BAC Information

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BAC

Clone NameB6Ng01-052D06
Chromosome1 (Build37)
Map Location 142,225,069 - 142,362,070
singlet/doubletdoublet
Overlap geneKcnt2
Upstream geneCrb1, Zbtb41, Aspm, F13b, Cfhr1, EG624286, EG214403, BC026782, LOC545399, EG545367, Cfh
Downstream geneEG226472
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052D06.bB6Ng01-052D06.g
ACCDH875627DH875628
length1,1771,162
definitionDH875627|Mus musculus domesticus DNA, BAC clone: B6Ng01-052D06, 5' end.DH875628|Mus musculus domesticus DNA, BAC clone: B6Ng01-052D06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,225,069 - 142,226,264)(142,360,888 - 142,362,070)
sequence
gaattctttttttgtgtgttgactaactacatatctgctgtttcaggctt
tgtacaatagagggctttgtaagttcctcctccgacccacccacccaccc
ttcaagctacttggaaatttcatttagagcacttattactctgtgtaatt
atataattattgctgtcgattattttctgtttctgacaatattataaact
gtatgaaggacaaaatatatgatgatcacagtataaataaaaatgctgaa
taaaaggaactgatctggaaaaatttccaagtgggttgatataaataatt
tcaaggtatttgatgagggaagagggaaaagtagttacattttgtcaaac
actaaacacaaaaacaggtaaaaataaacatttctaaataaagtttaatc
cataagcatgctattggttactatgagttttctgtgtgttactattggtt
agtatgagtcacattttttttacatttttgagacatataaatatccccta
aaatggagatgatgaactcttcttatacagaggacagctcttgtagttat
gcatagttatgagaagatttacaattgtgccttactggagagctgcagca
tattggtaaaacgacttcagtcattctgtgtgtgttacaaaatgctctgg
tgttttagtatacataggtaggtgcaaagtaatacatacactggactggg
atggccttaataaacatcttagctaataacttgaaaatatattaatgaat
atatatatatatgtatatgttcgtgttagtagtatatagctggtacctag
tatcttgttgaggtttagactaggacattggatactttagaacctgagtg
agcacccattgtgggtataaactgaacacaggtcttctgcaagagcggcc
agtgttcttttgatgaaaatctttccaaaccttgacaaagtcacattcat
tccctatgtaattgtattattctatctagaaacagtactttcacctgtaa
atagaaaggtgtggatgctattttgaatattagttttgagttaagttttc
atttcttttggaaaaagtaattacttagaagaccgtgttgcaaaaatatc
caataacttggatctgatacttggccaactcgactaatcttgggactgga
tatacaaaaagatgggtttggttatct
gaattcattgtcttacaagacctcaaaaagaattgggaattcaagcaaaa
atatcagctttcaaatatcagcaatttataaagtataaatatattgaatt
taattgattaaaaaatgattatacaatcactacagtgattacatgattgc
aattatattctttacattatttttcgttagaccaagaggcaaacaatata
aaagaattagaatgtatataagcataaatttctaatttgaggacagtcaa
atgaaattgtatattaaaatctatgtaaacatatcattcataataaaata
gaatttctgtacattcgccccttggttaaatgaaaacatatatggattga
tatagataatatagattatttaggtgatataaacagatgaatatttgata
aaaaatagagatgatagagagatagaacgatagattatagatgcatagat
atatagaaaagtagatctacagatagatgatacacagattctactagcct
tggtggtatttttagaatagttacagattcatagatttccttattttcca
tttctaatctgaatcatacttggaatttccaaggaggaaggtgctattgg
cagacgtattgggttcatttcttattacttatgtcactgaacagcttgga
aaattaaatgagaacttggcatcactaaagcacatatagtaatttatcaa
ctaggatgtattacttaaaacatacatctattaacaatgatatcttattt
aaaatcaacacattcttatgcatgtttataactctaatatctacttctaa
gtgacagaatgtttcatatttaaatttaccaattctattattttattatg
tcacaaaaccttaatcatcttgagagctaattaaaaatacaaaatctatg
aataaactaaaggcacccattatcaacatcccatcttctagcagcacttc
taataaaacacatatataaattattacaaatgtcaccttgtccttatttt
aaaatccatatctggttcttctgtatattttttgttgatgtgatttggca
aatgcatacaggtagtgatcaatactaaattccactagaaatcaatttcc
taaacctttttccgcatgattttgattctgttcctttcaatcatcacaaa
gagataaaggat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_142225069_142226264
seq2: B6Ng01-052D06.b_45_1221

