTAGCATGGGAGCAGCAAGTCCACTCCTAGCCAGTTCAACAT  200

seq1  ATCTGAAAACCTATCCTTTTGTAGAAAATCTCTATGTAAACCTTTGCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAAACCTATCCTTTTGTAGAAAATCTCTATGTAAACCTTTGCAAT  250

seq1  ATTAGTTATGAGCCCAAACCAAAAGCAAATGAAATGCCCATCAGCGGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTTATGAGCCCAAACCAAAAGCAAATGAAATGCCCATCAGCGGATG  300

seq1  AACGGATGAAAAAATGTGGCAACGCTTTACTTCAGAATGCTACTCAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGATGAAAAAATGTGGCAACGCTTTACTTCAGAATGCTACTCAGAAA  350

seq1  TCCTTAAGGAGTGAGAATGGACTTTTAATTCTACTAAGTGCAAATAAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAGGAGTGAGAATGGACTTTTAATTCTACTAAGTGCAAATAAAGT  400

seq1  ACAACTGATCAATTATTATAACTGGTCAACATATTGTGTGGCTACACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGATCAATTATTATAACTGGTCAACATATTGTGTGGCTACACAGA  450

seq1  AGCACCTGGAGTTATGCATGTGAATGATAGCTAGAATTGGGATTTGTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTGGAGTTATGCATGTGAATGATAGCTAGAATTGGGATTTGTTGC  500

seq1  TACAGAGTACAAATCAATGACTGCATGATACTATGATTAATGGTCTATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGTACAAATCAATGACTGCATGATACTATGATTAATGGTCTATTA  550

seq1  GATCACACTACAAAGATTTGTGAAAAATATGTTTTGAGTAAAAAAGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACACTACAAAGATTTGTGAAAAATATGTTTTGAGTAAAAAAGTTCA  600

seq1  AACTACTGTATATAACTACCAAAATTCATTCATCTCTACATTTAAAATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACTGTATATAACTACCAAAATTCATTCATCTCTACATTTAAAATCA  650

seq1  CTGCAGTCTTTGATATAGAAAGATTTGTACCATGTGTACAGAAGAGTTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTCTTTGATATAGAAAGATTTGTACCATGTGTACAGAAGAGTTAG  700

seq1  TTTGCTGAGATCTGGGGGGTAGTCAGCCAGGACTCAGTTAAAGTGCCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGAGATCTGGGGGGTAGTCAGCCAGGACTCAGTTAAAGTGCCAAG  750

seq1  GACAACCTACCATGGACTAATATAGTAAACAATGAAACTTAAGTTCTTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCTACCATGGACTAATATAGTAAACAATGAAACTTAAGTTCTTGC  800

seq1  AGCTCTGGAGGAAATAGACTAAGGTCAAAATCTCAGATGTCTGTCTTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGGAGGAAATAGACTAAGGTCAAAATCTCAGATGTCTGTCTTTGT  850

seq1  GACATGACCACACCATGTCCTCTAACTGTGTACACACCGCTCCCTTCCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGACCACACCATGTCCTCTAACTGTGTACACACCGCTCCCTTCCTA  900

seq1  TTAAGGCCATAGTCACATTAGAGTGCTTTGACGGCCTCGTTGAGCTGCTC  950
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGG-CATAGTCACATTAGAGTGCTTTGACGGCCTCGTTGAGCTGCTC  949

seq1  TTTTAAAGATTCTGTCTCCAAATACAGTCAAAATGGGAGAAGTGCTACTC  1000
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  TTTTAAAGATTCTGTCTCC-AATACAGTC-AAATGGGAGAAGTGCTACTC  997

seq1  CAACCGTTGAGTTTTGAGGTAACACTGTGCAAATGCTGCAGTAAATATTT  1050
      |||||||||||||||||||||  ||||||| |||||||||||||||| ||
seq2  CAACCGTTGAGTTTTGAGGTACAACTGTGC-AATGCTGCAGTAAATA-TT  1045

seq1  AAGGATGCATTTGAGGCTAATAAGCCTTCA-TTGTCTAGTGGCTGAATGA  1099
      ||||||||| |||| ||||||| ||  ||| ||||| |||||||||||||
seq2  AAGGATGCA-TTGAAGCTAATAGGCTCTCATTTGTCCAGTGGCTGAATGA  1094

seq1  C  1100
      |
seq2  C  1095