BAC Information

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BAC

Clone NameB6Ng01-052G21
Chromosome1 (Build37)
Map Location 100,247,510 - 100,403,875
singlet/doubletdoublet
Overlap geneSlco6d1, LOC100041868
Upstream geneEG634346, D1Ertd622e, Hisppd1, Zh2c2, Pam, LOC100041823, LOC666153, LOC100040887
Downstream geneEG666182
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052G21.bB6Ng01-052G21.g
ACCDH875789DH875790
length1,010885
definitionDH875789|Mus musculus domesticus DNA, BAC clone: B6Ng01-052G21, 5' end.DH875790|Mus musculus domesticus DNA, BAC clone: B6Ng01-052G21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,402,863 - 100,403,875)(100,247,510 - 100,248,394)
sequence
gaattcataaactatattcatttgcaagtacataaattatatttttaaaa
cttaagtatcattaaaaacataaacttgctttaagtttatgccttaactg
tttgaaatattgttttatatgccttaactgtttgaaatattgattacttt
ctgtacataaatactaagaattgttttatagatttaatttttgtctcaaa
tttcttaaattaaaatattacaaaaaatattaaacttcacaactgaaata
tcctgttagagtacaaatgttgtagcaaatcaatactagttatataatcc
agccaatttaaacaataagaaacaccaataagtcttttccatatatggac
tatggcatctgttttaagggatatcgtctcaaaggcatagttacctgtga
tagaaaagtaatattaccatgaaaattataagtaatgaatgactgtaatg
aacatttgaaagcacaaagtttgagaaaagaatgagaaattattaaaaat
aaacctggcagctcttcacagaagagtgacgagctagtaaaaaatgtatc
tgaccacagtggaaaaaaatctagacaataaaccatatgttccgatgttt
aataattaaagaaataaggaattaacatccaaaggaatggagaacttcat
gaccgtgtcatgaagtacatattccacagcagatgggagcatgaaatgga
aaaccacattttcaccctagaaggacctgtgagagaatggagtattctgt
tgtagtcttacaaggactgacctggaatgattgcacagaacaaagcctgc
caaaataccaagaggtgttgcttaatattgagagggcaatattcaaacat
caaagaataatgataggcagtggacagtactgactggttttatccagaat
tttatactagtaaagatttggaagtttatagcctggtcagaaaagaagaa
aactactttgtttggaagaacaattctgtgtgtggcccagtaagcacttg
ttaatgaaat
gaattcatttgtgtttgaagggcagaaacctagactttgtgcttcttttc
cttgcattttctatgcaggagactttgaatttaacagggctgaaactaga
aaccagtatcagcagaaacctgtattacttctctgtatatccttcccctc
ctatctagcttttctattttataaagactaaggtacattttaagagaggt
tatcaaatgtgaagtgtttccaggcaacagacctagtccctgttattttt
ttattttagtgatttttatcattctcaagggaaacaatatacatctggct
aaaagacaatgtttaataaattttgaattacatcaaaatgaagaattctt
tttttccttatagccctcgtaagaagaggttttaaccaaaatggaattcc
taaagagctaatcagctgcaatacctcctagctaaaatattttaatagtt
tcataattaagaatttctttacaggtctattcctggatcatctttactca
cattctcagtaatttctctgcacgaatgcacatttgcatatcaaaagaca
gcaacatcctcacacactcacacccacatatcccccacacccacattcac
acaaattctctctcacatgtactcactcactcacacacacactcacacac
acacgcacacacacacagagagagagagagagagagagagagagagagaa
gagagagagacatagtactcatcacacaagactatgaatactatgtgaca
tcccacagaccaacacattatgcagcctttagtgagtaatagttgacccc
ctctaattattggttgctcccatgggaggcttcgatgcccagtgtaagaa
aatgctagggtgtgagttggaggtgagtgggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_100402863_100403875
seq2: B6Ng01-052G21.b_42_1051 (reverse)

seq1  ATTTCATTAACAAGTGCTTACTGGGCCACACACAGAATTTGTTCTTCCAA  50
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATTTCATTAACAAGTGCTTACTGGGCCACACACAGAA-TTGTTCTTCCAA  49

