BAC Information

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BAC

Clone NameB6Ng01-052C01
Chromosome1 (Build37)
Map Location 165,247,237 - 165,373,841
singlet/doubletdoublet
Overlap geneScyl1bp1
Upstream geneDnm3, 5630401D24Rik, Vamp4, LOC435651, Myoc, Bat2d, Fmo4, Fmo1, Fmo2, Fmo6, Fmo3, 4921528O07Rik, Prrx1, LOC100039597
Downstream geneLOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052C01.bB6Ng01-052C01.g
ACCDH875574DH875575
length1,1741,135
definitionDH875574|Mus musculus domesticus DNA, BAC clone: B6Ng01-052C01, 5' end.DH875575|Mus musculus domesticus DNA, BAC clone: B6Ng01-052C01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,372,671 - 165,373,841)(165,247,237 - 165,248,388)
sequence
gaattcatctttttttttttcacagagcctcataaatgcattcattcata
tcagtgcagattgagctgaaatatgtagactgtgtaacatgggcaacttg
ttctctttgggggcagtacatggagagataacaactgctgacaacttcat
gctccatcccactctacggaaacgcatgacttatcgatctgtaccctagg
ccttgttctctgcttgactgacggctggtaatcacatctgcacatcgaca
gcctgtccagcagcaggtttcttccatttggttggaattttcttaatgca
atatttctattcaacacttcaaagccttctcaaaacagctccctttccgt
gtaatgcatgccctgcattccagcttcttctgtttggaactctgatacca
aggcaagctgaaaaacagcaactatgatgaccaagaatagaaaataaaat
ttggaagtaagaaagaaaaactgtagggaacacagtctgcccttcttcat
tagcaaggttaaagaagtcaaaatattccagacttaaaaattctcggaga
tcatttcatcttgacagctcattccaaatatgtggagactatgcttgggg
tgatgaacagggaggaagaatgttacaggttagtgaaataataattacat
agacaaaggttacaaacggtactgtggacagaagtctatgaactcaccag
gaagcaataggacagagtttaataagtggaattttaaaaagaaaaaaatt
gaaaagcaaaacacacacatacacaaacatacacacaaaaccaaaatgat
aaaacaataaaatataagtaacctagaaatttgcaagttgagaatcaacc
tctcactcccctaagagtttcgacattgaatcacaaacataagaatcgga
aaggtacttacagtcccaactcttctttccttcacacatgtcaagtattt
ttgtatttattgtattttacgtatttaaagtatgtaacctccatatcatc
tggcactgctggatgatacggaaagcacccataaaactatctgttggata
aaggaggtcatcgaattacctttcacattaaaagacaccttttaaggctc
ttgaataaaccatccctcagtgactattgttggctgatggccaggtttcc
aggcccgaccgacttaaagaccag
gaattccagaacagagtaaccatctggcagaaatgctcaggagaggaagc
tgtggctaccagtacacagttatcttcaaggaaggctgctggccaggcct
gagcactctgaaagtcctagaggaaagtggcttgggtttgcctttgtctt
tctttaatcaccattttgtcttccaaagtgacctccttggaggaaggttg
gaacatgtgtaggctttcccttgcctttaactttgactcctacccatcaa
tcattatttataaaagtctgtaaccttggatgacgtaacttatagagttc
tcttcctagtaagtccatccagtattgggcactggatttctacccacttt
ctggtctagcccctctaaaagcatttttgttttcagacttcccaccctga
cctcagtgggagcaaaggtagagctaggaatgagagttgccaagagacta
gactagggtaagaaggaattttggttgacagccatgtagcattgggtggt
cctgcctacaggcttgatagtgattattgtctaggatgttcctggtgcaa
gaagctcgcagaccattgcttcatctggttaacaggatgtcccccactct
aggcagccccccctctgagcgagaagccgagacttgtgctctctgacatc
ttaatttgctgacatgataatcacacatgacaaacacaggttccctgata
cataaagaacacggtattaccctcatgcaaacaacacgccatgtcagggg
tggaagtgctttcctgatcatggctgacaatctggtacatagtcattaat
agagaaaccaggggtgaaaggaagcgttctctggattctgcagggtgccc
ataccttaatatttctatggagcttttatgctagaccctattgtgtattt
ccaatctgtttcctgtatcctaagtggcaaactaggaaattcctcctgtc
acacacacacacacacacacacacacacacacaacaaagtggatgttccc
tacttaacccaactctgtccaatttttctattgtagtttaaactttgcag
taataaaagaactaagactaggcacactcatcagtgattggattatgggt
ctgttctactaggatgtgggaggtagtaaatcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_165372671_165373841
seq2: B6Ng01-052C01.b_43_1216 (reverse)

