BAC Information

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BAC

Clone NameB6Ng01-051J04
Chromosome1 (Build37)
Map Location 143,067,780 - 143,118,517
singlet/doubletdoublet
Overlap genenone
Upstream geneCfh, Kcnt2
Downstream geneEG226472, LOC639376
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051J04.bB6Ng01-051J04.g
ACCDH875173DH875174
length1,1241,161
definitionDH875173|Mus musculus domesticus DNA, BAC clone: B6Ng01-051J04, 5' end.DH875174|Mus musculus domesticus DNA, BAC clone: B6Ng01-051J04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,117,372 - 143,118,517)(143,067,780 - 143,068,954)
sequence
gaattctactgtaaatttttcactaaacttcatcatcaccccatcataaa
atgttccatatattagtagtttaaaaatattggtaaagctattggaaaat
gtaccattcccagcattagacggtttattactcaggaattcttgctctaa
cttttattgcttcaaaaccacagcttacaagatgggtctgttttctcctt
tcctttaggccacctttctatacatactaagtgactgttgctgagaggct
ttaactccttggatatttcctgggtaccaactaaattctgcagtcaacag
aaaagatggcaatgctctgttggcaataacaaatatgaatagctcctgtg
ctcctgtgatatgccacataactactcatagacataacatggacaactac
ctagaatagtttataatctatttgtttctattttatgtacactggtgttc
tgcctccacacatgtctgtgtaaaattgtcatatcacctagaattggaat
ttcagacagttgtgagtttcctagtgggtgctggtaactgatcccagaac
ctttgaaaaaacagccaacattcttaaccactgagaaatctccccagttt
cacacttataaacttgtataatgaatcgtgtctatgccctcataatctca
tatgttacatgttgaggcctcaacaactttaatttgaaggtggaaattct
gcaactagtaaggtttacaacacatcataaaagtgatccgtgcatgggca
aaatggagctcctaattctgtctctgaaatatttcagtgcccaactctag
aattgttatttgaggataaactgagaaggtaccatgggtaccttgtcctt
atattgtctccagcagaagtgtagcccagattaaaagtgtgttccttaaa
ctgggagattcaatcttctggaatccatagccactatggctcaagatctt
caaaccaagatccagataagatctccaagcctcagataaggtcactggtg
agccttccattccgatgtagtcattcaaatattgtcaagttgacacagat
agcactacattccacccttgtcacttgaacaattatatctcatgtcaatg
aacaataacaaggttataatacgc
gaattcagatgagagagcagtctgtagtgttgaatgcagatggaagttta
acagaataatatgagcccctgtcagtggttagaatggatgatggctagag
ggacttttgtggaatctcaaaggttgagattggattagagaatgttgttt
aaatatccatggttaaacacagagagcctttagtaaattatatatatata
tataaatataatatatttagtaaatcattatatatatatatatatataat
gttattgtcatcattttaagaattagtaaactgaaaataatggtttgata
caagtaaaatagattacataaaattactatatagtttccctttaaaccta
gagaaagaaaacaaggtagattgtcttctgtttaattcttctatcaagac
gcatatcactatggaaaatataaaaaatggctggagcatgtcctggttta
aagcaacatcatcttctctggagtatgaattgacatattttcttcataat
tttaccactgtcatatttatcacacatacacatatacacgtgcacacaca
cacacacacacacacacacacacacacacacacacacgaaaaacatcttt
catttaactcaagctcttgctttgaatggttataaaattttctgaattag
taacaagaaaagtcctattaatcactacaaatgcatggtaactgtacatt
catttatactaaatacagtgtatgtgtagagaatatttctcctgagaatt
tagaagatactaattatattagtcttcatagtggtaaagtcaataatttt
tatttgattaaaaattttcacataaaccaagatgtaaatactaaagtttc
ttttatattgccattgtttccacttcctagctattaatgattatatagaa
tcaattatattaattcagaaaaaaatcacattagtatcatttttcattgt
cttctaataaaaccatgaatattgttcaaactaaagtcacagaaaatcaa
atcaaaaccaagtccaaatgcaaatcaggatagaaccaaaaccatgaaaa
tctgatcataacattactaaatatcactatataactaacataaggcacca
gtattttttgaaatataatagatgaaaatatattacatatttagtactct
acaatttattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_143117372_143118517
seq2: B6Ng01-051J04.b_44_1167 (reverse)

seq1  GCGTATTTATAACCTTGTTATTGTTTCATGTGAACATGAGATATTATTTG  50
      ||||| ||||||||||||||||| ||||| || |||||||||| || |||
seq2  GCGTA-TTATAACCTTGTTATTG-TTCAT-TG-ACATGAGATA-TAATTG  45

seq1  TGTCAAGTTGACAAGGGGTGGATTGTAGTGGCTATTCCTGGTTGTCAACT  100
      | ||||| |||||| ||||||| |||||| |||||  |||  ||||||||
seq2  T-TCAAG-TGACAA-GGGTGGAATGTAGT-GCTAT--CTG--TGTCAACT  87

