BAC Information

Click to search

BAC

Clone NameB6Ng01-051L19
Chromosome1 (Build37)
Map Location 45,546,540 - 45,651,307
singlet/doubletdoublet
Overlap geneCol5a2, EG666799, LOC631429
Upstream geneGulp1, LOC100041738, LOC100041752, LOC383640, Col3a1
Downstream geneLOC666814, EG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b, LOC666855
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051L19.bB6Ng01-051L19.g
ACCDH875290DH875291
length1,086986
definitionDH875290|Mus musculus domesticus DNA, BAC clone: B6Ng01-051L19, 5' end.DH875291|Mus musculus domesticus DNA, BAC clone: B6Ng01-051L19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,650,223 - 45,651,307)(45,546,540 - 45,547,524)
sequence
gaattctattccaggtggttccagttagaccttttgtgtttgcattcctg
ttttatgtaagattccggttacctcagttgtaccttgcgaatatgtcacc
caacttccttattgtcctctacataaaaagtctgatgctcgagttgtaaa
attacactcacattccacatgaactctcctgtgtgtgtctgtttgtcgct
catccacactttgcccacccgcgtggagagaccccgttccacgcagacac
agggacccagagggtctgtggcaaattagcaatcaagaaaatgtctcaca
agtttgtccacagtccattgagataacagcaatcactcagttgaggttcc
ctcctcttcgatgtgtcaaatggcacacagcacccagtcacacttgctga
aggaagctaattttatttttttctcttttgtacattttcctcttttcaat
agtaactgttttgccatcaaggaccagcgactctttacaaatgaattggg
tagtatgtataattagtaagtttatgttagtcttatttaattaaaaataa
actcaattctttgatgcactaaactgttcttttgggatgttagaaataaa
tggtatgagatgaggttgtcccttgaagtagtcttggagattgatcaagc
acttcagctacaggaataggccaaagtttggctaggggttggcctaggtt
atttggctatcacaactgaagttggcactcagctctcttggaccatggtg
catgctcaccctctctcaccatactgctcctgaacacttgactattttgt
gggcaggttcaactttctatcttcctggcaaaagaggaacaaaatctcaa
gcacagtcaaacaactaatcacccaaagagtactacattataaatcttcc
ttcagtgaacacagataacagatacatagtactttcctcatgatttaaag
agcaagttttagttataaagttgaagatggcagtattcatagtcatagga
tcagaaattatgacttataagtaaattttatatacatatataacatatta
tataccattatacttttgatcatatataatatttat
gaattccaggacagccagggctatgtagagagcccctctgaaaaacaaca
acaaaaacgaaatcagcaaagaaaggaaatggcatctgcataaagcaaca
ggtaagagactgcaggcaagtgtgattattatgtcagactcctgaatgct
tttgactcaggagacattaaccacgtggtagcaaaattgaggtttgtttt
gttttgttttatttagctttgctttgtttttttgtttgtttgtttgtttg
tttgtttgttttttaactaagaactgggcctgctcttctttctaagtgca
atagttctcaacctgtgggttatgaccacaggggctgaagaactttttca
caggggttgcctaagaccattggaacacagatgtttacattgaaaatcat
aacagaaacaaaattacagttataaagtagcagcaaaaataatgttatgg
ttggggggggtcactaaaacataaggaactatattaaaaggtcacagcat
tagaaagtttggaaaccactgttctagtacatacattccaccaaaggaat
acacagagggtgagtacatgaggcagcccaagggaactgcatatttacca
aatatatgaaccaaactttgcatgtcaactgcatgaaaatattgttatgt
tgtactaattttattttcatttttgtcaccctccattttatctgaacaca
aatatccacagtgaaacctgagtgtgtttgttgattcatcttaaatgaat
tctatttcaatttgccttgatactatactaaaaagttgaaattgattcta
atcatttccttcttcaataaaccttcaccgaagtataatgaaatcatcct
tgagctgtaagattgtgaaagccagaatctgtggatgacttgggaaacct
ctctttagacctgtaggatgctgtacccaaggactcattagttccttaca
catggagcagtcaacattctagctagatgaggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_45650223_45651307
seq2: B6Ng01-051L19.b_41_1126 (reverse)

seq1  ATAATTATTATATATTAATTAAATGTATAATTGTATTATAATATGTTATA  50
      |||| ||||||||| | || ||| ||||||| ||| ||||||||||||||
seq2  ATAAATATTATATA-TGATCAAAAGTATAATGGTA-TATAATATGTTATA  48

seq1  TATGTATATAAAATTTACTTAT-AGTCATAA-TTCTGATCCTATGACTAT  98
      |||||||||||||||||||||| |||||||| ||||||||||||||||| 
seq2  TATGTATATAAAATTTACTTATAAGTCATAATTTCTGATCCTATGACTA-  97

