BAC Information

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BAC

Clone NameB6Ng01-052N20
Chromosome1 (Build37)
Map Location 43,609,130 - 43,768,328
singlet/doubletdoublet
Overlap geneNck2
Upstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644
Downstream gene1500015O10Rik, Uxs1, LOC666676, LOC100042303, EG666690, Tpp2, A530098C11Rik, EG666713, 1700029F09Rik, Kdelc1, Bivm, Ercc5, 4832428D23Rik, LOC435619, Txn-ps1, Gulp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052N20.bB6Ng01-052N20.g
ACCDH876088DH876089
length8731,129
definitionDH876088|Mus musculus domesticus DNA, BAC clone: B6Ng01-052N20, 5' end.DH876089|Mus musculus domesticus DNA, BAC clone: B6Ng01-052N20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,609,130 - 43,610,005)(43,767,197 - 43,768,328)
sequence
gaattcactgaagccaacagataggatcccactgttggtgcctgcatcag
gagttggttgttggaaccctagttataaggattctggagacagcactgga
aagtacttgtctctatatgtggtatagatggagtgagcagaccctctggt
taataggatttctggtctgccatgtttatatgagcttgctgtttatggct
tgggtccttgagaaatggatgtgaaggcttgcctcttaaaaaaaatcttt
tgataaaatacgtcaaattctaggagaaaagtcatacaggttttccatca
cacacaatcttcaatgtctcatatttttggttgtgagcctagcctttacc
agctgagccatctagtcagagacctgggattagggagactccagggagtc
tttgaacatgactgtagctgagagtcctagcagtggggcatatggagctt
gaattggccacctcctgtagcctaggacctaggacctagcacacacatac
acacacacacacacacacacacataaagcagatgtgcagcttggtcttca
tttgggtcctccaacaactggagcaggaactatctctgactctgttacct
acctgtggatcccattcccctaattgggctaccttgtctggcctcaatgg
gagatgtgcctagtcctgcagtgacttgaggtgtcaggatgggctagtac
aggacagggtgggggagctcccccttctcagagacgaaggggaggggaaa
gaggctgtgggagggctgggaggagaggtgggggccgatcgggatgtgtg
taagtttataaataaataatgggaaaaaagagaaaaaaaataaacacttt
tcaagttcttctgctggatttag
gaattcttcagacaagaagacaggagacagataattaccctgcagggaca
actacctaggctactgagtccagtatgaatgtgtctaccacttgtttctt
ctactgacggaaaataataaatactttaattatagaatggaaagattcat
ggaggagtaaattaaggggcacaaaggcaaatctaaccatactggctttc
ctgggaatctggtgttttagtcccgtgccaagaaaatgtgtcggtaaagc
cctgtaattacaaaacatactttaagtctcactagaaaacatttaaatga
gggcttgcttactgtttcagaggtttagtttatcagtatcatgaatggga
acatggtggcatgcaggcaggcactggagcagtagctaaatgctacacct
tgaccccaaggcagagagagagactgggtctggccctgggcttttgaaac
tttgaagtctaccctcagttacatactttctacaacaaggccacatctcc
aaatccttctaatcctttcaaatagtaccattctctggtcactaaacatc
taaatatatgagcttatgaggacattctcatcccacttcctagctccatc
caaacaatagggactggctttattatacttgggggctttgatgtgaagtg
atgctgagatttgcctgttggatttaggcaaaatataaaacaatagataa
tgtctttgaaaagatgatagaacatattctttaattgatgctctatagtg
aatatagagattagacccatctatacaccaaggaccaaagactctgagcc
ccacaataggcaatgcataaattaatcagatctttctttcccagcttgtt
ccctcactgttgaatatagaattgtgcttttaagcaatttattctggact
ttaattcttcctgaatctatctgaattgcactaacccttttgacactttc
ctgagcctataaggacattatgccaggaatgagactggaggatggtggag
actaataaattattaccaggcatgtatacccattacatagcagtagttca
tcccattcaatcttgtgaaggcccgggaaggtttcttcatcccttcagta
gccacatcttttgtaaggtcaggctgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_43609130_43610005
seq2: B6Ng01-052N20.b_44_916

