BAC Information

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BAC

Clone NameB6Ng01-052E19
Chromosome1 (Build37)
Map Location 14,904,761 - 15,061,450
singlet/doubletdoublet
Overlap geneTrpa1, EG269105
Upstream geneLOC100039869, Eya1, LOC665391, Msc, Smt3h2-ps4, EG665407
Downstream geneLOC100039949, LOC100039959, Kcnb2, Ppia-ps1_109.1, Terf1, Gm106, LOC665434, 4930444P10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052E19.bB6Ng01-052E19.g
ACCDH875693DH875694
length1,088210
definitionDH875693|Mus musculus domesticus DNA, BAC clone: B6Ng01-052E19, 5' end.DH875694|Mus musculus domesticus DNA, BAC clone: B6Ng01-052E19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,060,326 - 15,061,450)(14,904,761 - 14,904,970)
sequence
gaattcaaataagctgggtgtgtatatcattcacttcttttagctttgaa
ataaatattgttcagcttagcagacatacttataatgatatttacagagt
atattgtatttgcttgagacaaataggcatggtggattttgtattcataa
atgcctccaagctcactactgaatctattgattcatctgacaaataactt
gattctctactgtgtgacaggaaggatctaaggaacttgagctatgccag
ttaacatgagtcagacgaatttcacctcataactaggaaagaaagtcaac
acacacaaaaacacaacaaagcagaaaattacattacatttttgaaggga
gtaaatgtgtaaaaacgacagtataggatctagagggatggctcggcact
tcagagcactggttgatcctccagagggctgaggtttgaatcccagctcc
cacacctatgatactagttaagaaatttgacagtttcttgtgatctcctc
agacactgtagagaaatagacacaggtaaaacatcataaaataaattaat
atttatattaatatttatatttttaaaagaaatagacacaggtaaaacat
agaacaaattaatatttatatttttaaaaagaatctaaatacagtgtaag
taataaggagagtgtagggctgtattgcatctcaggtaagtgttaagtga
gcaagcattctttgtaaaggtaacatataaataaaaacttgaaaggaaac
aaagctgctgaatatggtagtgtctgtgctgtgcatgactcagacagagg
ttaaagctctgagcaagagggcacctggcaatgccaagcaaagtcacaag
tcatgatcatggcagagaagcctgtgtgccccagaagatatgaactatac
ccagcaaagaaagttgaagcatggtatgctctgctctgacagtttcataa
agtgctcctttgaagactatgtgcgaatagctagtctatggtaactgaag
accaggttagtagcacttatcctcatcattttgtcatgacacagctagag
cattgagaaaagaaccttgtgaaattctccagactgtg
acagaactccactgcagttcttgggtagcctcaagattcaaattatttag
catgtaaccttccagatttacaaacacacaaccaattaatgtattttcaa
tcctacttagaagggggaacaaaataatcacaggagttagagggaggggg
gagaaagaaaggagagggaaggaaaaatgggacaggatcaggtgtgggag
gagactggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_15060326_15061450
seq2: B6Ng01-052E19.b_42_1129 (reverse)

seq1  CACAGTCTTGTGGAAGAATTTCTCAACCAAAGTTTCCTTTTCTCAAATGG  50
      ||||||||    | |||||||| |     ||| || ||||||||||   |
seq2  CACAGTCT----GGAGAATTTCAC-----AAGGTT-CTTTTCTCAA--TG  38

seq1  CTCTAGCTTGTGTCACATTGACAAAAATTTGATGAGGATAAGTGCCTAAC  100
      ||||||| |||||||   ||||||||   ||||||||||||||||   ||
seq2  CTCTAGC-TGTGTCA---TGACAAAA---TGATGAGGATAAGTGC--TAC  79

seq1  TAAAACCCTTGTGTCTTCAGTTTACCCTGGGCTAGCCTATTCGCAACATA  150
      |||   |||   |||||||| ||||| | | |||| |||||||| |||||
seq2  TAA---CCT--GGTCTTCAG-TTACCATAGACTAG-CTATTCGC-ACATA  121

seq1  GTCTTCAAAGGGAGCACTTTATAGAAACTGTCAGAGCAGAGCATACCCAT  200
      ||||||||| |||||||||||| |||||||||||||||||||||| ||||
seq2  GTCTTCAAA-GGAGCACTTTAT-GAAACTGTCAGAGCAGAGCATA-CCAT  168

seq1  GCTTCAAACTTTCTTTGCTGGGTATAGTTCATATCTTTCTGGGGCACACA  250
      ||||| ||||||||||||||||||||||||||||| ||||||||||||||
seq2  GCTTC-AACTTTCTTTGCTGGGTATAGTTCATATC-TTCTGGGGCACACA  216

seq1  GGCCTTCTCTGCCATGATTCATGACCTGGTGACTTTGCTTGGCATTGCCA  300
      || |||||||||||||| |||||| || ||||||||||||||||||||||
seq2  GG-CTTCTCTGCCATGA-TCATGA-CTTGTGACTTTGCTTGGCATTGCCA  263