seq1  TGAATACTGCAATCTTCAACTTTATAACTAAAACTTGCTCTTTAAATCAT  148
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGAATACTGCCATCTTCAACTTTATAACTAAAACTTGCTCTTTAAATCAT  147

seq1  GAGGAAAGTACTATGTATCTG-TATCTGTGTTCACTG-AGGAAGATTTAT  196
      ||||||||||||||||||||| ||||||||||||||| ||||||||||||
seq2  GAGGAAAGTACTATGTATCTGTTATCTGTGTTCACTGAAGGAAGATTTAT  197

seq1  AATGTAGTACTCTTTGGGTGATTAGTTGTTTGACTGTGCTTGAGATTTTG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGTACTCTTTGGGTGATTAGTTGTTTGACTGTGCTTGAGATTTTG  247

seq1  TTCCTCTTTTGCCAGGAAGATAGAAAGTTGAACCTGCCCACAAAATAGTC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTTTGCCAGGAAGATAGAAAGTTGAACCTGCCCACAAAATAGTC  297

seq1  AAGTGTTCAGGAGCAGTATGGTGAGAGAGGGTGAGCATGCACCATGGTCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTCAGGAGCAGTATGGTGAGAGAGGGTGAGCATGCACCATGGTCC  347

seq1  AAGAGAGCTGAGTGCCAACTTCAGTTGTGATAGCCAAATAACCTAGGCCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGCTGAGTGCCAACTTCAGTTGTGATAGCCAAATAACCTAGGCCA  397

seq1  ACCCCTAGCCAAACTTTGGCCTATTCCTGTAGCTGAAGTGCTTGATCAAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTAGCCAAACTTTGGCCTATTCCTGTAGCTGAAGTGCTTGATCAAT  447

seq1  CTCCAAGACTACTTCAAGGGACAACCTCATCTCATACCATTTATTTCTAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGACTACTTCAAGGGACAACCTCATCTCATACCATTTATTTCTAA  497

seq1  CATCCCAAAAGAACAGTTTAGTGCATCAAAGAATTGAGTTTATTTTTAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCAAAAGAACAGTTTAGTGCATCAAAGAATTGAGTTTATTTTTAAT  547

seq1  TAAATAAGACTAACATAAACTTACTAATTATACATACTACCCAATTCATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGACTAACATAAACTTACTAATTATACATACTACCCAATTCATT  597

seq1  TGTAAAGAGTCGCTGGTCCTTGATGGCAAAACAGTTACTATTGAAAAGAG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGAGTCGCTGGTCCTTGATGGCAAAACAGTTACTATTGAAAAGAG  647

seq1  GAAAATGTACAAAAGAGAAAAAAATAAAATTAGCTTCCTTCAGCAAGTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTACAAAAGAGAAAAAAATAAAATTAGCTTCCTTCAGCAAGTGT  697

seq1  GACTGGGTGCTGTGTGCCATTTGACACATCGAAGAGGAGGGAACCTCAAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGGTGCTGTGTGCCATTTGACACATCGAAGAGGAGGGAACCTCAAC  747

seq1  TGAGTGATTGCTGTTATCTCAATGGACTGTGGACAAACTTGTGAGACATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGATTGCTGTTATCTCAATGGACTGTGGACAAACTTGTGAGACATT  797

seq1  TTCTTGATTGCTAATTTGCCACAGACCCTCTGGGTCCCTGTGTCTGCGTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGATTGCTAATTTGCCACAGACCCTCTGGGTCCCTGTGTCTGCGTG  847

seq1  GAACGGGGTCTCTCCACGCGGGTGGGCAAAGTGTGGATGAGCGACAAACA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGGGGTCTCTCCACGCGGGTGGGCAAAGTGTGGATGAGCGACAAACA  897

seq1  GACACACACAGGAGAGTTCATGTGGAATGTGAGTGTAATTTTACAACTCG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACACAGGAGAGTTCATGTGGAATGTGAGTGTAATTTTACAACTCG  947

seq1  AGCATCAGACTTTTTATGTAGAGGACAATAAGGAAGTTGGGTGACATATT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAGACTTTTTATGTAGAGGACAATAAGGAAGTTGGGTGACATATT  997

seq1  CGCAAGGTACAACTGAGGTAACCGGAATCTTACATAAAACAGGAATGCAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAGGTACAACTGAGGTAACCGGAATCTTACATAAAACAGGAATGCAA  1047

seq1  ACACAAAAGGTCTAACTGGAACCACCTGGAATAGAATTC  1085
      |||||||||||||||||||||||||||||||||||||||
seq2  ACACAAAAGGTCTAACTGGAACCACCTGGAATAGAATTC  1086

seq1: chr1_45546540_45547524
seq2: B6Ng01-051L19.g_66_1051

seq1  GAATTCCAGGACAGCCAGGGCTATGTAGAGAGCCCCTCTGAAAAACAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTATGTAGAGAGCCCCTCTGAAAAACAACA  50

