BAC Information

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BAC

Clone NameB6Ng01-052I17
Chromosome3 (Build37)1 (Build37)
Map Location 150,038,671 - 150,038,77396,738,489 - 96,739,584
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040620, LOC100040633
Downstream geneLOC100040455, LOC100040463, LOC623554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052I17.bB6Ng01-052I17.g
ACCDH875867DH875868
length7611,095
definitionDH875867|Mus musculus domesticus DNA, BAC clone: B6Ng01-052I17, 5' end.DH875868|Mus musculus domesticus DNA, BAC clone: B6Ng01-052I17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(150,038,671 - 150,038,773)(96,738,489 - 96,739,584)
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaagtgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggagaatccagcaatacctctcctgggc
atatatccagaagatgctccaactggtaagaaggatacataatccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctgcacaatg
gagtactactcagctattaaaaagaatgaatttatgaaatcctagccaag
tggatggacctggagggcatcatcctgagtgaggtaacacattcacaaag
gaactcacacaatatgtactcactgataagtggatattagcccaaaactt
aggatacccaagatataagatacaatttgctaaacacatgaaactcaaga
agaatgaaatacctcactggaaagagaggcccattggacatgcaaattgt
atatgccccagtacaggggaatgccaatgccaaaaaaaaaaaaaaaatgg
gaatgagtggg
gaattcaaatagagaaaacgatagcaatgattcaatacattatgactatt
gaagtaagcgactgtggtgctttgaatgagagtggcccctataggcttct
gtatttggtcattggttggcagcactctttgaaaaggattaagaggttca
gtcttgttaaaggaggtatatcctgtttgcagtctttacagtttcataat
gtgtgccttctcagcttgctctctctcatggtctctgtctcaagatgtaa
gctctcagctactgccccagtgccatgccagtcttcctgataccatgaga
gttattgactttaactctctgaaactataagctttaaacaaaatcttttt
tttccctatattttctcttggtcatgttgtcttatcacagcagtataaaa
gtgactaaggcaattgctgaaggatagaaatggaccaaatatccagagga
acaatactcatggctataaagtgggaggacttacttctgtgcacattgaa
atttctaagactaatgaatggatagtttgtcagaataatggtgctgtagt
agctaaaatcatttataaaggaacagtggtaccttggagataatcagatg
acttaattaagttggcaccagctattgatttgagattcagaggtgggcat
ttaatggaagatacttgtattatttgcactttgtaaaaaaaaaaaaaaca
aaaaaacccccaaaaaaaccaaaaaccaaaaaacaaaaaaccaaaaacaa
acaaacaaaaaaccaactgatgatatttcgcaatgcaattacttggtttc
tgttggtcttaatgtgagagtacactactttgtgctttgaccttgatacc
acccacttcatgacacatactgcagcatactgaggtatatccaaaagtaa
ctaagtggtatcagaaatctcagagaacccaatggaaatgtgacttctag
gtaatgattctacttgtacaatagtaccatccgatcactgttgtgaaatt
cctgagtcaggccattcgcctccagagctggaataataaaataaaaagac
actcagtagactgttgaaggaggaatccattttctcatttattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_150038671_150038773
seq2: B6Ng01-052I17.b_706_803 (reverse)

seq1  CCCACTCATTCCCATTTTTTTTTTTTTTTTTTTTTGGCCCTGGCGTTCCC  50
      ||||||||||||||     |||||||||||||||||||  |||| |||||
seq2  CCCACTCATTCCCA-----TTTTTTTTTTTTTTTTGGCATTGGCATTCCC  45

seq1  CTGTACTGGGGCATATACAGTTTGCATGTCCAATGGGCCTCTCTTTCTAG  100
      ||||||||||||||||||| ||||||||||||||||||||||||||| ||
seq2  CTGTACTGGGGCATATACAATTTGCATGTCCAATGGGCCTCTCTTTCCAG  95

seq1  TGA  103
      |||
seq2  TGA  98

seq1: chr1_96738489_96739584
seq2: B6Ng01-052I17.g_66_1160

seq1  GAATTCAAATAGAGAAAACGATAGCAATGATTCAATACATTATGACTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATAGAGAAAACGATAGCAATGATTCAATACATTATGACTATT  50

seq1  GAAGTAAGCGACTGTGGTGCTTTGAATGAGAGTGGCCCCTATAGGCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAGCGACTGTGGTGCTTTGAATGAGAGTGGCCCCTATAGGCTTCT  100

seq1  GTATTTGGTCATTGGTTGGCAGCACTCTTTGAAAAGGATTAAGAGGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGGTCATTGGTTGGCAGCACTCTTTGAAAAGGATTAAGAGGTTCA  150

