BAC Information

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BAC

Clone NameB6Ng01-051A02
Chromosome1 (Build37)
Map Location 168,571,957 - 168,681,141
singlet/doubletdoublet
Overlap geneEG226604, 4831428F09Rik
Upstream geneRcsd1, Creg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601
Downstream geneLOC240895, LOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051A02.bB6Ng01-051A02.g
ACCDH874776DH874777
length4551,149
definitionDH874776|Mus musculus domesticus DNA, BAC clone: B6Ng01-051A02, 5' end.DH874777|Mus musculus domesticus DNA, BAC clone: B6Ng01-051A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(168,571,957 - 168,572,417)(168,679,723 - 168,681,141)
sequence
tatggttaagtagctctgcatgtggctcctaggtgggtagaagtcctatg
cacataaagttcctataatgttcacttcccaaatgtcacagctcattaga
gcacaaaatacatatgttttatttttctaggacctatgtatttttacttt
acaaaatgaaacagagattagattttgggttccagctgggacagtgctca
tatggtgggtagaaaagacaaacatatcttggcgaatcctaagagtgggg
ggaggggattaaatgcagggtgaagtgccttcctggctttgtgtgtggac
tttgccttgacccatgtgcaggctgtgggcggggattccctcctcacctg
gaactggatgtgtttcatgagcccgaagtgcctggcatacatcctgaggt
actccatcattttggagtggtgcatgtagttggggtaatgatcagggatg
gggta
gaattctgtgtttagacttgggtcccattcccaggatatctcattatata
ttccaaactctgaattatttgaaaaccctaaacacttctggttccaagca
taaggtatactcaatctgtaacacaattttatagtgacaaaaacctacat
tcaaaaggaagtgtgtcaaataaaaaaaaataactttacacctcaaagga
ttcgaaaattaagaaaaatctaaactggatgttattataatgagtgtgtt
atcagagatttagagtagaaataaacaaaatacagaattaaaaaataata
caaaaaagccaataaaataagatttaaataaacactgaagagaactatta
aacccttagctagactagctaaaaaaagggggagagagaggcaagatatc
cggcatacaatggtaagagctgagcgtgaacacactggttaatctagaag
aactcagtcaactcctagaatgcacaacctcagaagaattaatcatgaag
aaatggaaagtcgggacagactggtaatgagtatggagattaaatcagta
gtcaaaaattttctaacaaaggaaagcctgggaccagatggttttgctgg
caacttccaccaaacgcttagagaagagtcactgccaatctttcttcaac
tggtccagaaacacagggaaaaagagaacactctcaagctcacttttatt
aaagccagaattactgtgatacaaaaaccagacaatgacagcccaagaaa
aagaatgtgatagttctctgattaatgtgaacgaaaaaaatcctcaacaa
atagcacactaaatcccacaacacattaaaaagatcacacatcatgaaca
aatctatttctgggattcaagaatgactaaagatacttaaatcaataaac
atatttacagcacattaaaaaatgatggactttcaaatacattacttgat
cattttagtgggtgcagaaagaaagcttttgataaaattcaacatctttt
ttgcaatattaggaaattgcagcaaacatttttatgaggattataaagca
caattgactacagaataccctcagctcatgcttgacaacacaagggtgag
aaagctgaggtttagggttgaaagccaggggtcaagggtggaaagctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_168571957_168572417
seq2: B6Ng01-051A02.b_42_502

seq1  GAATTCTATGGTTAAGTAGCTCTGCATGTGGCTCCTAGGTGGGTAGAAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGGTTAAGTAGCTCTGCATGTGGCTCCTAGGTGGGTAGAAGT  50

seq1  CCTATGCACATAAAGTTCCTATAATGTTCACTTCCCAAATGTCACAGCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGCACATAAAGTTCCTATAATGTTCACTTCCCAAATGTCACAGCTC  100

seq1  ATTAGAGCACAAAATACATATGTTTTATTTTTCTAGGACCTATGTATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAGCACAAAATACATATGTTTTATTTTTCTAGGACCTATGTATTTT  150

