BAC Information

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BAC

Clone NameB6Ng01-051J19
Chromosome1 (Build37)
Map Location 31,506,396 - 31,685,703
singlet/doubletdoublet
Overlap geneLOC624275
Upstream geneEG624138, LOC100040699, Phf3, EG638995, Ptp4a1, EG435615, LOC669402, EG435616, 4931428L18Rik, LOC666020, Gluld1, 4930521A18Rik, EG226957, EG624262
Downstream geneLOC666056, LOC100041238, Khdrbs2, EG408191
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051J19.bB6Ng01-051J19.g
ACCDH875200DH875201
length885977
definitionDH875200|Mus musculus domesticus DNA, BAC clone: B6Ng01-051J19, 5' end.DH875201|Mus musculus domesticus DNA, BAC clone: B6Ng01-051J19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,506,396 - 31,507,277)(31,684,718 - 31,685,703)
sequence
gaattcatttttctacacaaacgacaagcaattgtagcatgcaagatcaa
cttcctttacattggcaacttttgagttttatcctgacttgcctcattgc
tttgttgctgtttatagaagtctccattcctgctatgttgcctccacctg
tcatctgtatttttattcccaaacttatttctgggggttctttggttgtt
tgtgagttgtatggtattttctgggctctctgtagttcttgttcctatca
agtttcatctaacttttaccttttgctttgaaacccaatcatctgccttt
attcttccttcaaactgtttccacttctgtatgttagcctctttgaagtg
gattctcctttgaaatttagccatcatttcccaaatacttttattttggt
gtgtaaacgtttacttattctcattgagaataccaggttaatacttttca
tgtacactactcactttcctaatcagtttcacttacatgaaagttaactt
tctttttcattgttttctttttgtaatttgctatggctgtttttatttat
tttggcctttcatttctccctttctccctttcttccttctctctctctct
ctctctctctctctctcgattttgagttttgctagtttacaaagtttact
tttgattatttttttaaattctcatttgttttgtccactctcataagact
aatttttctagggtcttctgattgaaattcaattttcttctgtgtatata
tataatcttttctttgattcatattttacttatatatttttatgcacttt
gagtgtgtatatgccatgctccataaaatacacgtaggagtcagaggggc
acttgagggattagtccttttgactctactgtgtg
gaattcttggatttaagcattgcatggactattgtatataatgggatatg
aggatatgacattagaaatatcagtaggaatttttaaaaatttgagcttt
ttgttatgcaggattatgtcattaaatcagcacagtccaaactgaagcaa
gaaaaccatatctctcaaattctataaaagggtatcttacttctattagg
gtgtggattgcatccaaacctctttctagaaatttaatgattaatggcac
cattagacatatatcattactttaagctttcaaatttggacagcttttga
cttatgctctcctagcataatcttgaacttgggagggaggtgatgagaac
cagtaatgctataaataataaataagttttaaatcatgaaagtttaaata
tgaaacactagcatcaaagcaaaacaaacatacttcattattgttatgga
aagttaatgtgatattttcattaggttttgataatctcatgtagtatatt
ttaatgaagttcatttccattgtctaccaacccatcttcttgttatcttt
taaagaaaagcaagtccaatttcgtgtcatttaaacacttgtaggtgtat
tcacacccttaagaaaactgaaactcatacttctagcagctatgaattgc
caagaactcttcagctaggtgttggatttatttgtcatccaaaaccttat
gggacttttatctaattaatatctcatttatggtttttttgtgatgacag
ttaagataaatttaaagactattagtacagaacattgttatgcccttcct
tagagcgaactaaaggaacgccaagaaaacacctgtcccactgaccttgg
aataaaaaaaaaaaagcaaaccaaaaaactcttagtttgatactaacatt
gtataaaaatccgcacttcaactgtccaattatacttatcacagtgcatg
catcctggcatataaatcacatattat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_31506396_31507277
seq2: B6Ng01-051J19.b_45_929

seq1  GAATTCATTTTTCTACACAAACGACAAGCAATTGTAGCATGCAAGATCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTCTACACAAACGACAAGCAATTGTAGCATGCAAGATCAA  50

seq1  CTTCCTTTACATTGGCAACTTTTGAGTTTTATCCTGACTTGCCTCATTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTACATTGGCAACTTTTGAGTTTTATCCTGACTTGCCTCATTGC  100