seq1  ACAAAAACGAAATCAGCAAAGAAAGGAAATGGCATCTGCATAAAGCAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAACGAAATCAGCAAAGAAAGGAAATGGCATCTGCATAAAGCAACA  100

seq1  GGTAAGAGACTGCAGGCAAGTGTGATTATTATGTCAGACTCCTGAATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGAGACTGCAGGCAAGTGTGATTATTATGTCAGACTCCTGAATGCT  150

seq1  TTTGACTCAGGAGACATTAACCACGTGGTAGCAAAATTGAGGTTTGTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTCAGGAGACATTAACCACGTGGTAGCAAAATTGAGGTTTGTTTT  200

seq1  GTTTTGTTTTATTTAGCTTTGCTTTGTTTTTTTGTTTGTTTGTTTGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTATTTAGCTTTGCTTTGTTTTTTTGTTTGTTTGTTTGTTTG  250

seq1  TTTGTTTGTTTTTTAACTAAGAACTGGGCCTGCTCTTCTTTCTAAGTGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTGTTTTTTAACTAAGAACTGGGCCTGCTCTTCTTTCTAAGTGCA  300

seq1  ATAGTTCTCAACCTGTGGGTTATGACCACAGGGGCTGAAGAACTTTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCTCAACCTGTGGGTTATGACCACAGGGGCTGAAGAACTTTTTCA  350

seq1  CAGGGGTTGCCTAAGACCATTGGAACACAGATGTTTACATTGAAAATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTTGCCTAAGACCATTGGAACACAGATGTTTACATTGAAAATCAT  400

seq1  AACAGAAACAAAATTACAGTTATAAAGTAGCAGCAAAAATAATGTTATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAACAAAATTACAGTTATAAAGTAGCAGCAAAAATAATGTTATGG  450

seq1  TTGGGGGGGGTCACTAAAACATAAGGAACTATATTAAAAGGTCACAGCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGGGGTCACTAAAACATAAGGAACTATATTAAAAGGTCACAGCAT  500

seq1  TAGAAAGTTTGGAAACCACTGTTCTAGTACATACATTCCACCAAAGGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAGTTTGGAAACCACTGTTCTAGTACATACATTCCACCAAAGGAAT  550

seq1  ACACAGAGGGTGAGTACATGAGGCAGCCCAAGGGAACTGCATATTTACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGAGGGTGAGTACATGAGGCAGCCCAAGGGAACTGCATATTTACCA  600

seq1  AATATATGAACCAAACTTTGCATGTCAACTGCATGAAAATATTGTTATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATGAACCAAACTTTGCATGTCAACTGCATGAAAATATTGTTATGT  650

seq1  TGTACTAATTTTA-TTTCA-TTTTGTCACCCTCCA-TTTATCTGAACACA  697
      ||||||||||||| ||||| ||||||||||||||| ||||||||||||||
seq2  TGTACTAATTTTATTTTCATTTTTGTCACCCTCCATTTTATCTGAACACA  700

seq1  AATATCCACAGTGAAACCTGAGTGTGTTTGTTGATTCATCTTAAATGAAT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCACAGTGAAACCTGAGTGTGTTTGTTGATTCATCTTAAATGAAT  750

seq1  TCTATTTCAATTTGCCTTGATACTATACTAAAAAGTTGAAA-TGATTCTA  796
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCTATTTCAATTTGCCTTGATACTATACTAAAAAGTTGAAATTGATTCTA  800

seq1  ATCATTTCCTTCTTCAATAAACC-TCACCGAAGTATAATGAAATCATCC-  844
      ||||||||||||||||||||||| ||||||||||||||||||||||||| 
seq2  ATCATTTCCTTCTTCAATAAACCTTCACCGAAGTATAATGAAATCATCCT  850

seq1  TGAGCTGTAAGATTGTGAAAGCCAGAAGCTGTGGATGACTGGAGAAACCT  894
      ||||||||||||||||||||||||||| |||||||||||| | |||||||
seq2  TGAGCTGTAAGATTGTGAAAGCCAGAATCTGTGGATGACTTGGGAAACCT  900

seq1  CTCTTTCAGACATGGCAGGATGCTGTACTCAGGGACTCA-TAGTTTCCTA  943
      |||||| |||| | | |||||||||||| || ||||||| ||||| | ||
seq2  CTCTTT-AGACCT-GTAGGATGCTGTACCCAAGGACTCATTAGTTCCTTA  948

seq1  CACAATGGAGCCAGTCAACATTCTAGCATGGATGAAGGAGGG  985
      ||| |||||| |||||||||||||||| | |||| |||||||
seq2  CAC-ATGGAG-CAGTCAACATTCTAGC-TAGATG-AGGAGGG  986