seq1  GAATTCTTTTTTTGTGTGTTGACTAACTACATATCTGCTGTTTCAGGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTTGTGTGTTGACTAACTACATATCTGCTGTTTCAGGCTT  50

seq1  TGTACAATAGAGGGCTTTGTAAGTTCCTCCTCCGACCCACCCACCCACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAATAGAGGGCTTTGTAAGTTCCTCCTCCGACCCACCCACCCACCC  100

seq1  TTCAAGCTACTTGGAAATTTCATTTAGAGCACTTATTACTCTGTGTAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCTACTTGGAAATTTCATTTAGAGCACTTATTACTCTGTGTAATT  150

seq1  ATATAATTATTGCTGTCGATTATTTTCTGTTTCTGACAATATTATAAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTATTGCTGTCGATTATTTTCTGTTTCTGACAATATTATAAACT  200

seq1  GTATGAAGGACAAAATATATGATGATCACAGTATAAATAAAAATGCTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGAAGGACAAAATATATGATGATCACAGTATAAATAAAAATGCTGAA  250

seq1  TAAAAGGAACTGATCTGGAAAAATTTCCAAGTGGGTTGATATAAATAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGAACTGATCTGGAAAAATTTCCAAGTGGGTTGATATAAATAATT  300

seq1  TCAAGGTATTTGATGAGGGAAGAGGGAAAAGTAGTTACATTTTGTCAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTATTTGATGAGGGAAGAGGGAAAAGTAGTTACATTTTGTCAAAC  350

seq1  ACTAAACACAAAAACAGGTAAAAATAAACATTTCTAAATAAAGTTTAATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACACAAAAACAGGTAAAAATAAACATTTCTAAATAAAGTTTAATC  400

seq1  CATAAGCATGCTATTGGTTACTATGAGTTTTCTGTGTGTTACTATTGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCATGCTATTGGTTACTATGAGTTTTCTGTGTGTTACTATTGGTT  450

seq1  AGTATGAGTCACATTTTTTTTACATTTTTGAGACATATAAATATCCCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGAGTCACATTTTTTTTACATTTTTGAGACATATAAATATCCCCTA  500

seq1  AAATGGAGATGATGAACTCTTCTTATACAGAGGACAGCTCTTGTAGTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAGATGATGAACTCTTCTTATACAGAGGACAGCTCTTGTAGTTAT  550

seq1  GCATAGTTATGAGAAGATTTACAATTGTGCCTTACTGGAGAGCTGCAGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGTTATGAGAAGATTTACAATTGTGCCTTACTGGAGAGCTGCAGCA  600

seq1  TATTGGTAAAACGACTTCAGTCATTCTGTGTGTGTTACAAAATGCTCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGTAAAACGACTTCAGTCATTCTGTGTGTGTTACAAAATGCTCTGG  650

seq1  TGTTTTAGTATACATAGGTAGGTGCAAAGTAATACATACACTGGACTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAGTATACATAGGTAGGTGCAAAGTAATACATACACTGGACTGGG  700

seq1  ATGGCCTTAATAAACATCTTAGCTAATAACTTGAAAATATATTAATGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTTAATAAACATCTTAGCTAATAACTTGAAAATATATTAATGAAT  750

seq1  ATATATATATATGTATATGTTCGTGTTAGTAGTATATAGCTGGTACCTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATGTATATGTTCGTGTTAGTAGTATATAGCTGGTACCTAG  800

seq1  TATC-TGTTGAGG-TTAGACTAGGACATTGGATACTTTAGAACCTGAGTG  848
      |||| |||||||| ||||||||||||||||||||||||||||||||||||
seq2  TATCTTGTTGAGGTTTAGACTAGGACATTGGATACTTTAGAACCTGAGTG  850