seq1  TACTTTACAAAATGAAACAGAGATTAGATTTTGGGTTCCAGCTGGGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTACAAAATGAAACAGAGATTAGATTTTGGGTTCCAGCTGGGACAG  200

seq1  TGCTCATATGGTGGGTAGAAAAGACAAACATATCTTGGCGAATCCTAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATATGGTGGGTAGAAAAGACAAACATATCTTGGCGAATCCTAAGA  250

seq1  GTGGGGGGAGGGGATTAAATGCAGGGTGAAGTGCCTTCCTGGCTTTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGGAGGGGATTAAATGCAGGGTGAAGTGCCTTCCTGGCTTTGTGT  300

seq1  GTGGACTTTGCCTTGACCCATGTGCAGGCTGTGGGCGGGGATTCCCTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACTTTGCCTTGACCCATGTGCAGGCTGTGGGCGGGGATTCCCTCCT  350

seq1  CACCTGGAACTGGATGTGTTTCATGAGCCCGAAGTGCCTGGCATACATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGAACTGGATGTGTTTCATGAGCCCGAAGTGCCTGGCATACATCC  400

seq1  TGAGGTACTCCATCATTTTGGAGTGGTGCATGTAGTTGGGGTAATGATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTACTCCATCATTTTGGAGTGGTGCATGTAGTTGGGGTAATGATCA  450

seq1  GGGATGGGGTA  461
      |||||||||||
seq2  GGGATGGGGTA  461

seq1: chr1_168679723_168681141
seq2: B6Ng01-051A02.g_68_1216 (reverse)

seq1  TCAGCTTCTCACCCTTGACCCTCAGCTTCTCACCCTGACCCTCAGCTTCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CACCCTTGACCCTCAGCTTCTCACCCTTGACCCTCAGCTTCTCACCCTGA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CCCTCAGCTTCTCACCCTGACCCTCAGCTTCTCACCCTGACCCTCAGCTT  150
                                                        
seq2  --------------------------------------------------  0

seq1  CTCACCCTTGACCCTCAGCTTCTCACCCTTGACCCTCAGCTTCTCACCCT  200
                                                        
seq2  --------------------------------------------------  0

seq1  TGACCCTCAGCTTCTCACCCTTGACCCTCAGCTTCTCACCCTGACCCTCA  250
                                                        
seq2  --------------------------------------------------  0

seq1  GCTTCTCACCCTTTACCCTCAGCTTCTCACCCTTGACCCTCGGCTTCTCA  300
                        |||||||  ||||||||||||  ||||| |||
seq2  ------------------TCAGCTTTCCACCCTTGACCCCTGGCTT-TCA  31

seq1  CCCTTGACCCTCAGC-TTCTCACCCTTGTGTTGTCAAGCATGAGCTGAGG  349
       || | | ||||||| ||||||||||||||||||||||||||||||||||
seq2  ACCCTAAACCTCAGCTTTCTCACCCTTGTGTTGTCAAGCATGAGCTGAGG  81

seq1  GTA-TCTGTAGTCAATTGTGCTTTATTAATCCTCATAGACATTGTTTGCT  398
      ||| ||||||||||||||||||||| ||||||||||| | | ||||||||
seq2  GTATTCTGTAGTCAATTGTGCTTTA-TAATCCTCATA-AAAATGTTTGCT  129

seq1  GCAATTTCCTAATATTGCAAAAAAAGATGTTGAATTTTATCAAAAGCTTT  448
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCAATTTCCTAATATTGC-AAAAAAGATGTTGAATTTTATCAAAAGCTTT  178

seq1  CTTTCTGCACCCACTAAAATGATCAAGTAATGTATTTGAAAGTCCATCAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGCACCCACTAAAATGATCAAGTAATGTATTTGAAAGTCCATCAT  228

seq1  TTTTTAATGTGCTGTAAATATGTTTATTGATTTAAGTATCTTTAGTCATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATGTGCTGTAAATATGTTTATTGATTTAAGTATCTTTAGTCATT  278