seq1  CTGGTC----------TGGGGCCTGGGAAACCTTGCCATCAGCCAGACAT  40
      ||||||          | |||||| |||||||| |||||||||||   ||
seq2  CTGGTCTTTAAGTCGGTCGGGCCT-GGAAACCTGGCCATCAGCCAACAAT  49

seq1  AGTCACTGA-GGAT-GTTTATTCAAGAGCTTTAAAAAGTGTCTTTTTAAT  88
      ||||||||| |||| |||||||||||||| |||||| ||||| |||||||
seq2  AGTCACTGAGGGATGGTTTATTCAAGAGCCTTAAAAGGTGTC-TTTTAAT  98

seq1  GTGAAAGTTAATTCGAATGACCTCATTTATCCAACAGATAGTTTTTAATG  138
      ||||||| ||||||| |||||||| ||||||||||||||||||||  |||
seq2  GTGAAAGGTAATTCG-ATGACCTCCTTTATCCAACAGATAGTTTT--ATG  145

seq1  TGTGCTTTCTGTAATCATTCCAGCAGTGCCAGATGATATGGAGGTTACAT  188
       |||||||| || |||| ||||||||||||||||||||||||||||||||
seq2  GGTGCTTTCCGT-ATCA-TCCAGCAGTGCCAGATGATATGGAGGTTACAT  193

seq1  ACTTTAAATACGTTAAAATACAATAAATACAAAAAATACTTGACATGTGT  238
      |||||||||||| ||||||||||||||||| |||||||||||||||||||
seq2  ACTTTAAATACG-TAAAATACAATAAATAC-AAAAATACTTGACATGTGT  241

seq1  GAAGGAAAGAAGAGTTGGGACTGTAAGTACCTTTCCGATTCTTATGTTTG  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAGAAGAGTTGGGACTGTAAGTACCTTTCCGATTCTTATGTTTG  291

seq1  TGATTCAATGTCGAAACTCTTAGGGGAGTGAGAGGTTGATTCTCAACTTG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCAATGTCGAAACTCTTAGGGGAGTGAGAGGTTGATTCTCAACTTG  341

seq1  CAAATTTCTAGGTTACTTATATTTTATTGTTTTATCATTTTGGTTTTGTG  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTCTAGGTTACTTATATTTTATTGTTTTATCATTTTGGTTTTGTG  391

seq1  TGTATGTTTGTGTATGTGTGTGTTTTGCTTTTCAATTTTTTTCTTTTTAA  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTTTGTGTATGTGTGTGTTTTGCTTTTCAATTTTTTTCTTTTTAA  441

seq1  AATTCCACTTATTAAACTCTGTCCTATTGCTTCCTGGTGAGTTCATAGAC  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCACTTATTAAACTCTGTCCTATTGCTTCCTGGTGAGTTCATAGAC  491

seq1  TTCTGTCCACAGTACCGTTTGTAACCTTTGTCTATGTAATTATTATTTCA  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTCCACAGTACCGTTTGTAACCTTTGTCTATGTAATTATTATTTCA  541

seq1  CTAACCTGTAACATTCTTCCTCCCTGTTCATCACCCCAAGCATAGTCTCC  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTGTAACATTCTTCCTCCCTGTTCATCACCCCAAGCATAGTCTCC  591

seq1  ACATATTTGGAATGAGCTGTCAAGATGAAATGATCTCCGAGAATTTTTAA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTGGAATGAGCTGTCAAGATGAAATGATCTCCGAGAATTTTTAA  641