seq1  AGCAACCA-TGTGGGTATAAACTGAACACAGGTCCTCTGCAAGAGCGGCC  897
      |||| ||| ||||||||||||||||||||||||| |||||||||||||||
seq2  AGCACCCATTGTGGGTATAAACTGAACACAGGTCTTCTGCAAGAGCGGCC  900

seq1  AGTGTTCTTTTGATGAAAAATCTTTCCAAACCTTGACAAAGTCACATTCA  947
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGTGTTCTTTTGATG-AAAATCTTTCCAAACCTTGACAAAGTCACATTCA  949

seq1  TTCCCTATGTTATTTGTATTATTCTTATCCTAGGAAAACAGTAACTTTCA  997
      ||||||||| || ||||||||||| ||| ||||  ||||||| |||||||
seq2  TTCCCTATG-TAATTGTATTATTC-TAT-CTAG--AAACAGT-ACTTTCA  993

seq1  CCTGTAAAATAGAAAGGTGTGGATGCTATTTTGAATATTAGTTTTGAGTT  1047
      ||||| |||||||||||||||||||||||||||||||||||||||||| |
seq2  CCTGT-AAATAGAAAGGTGTGGATGCTATTTTGAATATTAGTTTTGAG-T  1041

seq1  TAAGTTTTCATTTTCTTCTGGAAGAGGTAAATTTACATAAGAAGAAGCAG  1097
      |||||||||| |||||| ||||| | ||||  |||| | ||||||  | |
seq2  TAAGTTTTCA-TTTCTTTTGGAAAAAGTAA--TTAC-TTAGAAGA--CCG  1085

seq1  TGTTGCAAAAAATATGCAGATAACATGTGATCTGAACTCTTGGCAGATCT  1147
      |||||| |||||||| || ||||| || |||||| |  ||||||  | ||
seq2  TGTTGC-AAAAATATCCA-ATAACTTG-GATCTG-ATACTTGGC-CAACT  1130

seq1  GAACTTATTGTGGTGCATGACATAAAAAAAAAGATGGTTTTGTTTATCT  1196
        ||| ||  |||  |  |  ||| | |||||||||| |||| ||||||
seq2  CGACTAATCTTGGGACTGG--ATATACAAAAAGATGGGTTTGGTTATCT  1177

seq1: chr1_142360888_142362070
seq2: B6Ng01-052D06.g_69_1230 (reverse)

seq1  ATCCTTTATACTCTTTGTGGAAATGAATATGAAAAGAAACAGAATTCAAA  50
      ||||||||| |||||||||   |||   ||  |||| ||||||| |||||
seq2  ATCCTTTAT-CTCTTTGTG---ATG---ATTGAAAGGAACAGAA-TCAAA  42

seq1  ATCATGCGGAGATAGGTATAGGAAATATGATATCTAGTGGAATTTAGTAT  100
      |||||||||| | |||| |||||||| |||| ||||||||||||||||||
seq2  ATCATGCGGAAAAAGGTTTAGGAAAT-TGATTTCTAGTGGAATTTAGTAT  91

seq1  TGATCAACTAACTGTATGCATTTGCCAAAATCACATCAGACATAAAATAT  150
      ||||| |||| ||||||||||||||| ||||||||||| ||| |||||| 
seq2  TGATC-ACTACCTGTATGCATTTGCC-AAATCACATCA-ACAAAAAATA-  137

seq1  TACAGAAGAAACAAGATATGGAATTTTAAAAATAAGGAACAAGGTGACAA  200
      |||||||| ||| |||||||||  ||| ||||||||| ||||||||||| 
seq2  TACAGAAG-AACCAGATATGGA--TTTTAAAATAAGG-ACAAGGTGACA-  182

seq1  TTTTGTTAATAATTTATATATGTTGTTTTATTAGAAGTGCTGCTAGAAGA  250
       |||| |||||||||||||||| |||||||||||||||||||||||||||
seq2  -TTTG-TAATAATTTATATATG-TGTTTTATTAGAAGTGCTGCTAGAAGA  229