seq1  TGACAATATTTGGAATGAACTACAATCCGGAATTGGAAGGCTCACCAGTG  150
      ||||||||||| ||||| ||||||   ||||| |||||||||||||||||
seq2  TGACAATATTT-GAATG-ACTACA--TCGGAA-TGGAAGGCTCACCAGTG  132

seq1  ACCCTTATCTGGAGGCTTGGAGATCCTTATCTGGATCTTGGTTTGAAGAT  200
      | |||||||| ||||||||||||| |||||||||||||||||||||||||
seq2  A-CCTTATCT-GAGGCTTGGAGAT-CTTATCTGGATCTTGGTTTGAAGAT  179

seq1  CTTGAGCCATAGTGGCTATGGATTCCAGAAGATTGAATCTCCCAGTTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGCCATAGTGGCTATGGATTCCAGAAGATTGAATCTCCCAGTTTAA  229

seq1  GGAACACACCTTTAATCTGGGCTACACCTTCTGCTGGAGACAATATAAGG  300
      ||||||||| |||||||||||||||| |||||||||||||||||||||||
seq2  GGAACACACTTTTAATCTGGGCTACA-CTTCTGCTGGAGACAATATAAGG  278

seq1  ACAAGGTACCCATGGTACCTTCTCAGTTTATCCTCAAATAACAATTCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGTACCCATGGTACCTTCTCAGTTTATCCTCAAATAACAATTCTAG  328

seq1  AGTTGGGCACTGAAATATTTCAGAGACAGAATTAGGAGCTCCATTTTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGGCACTGAAATATTTCAGAGACAGAATTAGGAGCTCCATTTTGCC  378

seq1  CATGCACGGATCACTTTTATGATGTGTTGTAAACCTTACTAGTTGCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACGGATCACTTTTATGATGTGTTGTAAACCTTACTAGTTGCAGAA  428

seq1  TTTCCACCTTCAAATTAAAGTTGTTGAGGCCTCAACATGTAACATATGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACCTTCAAATTAAAGTTGTTGAGGCCTCAACATGTAACATATGAG  478

seq1  ATTATGAGGGCATAGACACGATTCATTATACAAGTTTATAAGTGTGAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGAGGGCATAGACACGATTCATTATACAAGTTTATAAGTGTGAAAC  528

seq1  TGGGGAGATTTCTCAGTGGTTAAGAATGTTGGCTGTTTTTTCAAAGGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGATTTCTCAGTGGTTAAGAATGTTGGCTGTTTTTTCAAAGGTTC  578

seq1  TGGGATCAGTTACCAGCACCCACTAGGAAACTCACAACTGTCTGAAATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCAGTTACCAGCACCCACTAGGAAACTCACAACTGTCTGAAATTC  628

seq1  CAATTCTAGGTGATATGACAATTTTACACAGACATGTGTGGAGGCAGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTAGGTGATATGACAATTTTACACAGACATGTGTGGAGGCAGAAC  678

seq1  ACCAGTGTACATAAAATAGAAACAAATAGATTATAAACTATTCTAGGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGTACATAAAATAGAAACAAATAGATTATAAACTATTCTAGGTAG  728

seq1  TTGTCCATGTTATGTCTATGAGTAGTTATGTGGCATATCACAGGAGCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCATGTTATGTCTATGAGTAGTTATGTGGCATATCACAGGAGCACA  778

seq1  GGAGCTATTCATATTTGTTATTGCCAACAGAGCATTGCCATCTTTTCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTATTCATATTTGTTATTGCCAACAGAGCATTGCCATCTTTTCTGT  828

seq1  TGACTGCAGAATTTAGTTGGTACCCAGGAAATATCCAAGGAGTTAAAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCAGAATTTAGTTGGTACCCAGGAAATATCCAAGGAGTTAAAGCC  878

seq1  TCTCAGCAACAGTCACTTAGTATGTATAGAAAGGTGGCCTAAAGGAAAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCAACAGTCACTTAGTATGTATAGAAAGGTGGCCTAAAGGAAAGG  928

seq1  AGAAAACAGACCCATCTTGTAAGCTGTGGTTTTGAAGCAATAAAAGTTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACAGACCCATCTTGTAAGCTGTGGTTTTGAAGCAATAAAAGTTAG  978

seq1  AGCAAGAATTCCTGAGTAATAAACCGTCTAATGCTGGGAATGGTACATTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAATTCCTGAGTAATAAACCGTCTAATGCTGGGAATGGTACATTT  1028

seq1  TCCAATAGCTTTACCAATATTTTTAAACTACTAATATATGGAACATTTTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATAGCTTTACCAATATTTTTAAACTACTAATATATGGAACATTTTA  1078

seq1  TGATGGGGTGATGATGAAGTTTAGTGAAAAATTTACAGTAGAATTC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGGGTGATGATGAAGTTTAGTGAAAAATTTACAGTAGAATTC  1124

seq1: chr1_143067780_143068954
seq2: B6Ng01-051J04.g_66_1226

seq1  GAATTCAGATGAGAGAGCAGTCTGTAGTGTTGAATGCAGATGGAAGTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATGAGAGAGCAGTCTGTAGTGTTGAATGCAGATGGAAGTTTA  50