seq1  GTCTGGAATATTTTGACTTCTTTAACCTTGCTAATGAAGAAGGGCAGACT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAATATTTTGACTTCTTTAACCTTGCTAATGAAGAAGGGCAGACT  691

seq1  GTGTTCCCTACAGTTTTTCTTTCTTACTTCCAAATTTTATTTTCTATTCT  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCCCTACAGTTTTTCTTTCTTACTTCCAAATTTTATTTTCTATTCT  741

seq1  TGGTCATCATAGTTGCTGTTTTTCAGCTTGCCTTGGTATCAGAGTTCCAA  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATCATAGTTGCTGTTTTTCAGCTTGCCTTGGTATCAGAGTTCCAA  791

seq1  ACAGAAGAAGCTGGAATGCAGGGCATGCATTACACGGAAAGGGAGCTGTT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGAAGCTGGAATGCAGGGCATGCATTACACGGAAAGGGAGCTGTT  841

seq1  TTGAGAAGGCTTTGAAGTGTTGAATAGAAATATTGCATTAAGAAAATTCC  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAGGCTTTGAAGTGTTGAATAGAAATATTGCATTAAGAAAATTCC  891

seq1  AACCAAATGGAAGAAACCTGCTGCTGGACAGGCTGTCGATGTGCAGATGT  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAATGGAAGAAACCTGCTGCTGGACAGGCTGTCGATGTGCAGATGT  941

seq1  GATTACCAGCCGTCAGTCAAGCAGAGAACAAGGCCTAGGGTACAGATCGA  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACCAGCCGTCAGTCAAGCAGAGAACAAGGCCTAGGGTACAGATCGA  991

seq1  TAAGTCATGCGTTTCCGTAGAGTGGGATGGAGCATGAAGTTGTCAGCAGT  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCATGCGTTTCCGTAGAGTGGGATGGAGCATGAAGTTGTCAGCAGT  1041

seq1  TGTTATCTCTCCATGTACTGCCCCCAAAGAGAACAAGTTGCCCATGTTAC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATCTCTCCATGTACTGCCCCCAAAGAGAACAAGTTGCCCATGTTAC  1091

seq1  ACAGTCTACATATTTCAGCTCAATCTGCACTGATATGAATGAATGCATTT  1138
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTACATATTTCAGCTCAATCTGCACTGATATGAATGAATGCATTT  1141

seq1  ATGAGGCTCTGTGAAAAAAAAAAAGATGAATTC  1171
      |||||||||||||||||||||||||||||||||
seq2  ATGAGGCTCTGTGAAAAAAAAAAAGATGAATTC  1174

seq1: chr1_165247237_165248388
seq2: B6Ng01-052C01.g_68_1202

seq1  GAATTCCAGAACAGAGTAACCATCTGGCAGAAATGCTCAGGAGAGGAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAACAGAGTAACCATCTGGCAGAAATGCTCAGGAGAGGAAGC  50

seq1  TGTGGCTACCAGTACACAGTTATCTTCAAGGAAGGCTGCTGGCCAGGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTACCAGTACACAGTTATCTTCAAGGAAGGCTGCTGGCCAGGCCT  100

seq1  GAGCACTCTGAAAGTCCTAGAGGAAAGTGGCTTGGGTTTGCCTTTGTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTCTGAAAGTCCTAGAGGAAAGTGGCTTGGGTTTGCCTTTGTCTT  150

seq1  TCTTTAATCACCATTTTGTCTTCCAAAGTGACCTCCTTGGAGGAAGGTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAATCACCATTTTGTCTTCCAAAGTGACCTCCTTGGAGGAAGGTTG  200

seq1  GAACATGTGTAGGCTTTCCCTTGCCTTTAACTTTGACTCCTACCCATCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGTGTAGGCTTTCCCTTGCCTTTAACTTTGACTCCTACCCATCAA  250

seq1  TCATTATTTATAAAAGTCTGTAACCTTGGATGACGTAACTTATAGAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATTTATAAAAGTCTGTAACCTTGGATGACGTAACTTATAGAGTTC  300

seq1  TCTTCCTAGTAAGTCCATCCAGTATTGGGCACTGGATTTCTACCCACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTAGTAAGTCCATCCAGTATTGGGCACTGGATTTCTACCCACTTT  350