seq1  CTTGAATCCCAGAAATAGATTTGTTCATGATGTGTGATCTTTTTAATGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATCCCAGAAATAGATTTGTTCATGATGTGTGATCTTTTTAATGTG  328

seq1  TTGTGGGATTTAGTGTGCTATTTGTTGAGGATTTTTTTCGTTCACATTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGGATTTAGTGTGCTATTTGTTGAGGATTTTTTTCGTTCACATTAA  378

seq1  TCAGAGAACTATCACATTCTTTTTCTTGGGCTGTCATTGTCTGGTTTTTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGAACTATCACATTCTTTTTCTTGGGCTGTCATTGTCTGGTTTTTG  428

seq1  TATCACAGTAATTCTGGCTTTAATAAAAGTGAGCTTGAGAGTGTTCTCTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAGTAATTCTGGCTTTAATAAAAGTGAGCTTGAGAGTGTTCTCTT  478

seq1  TTTCCCTGTGTTTCTGGACCAGTTGAAGAAAGATTGGCAGTGACTCTTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGTGTTTCTGGACCAGTTGAAGAAAGATTGGCAGTGACTCTTCT  528

seq1  CTAAGCGTTTGGTGGAAGTTGCCAGCAAAACCATCTGGTCCCAGGCTTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCGTTTGGTGGAAGTTGCCAGCAAAACCATCTGGTCCCAGGCTTTC  578

seq1  CTTTGTTAGAAAATTTTTGACTACTGATTTAATCTCCATACTCATTACCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTAGAAAATTTTTGACTACTGATTTAATCTCCATACTCATTACCA  628

seq1  GTCTGTCCCGACTTTCCATTTCTTCATGATTAATTCTTCTGAGGTTGTGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCCCGACTTTCCATTTCTTCATGATTAATTCTTCTGAGGTTGTGC  678

seq1  ATTCTAGGAGTTGACTGAGTTCTTCTAGATTAACCAGTGTGTTCACGCTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGGAGTTGACTGAGTTCTTCTAGATTAACCAGTGTGTTCACGCTC  728

seq1  AGCTCTTACCATTGTATGCCGGATATCTTGCCTCTCTCTCCCCCTTTTTT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTACCATTGTATGCCGGATATCTTGCCTCTCTCTCCCCCTTTTTT  778

seq1  TAGCTAGTCTAGCTAAGGGTTTAATAGTTCTCTTCAGTGTTTATTTAAAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAGTCTAGCTAAGGGTTTAATAGTTCTCTTCAGTGTTTATTTAAAT  828

seq1  CTTATTTTATTGGCTTTTTTGTATTATTTTTTAATTCTGTATTTTGTTTA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTATTGGCTTTTTTGTATTATTTTTTAATTCTGTATTTTGTTTA  878

seq1  TTTCTACTCTAAATCTCTGATAACACACTCATTATAATAACATCCAGTTT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACTCTAAATCTCTGATAACACACTCATTATAATAACATCCAGTTT  928

seq1  AGATTTTTCTTAATTTTCGAATCCTTTGAGGTGTAAAGTTATTTTTTTTT  1248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTTCTTAATTTTCGAATCCTTTGAGGTGTAAAGTTATTTTTTTTT  978

seq1  ATTTGACACACTTCCTTTTGAATGTAGGTTTTTGTCACTATAAAATTGTG  1298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACACACTTCCTTTTGAATGTAGGTTTTTGTCACTATAAAATTGTG  1028

seq1  TTACAGATTGAGTATACCTTATGCTTGGAACCAGAAGTGTTTAGGGTTTT  1348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGATTGAGTATACCTTATGCTTGGAACCAGAAGTGTTTAGGGTTTT  1078

seq1  CAAATAATTCAGAGTTTGGAATATATAATGAGATATCCTGGGAATGGGAC  1398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAATTCAGAGTTTGGAATATATAATGAGATATCCTGGGAATGGGAC  1128

seq1  CCAAGTCTAAACACAGAATTC  1419
      |||||||||||||||||||||
seq2  CCAAGTCTAAACACAGAATTC  1149