seq1  ACAGAATAATATGAGCCCCTGTCAGTGGTTAGAATGGATGATGGCTAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATAATATGAGCCCCTGTCAGTGGTTAGAATGGATGATGGCTAGAG  100

seq1  GGACTTTTGTGGAATCTCAAAGGTTGAGATTGGATTAGAGAATGTTGTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTTGTGGAATCTCAAAGGTTGAGATTGGATTAGAGAATGTTGTTT  150

seq1  AAATATCCATGGTTAAACACAGAGAGCCTTTAGTAAATTATATATATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCCATGGTTAAACACAGAGAGCCTTTAGTAAATTATATATATATA  200

seq1  TATAAATATAATATATTTAGTAAATCATTATATATATATATATATATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATATAATATATTTAGTAAATCATTATATATATATATATATATAAT  250

seq1  GTTATTGTCATCATTTTAAGAATTAGTAAACTGAAAATAATGGTTTGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGTCATCATTTTAAGAATTAGTAAACTGAAAATAATGGTTTGATA  300

seq1  CAAGTAAAATAGATTACATAAAATTACTATATAGTTTCCCTTTAAACCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAAAATAGATTACATAAAATTACTATATAGTTTCCCTTTAAACCTA  350

seq1  GAGAAAGAAAACAAGGTAGATTGTCTTCTGTTTAATTCTTCTATCAAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAAAACAAGGTAGATTGTCTTCTGTTTAATTCTTCTATCAAGAC  400

seq1  GCATATCACTATGGAAAATATAAAAAATGGCTGGAGCATGTCCTGGTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATCACTATGGAAAATATAAAAAATGGCTGGAGCATGTCCTGGTTTA  450

seq1  AAGCAACATCATCTTCTCTGGAGTATGAATTGACATATTTTCTTCATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACATCATCTTCTCTGGAGTATGAATTGACATATTTTCTTCATAAT  500

seq1  TTTACCACTGTCATATTTATCACACATACACATATACACGTGCACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCACTGTCATATTTATCACACATACACATATACACGTGCACACACA  550

seq1  CACACACACACACACACACACACACACACACACACACGAAAAACATCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACGAAAAACATCTTT  600

seq1  CATTTAACTCAAGCTCTTGCTTTGAATGGTTATAAAATTTTCTGAATTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTAACTCAAGCTCTTGCTTTGAATGGTTATAAAATTTTCTGAATTAG  650

seq1  TAACAAGAAAAGTCCTATTAATCACTACAAATGCATGGTAACTGTACATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGAAAAGTCCTATTAATCACTACAAATGCATGGTAACTGTACATT  700

seq1  CATTTATACTAAATACAGTGTATGTGTAGAGAATATTTCTCCTGAGAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATACTAAATACAGTGTATGTGTAGAGAATATTTCTCCTGAGAATT  750

seq1  TAGAAGATACTAATTATATTAGTCTTCATAGTGGTAAAGTCAATAATTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGATACTAATTATATTAGTCTTCATAGTGGTAAAGTCAATAATTTT  800

seq1  TATTTGATTAAAAATTTTCACATAAACCAAGATGTAAATACTAAAGTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGATTAAAAATTTTCACATAAACCAAGATGTAAATACTAAAGTTTC  850

seq1  TTTTATATTGCCATTGTTTCCACTTCCTAGCTATTAATGATTATATAGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATTGCCATTGTTTCCACTTCCTAGCTATTAATGATTATATAGAA  900

seq1  TCAATTATATTAATTCAGAAAAAAATCACATTAGTATCA-TTTTCATTGT  949
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCAATTATATTAATTCAGAAAAAAATCACATTAGTATCATTTTTCATTGT  950

seq1  CTCCTAATAAAACCATGAATATTGTTCAAACTAAAGTCACAGAAAATCAA  999
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTAATAAAACCATGAATATTGTTCAAACTAAAGTCACAGAAAATCAA  1000

seq1  ATCAAAACCAAGTCCAAATGCAAAATCAGGATAGAAACCAAAAACCAATG  1049
      ||||||||||||||||||||| |||||||||||| ||||||||  | |||
seq2  ATCAAAACCAAGTCCAAATGC-AAATCAGGATAG-AACCAAAA--CCATG  1046

seq1  AAAAAATCTGATCATAACATTAACTAAATATCAACTAATATAACTAACAT  1099
        ||||||||||||||||||| |||||||||| ||| |||||||||||||
seq2  --AAAATCTGATCATAACATT-ACTAAATATC-ACT-ATATAACTAACAT  1091

seq1  AAAGCACAAGTAATTTTTTAAAATAATAATAGATGAAATAATATTAACAT  1149
      || |||| ||| ||||||| |||| |||||||||||||  ||||| ||||
seq2  AAGGCACCAGT-ATTTTTTGAAAT-ATAATAGATGAAAATATATT-ACAT  1138

seq1  ATTTAGTTACTCTTACATATTTATTT  1175
      |||||| ||||| |||| ||||||||
seq2  ATTTAG-TACTC-TACA-ATTTATTT  1161