seq1  TGGGATGTTGATAATGGGTGCCTTTAGTTTATTCATAGATTTTGTATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGTTGATAATGGGTGCCTTTAGTTTATTCATAGATTTTGTATTTT  279

seq1  TAATTAGCTCTCAAGATGATTAAGGTTTTGTGACATAATAAAATAATAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGCTCTCAAGATGATTAAGGTTTTGTGACATAATAAAATAATAGA  329

seq1  ATTGGTAAATTTAAATATGAAACATTCTGTCACTTAGAAGTAGATATTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTAAATTTAAATATGAAACATTCTGTCACTTAGAAGTAGATATTAG  379

seq1  AGTTATAAACATGCATAAGAATGTGTTGATTTTAAATAAGATATCATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATAAACATGCATAAGAATGTGTTGATTTTAAATAAGATATCATTGT  429

seq1  TAATAGATGTATGTTTTAAGTAATACATCCTAGTTGATAAATTACTATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGATGTATGTTTTAAGTAATACATCCTAGTTGATAAATTACTATAT  479

seq1  GTGCTTTAGTGATGCCAAGTTCTCATTTAATTTTCCAAGCTGTTCAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTAGTGATGCCAAGTTCTCATTTAATTTTCCAAGCTGTTCAGTGA  529

seq1  CATAAGTAATAAGAAATGAACCCAATACGTCTGCCAATAGCACCTTCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGTAATAAGAAATGAACCCAATACGTCTGCCAATAGCACCTTCCTC  579

seq1  CTTGGAAATTCCAAGTATGATTCAGATTAGAAATGGAAAATAAGGAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAATTCCAAGTATGATTCAGATTAGAAATGGAAAATAAGGAAATC  629

seq1  TATGAATCTGTAACTATTCTAAAAATACCACCAAGGCTAGTAGAATCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATCTGTAACTATTCTAAAAATACCACCAAGGCTAGTAGAATCTGT  679

seq1  GTATCATCTATCTGTAGATCTACTTTTCTATATATCTATGCATCTATAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCATCTATCTGTAGATCTACTTTTCTATATATCTATGCATCTATAAT  729

seq1  CTATCGTTCTATCTCTCTATCATCTCTATTTTTTATCAAATATTCATCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCGTTCTATCTCTCTATCATCTCTATTTTTTATCAAATATTCATCTG  779

seq1  TTTATATCACCTAAATAATCTATATTATCTATATCAATCCATATATGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATCACCTAAATAATCTATATTATCTATATCAATCCATATATGTTT  829

seq1  TCATTTAACCAAGGGGCGAATGTACAGAAATTCTATTTTATTATGAATGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAACCAAGGGGCGAATGTACAGAAATTCTATTTTATTATGAATGA  879

seq1  TATGTTTACATAGATTTTAATATACAATTTCATTTGACTGTCCTCAAATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTACATAGATTTTAATATACAATTTCATTTGACTGTCCTCAAATT  929

seq1  AGAAATTTATGCTTATATACATTCTAATTCTTTTATATTGTTTGCCTCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTATGCTTATATACATTCTAATTCTTTTATATTGTTTGCCTCTT  979

seq1  GGTCTAACGAAAAATAATGTAAAGAATATAATTGCAATCATGTAATCACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAACGAAAAATAATGTAAAGAATATAATTGCAATCATGTAATCACT  1029

seq1  GTAGTGATTGTATAATCATTTTTTAATCAATTAAATTCAATATATTTATA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGATTGTATAATCATTTTTTAATCAATTAAATTCAATATATTTATA  1079

seq1  CTTTATAAATTGCTGATATTTGAAAGCTGATATTTTTGCTTGAATTCCCA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATAAATTGCTGATATTTGAAAGCTGATATTTTTGCTTGAATTCCCA  1129

seq1  ATTCTTTTTGAGGTCTTGTAAGACAATGAATTC  1183
      |||||||||||||||||||||||||||||||||
seq2  ATTCTTTTTGAGGTCTTGTAAGACAATGAATTC  1162