seq1  TTTGTTGCTGTTTATAGAAGTCTCCATTCCTGCTATGTTGCCTCCACCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGCTGTTTATAGAAGTCTCCATTCCTGCTATGTTGCCTCCACCTG  150

seq1  TCATCTGTATTTTTATTCCCAAACTTATTTCTGGGGGTTCTTTGGTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGTATTTTTATTCCCAAACTTATTTCTGGGGGTTCTTTGGTTGTT  200

seq1  TGTGAGTTGTATGGTATTTTCTGGGCTCTCTGTAGTTCTTGTTCCTATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTTGTATGGTATTTTCTGGGCTCTCTGTAGTTCTTGTTCCTATCA  250

seq1  AGTTTCATCTAACTTTTACCTTTTGCTTTGAAACCCAATCATCTGCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCATCTAACTTTTACCTTTTGCTTTGAAACCCAATCATCTGCCTTT  300

seq1  ATTCTTCCTTCAAACTGTTTCCACTTCTGTATGTTAGCCTCTTTGAAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCCTTCAAACTGTTTCCACTTCTGTATGTTAGCCTCTTTGAAGTG  350

seq1  GATTCTCCTTTGAAATTTAGCCATCATTTCCCAAATACTTTTATTTTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTCCTTTGAAATTTAGCCATCATTTCCCAAATACTTTTATTTTGGT  400

seq1  GTGTAAACGTTTACTTATTCTCATTGAGAATACCAGGTTAATACTTTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAACGTTTACTTATTCTCATTGAGAATACCAGGTTAATACTTTTCA  450

seq1  TGTACACTACTCACTTTCCTAATCAGTTTCACTTACATGAAAGTTAACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACTACTCACTTTCCTAATCAGTTTCACTTACATGAAAGTTAACTT  500

seq1  TCTTTTTCATTGTTTTCTTTTTGTAATTTGCTATGGCTGTTTTTATTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCATTGTTTTCTTTTTGTAATTTGCTATGGCTGTTTTTATTTAT  550

seq1  TTTGGCCTTTCATTTCTCCCTTTCTCCCTTTCTTCCTTCTCTCTCTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCTTTCATTTCTCCCTTTCTCCCTTTCTTCCTTCTCTCTCTCTCT  600

seq1  CTCTCTCTCTCTCTCTCGATTTTGAGTTTTGCTAGTTTACAAAGTTTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCGATTTTGAGTTTTGCTAGTTTACAAAGTTTACT  650

seq1  TTTGATTATTTTTTTAAATTCTCATTTG-TTTGTCCACTCTCATAAGACT  699
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTTGATTATTTTTTTAAATTCTCATTTGTTTTGTCCACTCTCATAAGACT  700

seq1  AA-TTTTCTAGGGTCTTCTGATTGAAATTCAATTTTCTTCTGTGTATATA  748
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCTAGGGTCTTCTGATTGAAATTCAATTTTCTTCTGTGTATATA  750

seq1  TATAATCTTTTCTTTGATTCATATTTTACTTATATA-TTTTATGCACTTT  797
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TATAATCTTTTCTTTGATTCATATTTTACTTATATATTTTTATGCACTTT  800

seq1  GAGTGTGTATATGCCATGCTCCATAAAATACACGTAGGAGTCAGAGGGGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGTATATGCCATGCTCCATAAAATACACGTAGGAGTCAGAGGGGC  850

seq1  ACTTGAGGGAGTCAGTCC-TTTGACTCTACTGTGTG  882
      |||||||||| | ||||| |||||||||||||||||
seq2  ACTTGAGGGA-TTAGTCCTTTTGACTCTACTGTGTG  885

seq1: chr1_31684718_31685703
seq2: B6Ng01-051J19.g_65_1041 (reverse)

seq1  ATAATTATGTGATTTATATGCCAGGAATGCCATGCACTGGTGAATAAGTA  50
      |||| |||||||||||||||||||| ||| |||||||| ||| |||||||
seq2  ATAA-TATGTGATTTATATGCCAGG-ATG-CATGCACT-GTG-ATAAGTA  45