seq1  ACAAAAGTAGTTTTCTTCTTTTCTGACCAGGCTATAAAACTTCCAAATCT  100
      || |||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AC-AAAGTAGTTTTCTTCTTTTCTGACCAGGCTAT-AAACTTCCAAATCT  97

seq1  TTACTAGTATAAAATTCTGGATAAAACCAGTCAGTACTGTCCACTGCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAGTATAAAATTCTGGATAAAACCAGTCAGTACTGTCCACTGCCTA  147

seq1  TCATTATTCTTTGATTGTTTGAATATTGCCCTCTCAATATTAAGC-ACAC  199
      |||||||||||||| |||||||||||||||||||||||||||||| ||||
seq2  TCATTATTCTTTGA-TGTTTGAATATTGCCCTCTCAATATTAAGCAACAC  196

seq1  CTCTTGGTATTTTGGCAGGCTTTGTTCTGTGCAATCATTCCAGGTCAGTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGTATTTTGGCAGGCTTTGTTCTGTGCAATCATTCCAGGTCAGTC  246

seq1  CTTGTAAGACTACAACAGAATACTCCATTCTCTCACAGGTCCTTCTAGGG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAAGACTACAACAGAATACTCCATTCTCTCACAGGTCCTTCTAGGG  296

seq1  TGAAAATGTGGTTTTCCATTTCATGCTCCCATCTGCTGTGGAATATGTAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATGTGGTTTTCCATTTCATGCTCCCATCTGCTGTGGAATATGTAC  346

seq1  TTCATGACACGGTCATGAAGTTCTCCATTCCTTTGGATGTTAATTCCTTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGACACGGTCATGAAGTTCTCCATTCCTTTGGATGTTAATTCCTTA  396

seq1  TTTCTTTAATTATTAAACATCGGAACATATGGTTTATTGTCTAGATTTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTAATTATTAAACATCGGAACATATGGTTTATTGTCTAGATTTTT  446

seq1  TTCCACTGTGGTCAGATACATTTTTTACTAGCTCGTCACTCTTCTGTGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTGTGGTCAGATACATTTTTTACTAGCTCGTCACTCTTCTGTGAA  496

seq1  GAGCTGCCAGGTTTATTTTTAATAATTTCTCATTCTTTTCTCAAACTTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGCCAGGTTTATTTTTAATAATTTCTCATTCTTTTCTCAAACTTTG  546

seq1  TGCTTTCAAATGTTCATTACAGTCATTCATTACTTATAATTTTCATGGTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCAAATGTTCATTACAGTCATTCATTACTTATAATTTTCATGGTA  596

seq1  ATATTACTTTTCTATCACAGGTAACTATGCCTTTGAGACGATATCCCTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTACTTTTCTATCACAGGTAACTATGCCTTTGAGACGATATCCCTTA  646

seq1  AAACAGATGCCATAGTCCATATATGGAAAAGACTTATTGGTGTTTCTTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGATGCCATAGTCCATATATGGAAAAGACTTATTGGTGTTTCTTAT  696

seq1  TGTTTAAATTGGCTGGATTATATAACTAGTATTGATTTGCTACAACATTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAATTGGCTGGATTATATAACTAGTATTGATTTGCTACAACATTT  746

seq1  GTACTCTAACAGGATATTTCAGTTGTGAAGTTTAATATTTTTTGTAATAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCTAACAGGATATTTCAGTTGTGAAGTTTAATATTTTTTGTAATAT  796

seq1  TTTAATTTAAGAAATTTGAGACAAAAATTAAATCTATAAAACAATTCTTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTAAGAAATTTGAGACAAAAATTAAATCTATAAAACAATTCTTA  846

seq1  GTATTTATGTACAGAAAGTAATCAATATTTCAAACAGTTAAGGCATATAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTATGTACAGAAAGTAATCAATATTTCAAACAGTTAAGGCATATAA  896

seq1  AACAATATTTCAAACAGTTAAGGCATAAACTTAAAGCAAGTTTATGTTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATTTCAAACAGTTAAGGCATAAACTTAAAGCAAGTTTATGTTTT  946

seq1  TAATGATACTTAAGTTTTAAAAATATAATTTATGTACTTGCAAATGAATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGATACTTAAGTTTTAAAAATATAATTTATGTACTTGCAAATGAATA  996