seq1  GTCTTGTTAAAGGAGGTATATCCTGTTTGCAGTCTTTACAGTTTCATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTTAAAGGAGGTATATCCTGTTTGCAGTCTTTACAGTTTCATAAT  200

seq1  GTGTGCCTTCTCAGCTTGCTCTCTCTCATGGTCTCTGTCTCAAGATGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCCTTCTCAGCTTGCTCTCTCTCATGGTCTCTGTCTCAAGATGTAA  250

seq1  GCTCTCAGCTACTGCCCCAGTGCCATGCCAGTCTTCCTGATACCATGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCAGCTACTGCCCCAGTGCCATGCCAGTCTTCCTGATACCATGAGA  300

seq1  GTTATTGACTTTAACTCTCTGAAACTATAAGCTTTAAACAAAATCTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGACTTTAACTCTCTGAAACTATAAGCTTTAAACAAAATCTTTTT  350

seq1  TTTCCCTATATTTTCTCTTGGTCATGTTGTCTTATCACAGCAGTATAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTATATTTTCTCTTGGTCATGTTGTCTTATCACAGCAGTATAAAA  400

seq1  GTGACTAAGGCAATTGCTGAAGGATAGAAATGGACCAAATATCCAGAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTAAGGCAATTGCTGAAGGATAGAAATGGACCAAATATCCAGAGGA  450

seq1  ACAATACTCATGGCTATAAAGTGGGAGGACTTACTTCTGTGCACATTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACTCATGGCTATAAAGTGGGAGGACTTACTTCTGTGCACATTGAA  500

seq1  ATTTCTAAGACTAATGAATGGATAGTTTGTCAGAATAATGGTGCTGTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTAAGACTAATGAATGGATAGTTTGTCAGAATAATGGTGCTGTAGT  550

seq1  AGCTAAAATCATTTATAAAGGAACAGTGGTACCTTGGAGATAATCAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAAATCATTTATAAAGGAACAGTGGTACCTTGGAGATAATCAGATG  600

seq1  ACTTAATTAAGTTGGCACCAGCTATTGATTTGAGATTCAGAGGTGGGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATTAAGTTGGCACCAGCTATTGATTTGAGATTCAGAGGTGGGCAT  650

seq1  TTAATGGAAGATACTTGTATTATTTGCACTTTGTAAAAAAAAAAAAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGAAGATACTTGTATTATTTGCACTTTGTAAAAAAAAAAAAAACA  700

seq1  AAAAAACCCCCAAAAAAACCAAAAACCAAAAAACAAAAAACCAAAAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCCCCAAAAAAACCAAAAACCAAAAAACAAAAAACCAAAAACAA  750

seq1  ACAAACAAAAAACCAACTGATGATATTTCGCAATGCAATTACTTGGTTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAAAAACCAACTGATGATATTTCGCAATGCAATTACTTGGTTTC  800

seq1  TGTTGGTCTTAATGTGAGAGTAACACTACTTTGTGCTTTGACCTTGATAC  850
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TGTTGGTCTTAATGTGAGAGT-ACACTACTTTGTGCTTTGACCTTGATAC  849

seq1  CACCCACTTCATGACACATACTGCAAGCATACTGAGGTATATCCAAAAGT  900
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CACCCACTTCATGACACATACTGC-AGCATACTGAGGTATATCCAAAAGT  898

seq1  AACTAAGT-GTATCAGAAATCTCAGAGAACCCAATGGAAATGTGACTTCT  949
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGTGGTATCAGAAATCTCAGAGAACCCAATGGAAATGTGACTTCT  948

seq1  AGGTAATGATTTCTACTGTAACAATAGTACCATCCGATCACTGTTGTGAA  999
      ||||||||| |||||||   ||||||||||||||||||||||||||||||
seq2  AGGTAATGA-TTCTACTTGTACAATAGTACCATCCGATCACTGTTGTGAA  997

seq1  ATTCCTGAGTCAGGGGCATTCG-CTCCAGAGCTG--ATAATAAAATTAAA  1046
      |||||||||||| || |||||| |||||||||||  ||||||||| ||||
seq2  ATTCCTGAGTCA-GGCCATTCGCCTCCAGAGCTGGAATAATAAAA-TAAA  1045

seq1  AAGAACATCAGTAGAACTG-TGAAAGAGGAATCATATTTCTATTTTATTC  1095
      ||||   ||||||| |||| |||| ||||||||   |||||  |||||||
seq2  AAGACACTCAGTAG-ACTGTTGAAGGAGGAATCCATTTTCTCATTTATTC  1094

seq1  T  1096
      |
seq2  T  1095