seq1  CTGGTCTAGCCCCTCTAAAAGCATTTTTGTTTTCAGACTTCCCACCCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTAGCCCCTCTAAAAGCATTTTTGTTTTCAGACTTCCCACCCTGA  400

seq1  CCTCAGTGGGAGCAAAGGTAGAGCTAGGAATGAGAGTTGCCAAGAGACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTGGGAGCAAAGGTAGAGCTAGGAATGAGAGTTGCCAAGAGACTA  450

seq1  GACTAGGGTAAGAAGGAATTTTGGTTGACAGCCATGTAGCATTGGGTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGGGTAAGAAGGAATTTTGGTTGACAGCCATGTAGCATTGGGTGGT  500

seq1  CCTGCCTACAGGCTTGATAGTGATTATTGTCTAGGATGTTCCTGGTGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTACAGGCTTGATAGTGATTATTGTCTAGGATGTTCCTGGTGCAA  550

seq1  GAAGCTCGCAGACCATTGCTTCATCTGGTTAACAGGATGTCCCCCACTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCGCAGACCATTGCTTCATCTGGTTAACAGGATGTCCCCCACTCT  600

seq1  AGGCAGCCCCCCCTCTGAGCGAGAAGCCGAGACTTGTGCTCTCTGACATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGCCCCCCCTCTGAGCGAGAAGCCGAGACTTGTGCTCTCTGACATC  650

seq1  TTAATTTGCTGACATGATAATCACACATGACAAACACAGGTTCCCTGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTGCTGACATGATAATCACACATGACAAACACAGGTTCCCTGATA  700

seq1  CATAAAGAACACGGTATTACCCTCATGCAAACAACACGCCATGTCAGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGAACACGGTATTACCCTCATGCAAACAACACGCCATGTCAGGGG  750

seq1  TGGAAGTGCTTTCCTGATCATGGCTGACAATCTGGTACATAGTCATTAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTGCTTTCCTGATCATGGCTGACAATCTGGTACATAGTCATTAAT  800

seq1  AGAGAAACCAGGGGTGAAAGGAAGCGTTCTCTGGATTCTGCAGGGTGCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACCAGGGGTGAAAGGAAGCGTTCTCTGGATTCTGCAGGGTGCCC  850

seq1  ATACCTTAATATTTCTATGGAGCTTTTATGCTAGACCCTATTGTGTATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTAATATTTCTATGGAGCTTTTATGCTAGACCCTATTGTGTATTT  900

seq1  CCAATTCTGTTTCCTGTAATCCTAAGTGGCAAACTAGGAAAATTCCTCCT  950
      |||| |||||||||||| |||||||||||||||||||| |||||||||||
seq2  CCAA-TCTGTTTCCTGT-ATCCTAAGTGGCAAACTAGG-AAATTCCTCCT  947

seq1  GTCCACACACACACACACACACACACACACACACACACACAAAGTGGATG  1000
      || |||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GT-CACACACACACACACACACACACACACACACACA-ACAAAGTGGATG  995

seq1  TTCCCTACTTAACCCCAACTCTGTCCAATATTTCTATTGTAAGGTTTTAA  1050
      |||||||||||| |||||||||||||||| |||||||||||  ||||  |
seq2  TTCCCTACTTAA-CCCAACTCTGTCCAATTTTTCTATTGTA--GTTT--A  1040

seq1  AACTTTGCAGTAATAAAAGAAACTAAAGACTAAGGCACACTTCCTATCAG  1100
      ||||||||||||||||||| |||| |||||| |||||||||    |||||
seq2  AACTTTGCAGTAATAAAAG-AACT-AAGACT-AGGCACACT---CATCAG  1084

seq1  TGAATTGATAAT-GGTCTGTTCTACTAAAGGATGT--GAGGTCAGTAAAT  1147
      ||| | ||| || |||||||||||||  |||||||  ||||| |||||| 
seq2  TGATTGGATTATGGGTCTGTTCTACT--AGGATGTGGGAGGT-AGTAAA-  1130

seq1  TCAGG  1152
      |||||
seq2  TCAGG  1135