seq1  TATATTGGACAGTTGAAGTGCGGATATTTATTACATATTGTTAGTATCAA  100
      || |||||||||||||||||||||| |||||   | | |||||||||| |
seq2  TA-ATTGGACAGTTGAAGTGCGGATTTTTAT---ACAATGTTAGTATC-A  90

seq1  AACTAAGAGTTTTTTGGTTTTGCTTTTTTTTTTTTATTCCAAGGTCAGTG  150
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AACTAAGAGTTTTTTGG-TTTGCTTTTTTTTTTTTATTCCAAGGTCAGTG  139

seq1  GGACAGGTGTTTTCTTGGCGTTCCTTTAGTTCGCTCTAAGGAAGGGCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGTGTTTTCTTGGCGTTCCTTTAGTTCGCTCTAAGGAAGGGCATA  189

seq1  ACAATGTTCTGTACTAATAGTCTTTAAATTTATCTTAACTGTCATCACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTTCTGTACTAATAGTCTTTAAATTTATCTTAACTGTCATCACAA  239

seq1  AAAAACCATAAATGAGATATTAATTAGAT-AAAGTCCCATAAGGTTTTGG  299
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAAAACCATAAATGAGATATTAATTAGATAAAAGTCCCATAAGGTTTTGG  289

seq1  ATGAC-AATAAATCCAACACCTAGCTGAAGAGTTCTTGGCAATTCATAGC  348
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAATAAATCCAACACCTAGCTGAAGAGTTCTTGGCAATTCATAGC  339

seq1  TGCTAGAAGTATGAGTTTCAGTTTTCTTAAGGGTGTGAATACACCTACAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGAAGTATGAGTTTCAGTTTTCTTAAGGGTGTGAATACACCTACAA  389

seq1  GTGTTTAAATGACACGAAATTGGACTTGCTTTTCTTTAAAAGATAACAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAAATGACACGAAATTGGACTTGCTTTTCTTTAAAAGATAACAAG  439

seq1  AAGATGGGTTGGTAGACAATGGAAATGAACTTCATTAAAATATACTACAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGGTTGGTAGACAATGGAAATGAACTTCATTAAAATATACTACAT  489

seq1  GAGATTATCAAAACCTAATGAAAATATCACATTAACTTTCCATAACAATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTATCAAAACCTAATGAAAATATCACATTAACTTTCCATAACAATA  539

seq1  ATGAAGTATGTTTGTTTTGCTTTGATGCTAGTGTTTCATATTTAAACTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGTATGTTTGTTTTGCTTTGATGCTAGTGTTTCATATTTAAACTTT  589

seq1  CATGATTTAAAACTTATTTATTATTTATAGCATTACTGGTTCTCATCACC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATTTAAAACTTATTTATTATTTATAGCATTACTGGTTCTCATCACC  639

seq1  TCCCTCCCAAGTTCAAGATTATGCTAGGAGAGCATAAGTCAAAAGCTGTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCAAGTTCAAGATTATGCTAGGAGAGCATAAGTCAAAAGCTGTC  689

seq1  CAAATTTGAAAGCTTAAAGTAATGATATATGTCTAATGGTGCCATTAATC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTGAAAGCTTAAAGTAATGATATATGTCTAATGGTGCCATTAATC  739

seq1  ATTAAATTTCTAGAAAGAGGTTTGGATGCAATCCACACCCTAATAGAAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATTTCTAGAAAGAGGTTTGGATGCAATCCACACCCTAATAGAAGT  789

seq1  AAGATACCCTTTTATAGAATTTGAGAGATATGGTTTTCTTGCTTCAGTTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACCCTTTTATAGAATTTGAGAGATATGGTTTTCTTGCTTCAGTTT  839

seq1  GGACTGTGCTGATTTAATGACATAATCCTGCATAACAAAAAGCTCAAATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTGCTGATTTAATGACATAATCCTGCATAACAAAAAGCTCAAATT  889

seq1  TTTAAAAATTCCTACTGATATTTCTAATGTCATATCCTCATATCCCATTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAATTCCTACTGATATTTCTAATGTCATATCCTCATATCCCATTA  939

seq1  TATACAATAGTCCATGCAATGCTTAAATCCAAGAATTC  986
      ||||||||||||||||||||||||||||||||||||||
seq2  TATACAATAGTCCATGCAATGCTTAAATCCAAGAATTC  977