seq1  GGTGCCCTCTTGCCTCAGAGCTTTAACCTCTGTCTGAGTCATGCACAGCA  350
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGTGCCCTCTTG-CTCAGAGCTTTAACCTCTGTCTGAGTCATGCACAGCA  312

seq1  CAGACACTACCATATTCAGCAGCTTTGTTTCC-TTCAAGTTTTTATTTAT  399
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAGACACTACCATATTCAGCAGCTTTGTTTCCTTTCAAGTTTTTATTTAT  362

seq1  ATGTTACCTTTACAAAGAATGCTTGCTCACTTAACACTTACCTGAGATGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACCTTTACAAAGAATGCTTGCTCACTTAACACTTACCTGAGATGC  412

seq1  AATACAGCCCTACACTCTCCTTATTACTTACACTGTATTTAGATTCTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGCCCTACACTCTCCTTATTACTTACACTGTATTTAGATTCTTTT  462

seq1  TAAAAATATAAATATTAATTTGTTCTATGTTTTACCTGTGTCTATTTCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATATAAATATTAATTTGTTCTATGTTTTACCTGTGTCTATTTCTT  512

seq1  TTAAAAATATAAATATTAATATAAATATTAATTTATTTTATGATGTTTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATATAAATATTAATATAAATATTAATTTATTTTATGATGTTTTA  562

seq1  CCTGTGTCTATTTCTCTACAGTGTCTGAGGAGATCACAAGAAACTGTCAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTCTATTTCTCTACAGTGTCTGAGGAGATCACAAGAAACTGTCAA  612

seq1  ATTTCTTAACTAGTATCATAGGTGTGGGAGCTGGGATTCAAACCTCAGCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTAACTAGTATCATAGGTGTGGGAGCTGGGATTCAAACCTCAGCC  662

seq1  CTCTGGAGGATCAACCAGTGCTCTGAAGTGCCGAGCCATCCCTCTAGATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGAGGATCAACCAGTGCTCTGAAGTGCCGAGCCATCCCTCTAGATC  712

seq1  CTATACTGTCGTTTTTACACATTTACTCCCTTCAAAAATGTAATGTAATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACTGTCGTTTTTACACATTTACTCCCTTCAAAAATGTAATGTAATT  762

seq1  TTCTGCTTTGTTGTGTTTTTGTGTGTGTTGACTTTCTTTCCTAGTTATGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTTTGTTGTGTTTTTGTGTGTGTTGACTTTCTTTCCTAGTTATGA  812

seq1  GGTGAAATTCGTCTGACTCATGTTAACTGGCATAGCTCAAGTTCCTTAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAATTCGTCTGACTCATGTTAACTGGCATAGCTCAAGTTCCTTAGA  862

seq1  TCCTTCCTGTCACACAGTAGAGAATCAAGTTATTTGTCAGATGAATCAAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTGTCACACAGTAGAGAATCAAGTTATTTGTCAGATGAATCAAT  912

seq1  AGATTCAGTAGTGAGCTTGGAGGCATTTATGAATACAAAATCCACCATGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAGTAGTGAGCTTGGAGGCATTTATGAATACAAAATCCACCATGC  962

seq1  CTATTTGTCTCAAGCAAATACAATATACTCTGTAAATATCATTATAAGTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTGTCTCAAGCAAATACAATATACTCTGTAAATATCATTATAAGTA  1012

seq1  TGTCTGCTAAGCTGAACAATATTTATTTCAAAGCTAAAAGAAGTGAATGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTAAGCTGAACAATATTTATTTCAAAGCTAAAAGAAGTGAATGA  1062

seq1  TATACACACCCAGCTTATTTGAATTC  1125
      ||||||||||||||||||||||||||
seq2  TATACACACCCAGCTTATTTGAATTC  1088

seq1: chr1_14904761_14904970
seq2: B6Ng01-052E19.g_72_281

seq1  ACAGAACTCCACTGCAGTTCTTGGGTAGCCTCAAGATTCAAATTATTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACTCCACTGCAGTTCTTGGGTAGCCTCAAGATTCAAATTATTTAG  50

seq1  CATGTAACCTTCCAGATTTACAAACACACAACCAATTAATGTATTTTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAACCTTCCAGATTTACAAACACACAACCAATTAATGTATTTTCAA  100

seq1  TCCTACTTAGAAGGGGGAACAAAATAATCACAGGAGTTAGAGGGAGGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTTAGAAGGGGGAACAAAATAATCACAGGAGTTAGAGGGAGGGGG  150

seq1  GAGAAAGAAAGGAGAGGGAAGGAAAAATGGGACAGGATCAGGTGTGGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAAAGGAGAGGGAAGGAAAAATGGGACAGGATCAGGTGTGGGAG  200

seq1  GAGACTGGGA  210
      ||||||||||
seq2  GAGACTGGGA  210