seq1  TAGTTTATGAATTC  1013
      ||||||||||||||
seq2  TAGTTTATGAATTC  1010

seq1: chr1_100247510_100248394
seq2: B6Ng01-052G21.g_68_952

seq1  GAATTCATTTGTGTTTGAAGGGCAGAAACCTAGACTTTGTGCTTCTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGTGTTTGAAGGGCAGAAACCTAGACTTTGTGCTTCTTTTC  50

seq1  CTTGCATTTTCTATGCAGGAGACTTTGAATTTAACAGGGCTGAAACTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATTTTCTATGCAGGAGACTTTGAATTTAACAGGGCTGAAACTAGA  100

seq1  AACCAGTATCAGCAGAAACCTGTATTACTTCTCTGTATATCCTTCCCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTATCAGCAGAAACCTGTATTACTTCTCTGTATATCCTTCCCCTC  150

seq1  CTATCTAGCTTTTCTATTTTATAAAGACTAAGGTACATTTTAAGAGAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTAGCTTTTCTATTTTATAAAGACTAAGGTACATTTTAAGAGAGGT  200

seq1  TATCAAATGTGAAGTGTTTCCAGGCAACAGACCTAGTCCCTGTTATTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAATGTGAAGTGTTTCCAGGCAACAGACCTAGTCCCTGTTATTTTT  250

seq1  TTATTTTAGTGATTTTTATCATTCTCAAGGGAAACAATATACATCTGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTAGTGATTTTTATCATTCTCAAGGGAAACAATATACATCTGGCT  300

seq1  AAAAGACAATGTTTAATAAATTTTGAATTACATCAAAATGAAGAATTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACAATGTTTAATAAATTTTGAATTACATCAAAATGAAGAATTCTT  350

seq1  TTTTTCCTTATAGCCCTCGTAAGAAGAGGTTTTAACCAAAATGGAATTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTTATAGCCCTCGTAAGAAGAGGTTTTAACCAAAATGGAATTCC  400

seq1  TAAAGAGCTAATCAGCTGCAATACCTCCTAGCTAAAATATTTTAATAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGCTAATCAGCTGCAATACCTCCTAGCTAAAATATTTTAATAGTT  450

seq1  TCATAATTAAGAATTTCTTTACAGGTCTATTCCTGGATCATCTTTACTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAATTAAGAATTTCTTTACAGGTCTATTCCTGGATCATCTTTACTCA  500

seq1  CATTCTCAGTAATTTCTCTGCACGAATGCACATTTGCATATCAAAAGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCAGTAATTTCTCTGCACGAATGCACATTTGCATATCAAAAGACA  550

seq1  GCAACATCCTCACACACTCACACCCACATATCCCCCACACCCACATTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATCCTCACACACTCACACCCACATATCCCCCACACCCACATTCAC  600

seq1  ACAAATTCTCTCTCACATGTACTCACTCACTCACACACACACTCACACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTCTCTCTCACATGTACTCACTCACTCACACACACACTCACACAC  650

seq1  ACACGCACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAA  700
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ACACGCACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG-A  699

seq1  AGAGAGAGAGACATAGTACTCATCACACAAGACTATGAATACTATGTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGACATAGTACTCATCACACAAGACTATGAATACTATGTGAC  749

seq1  ATCCCACAGACCAACACATTATGCAGCCTTTAGTGAGTAATAGTTGACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCACAGACCAACACATTATGCAGCCTTTAGTGAGTAATAGTTGACCC  799

seq1  CCTCTAATTATTGGTTGCTCCCAT-GGAGGC-TCGATGCCCAGTGTAGGA  848
      |||||||||||||||||||||||| |||||| ||||||||||||||| ||
seq2  CCTCTAATTATTGGTTGCTCCCATGGGAGGCTTCGATGCCCAGTGTAAGA  849

seq1  GAATGCTAGGGTGGTGAGTTGGAGGTGAGTGGGTGGG  885
       ||||||||||| ||||||||||||||||||||||||
seq2  AAATGCTAGGGT-GTGAGTTGGAGGTGAGTGGGTGGG  885