seq1  GAATTCACTGAAGCCAACAGATAGGATCCCACTGTTGGTGCCTGCATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAAGCCAACAGATAGGATCCCACTGTTGGTGCCTGCATCAG  50

seq1  GAGTTGGTTGTTGGAACCCTAGTTATAAGGATTCTGGAGACAGCACTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGTTGTTGGAACCCTAGTTATAAGGATTCTGGAGACAGCACTGGA  100

seq1  AAGTACTTGTCTCTATATGTGGTATAGATGGAGTGAGCAGACCCTCTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTTGTCTCTATATGTGGTATAGATGGAGTGAGCAGACCCTCTGGT  150

seq1  TAATAGGATTTCTGGTCTGCCATGTTTATATGAGCTTGCTGTTTATGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGGATTTCTGGTCTGCCATGTTTATATGAGCTTGCTGTTTATGGCT  200

seq1  TGGGTCCTTGAGAAATGGATGTGAAGGCTTGCCTCTTAAAAAAAATCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCTTGAGAAATGGATGTGAAGGCTTGCCTCTTAAAAAAAATCTTT  250

seq1  TGATAAAATACGTCAAATTCTAGGAGAAAAGTCATACAGGTTTTCCATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAATACGTCAAATTCTAGGAGAAAAGTCATACAGGTTTTCCATCA  300

seq1  CACACAATCTTCAATGTCTCATATTTTTGGTTGTGAGCCTAGCCTTTACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAATCTTCAATGTCTCATATTTTTGGTTGTGAGCCTAGCCTTTACC  350

seq1  AGCTGAGCCATCTAGTCAGAGACCTGGGATTAGGGAGACTCCAGGGAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGCCATCTAGTCAGAGACCTGGGATTAGGGAGACTCCAGGGAGTC  400

seq1  TTTGAACATGACTGTAGCTGAGAGTCCTAGCAGTGGGGCATATGGAGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACATGACTGTAGCTGAGAGTCCTAGCAGTGGGGCATATGGAGCTT  450

seq1  GAATTGGCCACCTCCTGTAGCCTAGGACCTAGGACCTAGCACACACATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGCCACCTCCTGTAGCCTAGGACCTAGGACCTAGCACACACATAC  500

seq1  ACACACACACACACACACACACATAAAGCAGATGTGCAGCTTGGTCTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACATAAAGCAGATGTGCAGCTTGGTCTTCA  550

seq1  TTTGGGTCCTCCAACAACTGGAGCAGGAACTATCTCTGACTCTGTTACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGTCCTCCAACAACTGGAGCAGGAACTATCTCTGACTCTGTTACCT  600

seq1  ACCTGTGGATCCCATTCCCCTAATTGGGCTACCTTGTCTGGCCTCAATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGGATCCCATTCCCCTAATTGGGCTACCTTGTCTGGCCTCAATGG  650

seq1  GAGATGTGCCTAGTCCTGCAGTGACTTGAGGTGTCAGGATGGGCTAGTAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTGCCTAGTCCTGCAGTGACTTGAGGTGTCAGGATGGGCTAGTAC  700

seq1  AGGACAGGGT-GGGGAGCTCCCCCTTCTCAGAGACGAAGGGGAGGGGAAA  749
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGGGTGGGGGAGCTCCCCCTTCTCAGAGACGAAGGGGAGGGGAAA  750

seq1  GAGGCTGTGGGAGGGCTGGGAGGAGAGGTGGGGGCCGATCGGGATGTGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGTGGGAGGGCTGGGAGGAGAGGTGGGGGCCGATCGGGATGTGTG  800

seq1  TAAAGTTAATAAATAAAATAATGGGAAAAAAGAGAAAAAAAATAAACACT  849
      | ||||| |||||| |||||||||||||||||||||||||||||||||||
seq2  T-AAGTTTATAAAT-AAATAATGGGAAAAAAGAGAAAAAAAATAAACACT  848

seq1  CTTCAAAGTTCTTCTGCCTGGATTTAG  876
       ||| ||||||||||| ||||||||||
seq2  TTTC-AAGTTCTTCTG-CTGGATTTAG  873

seq1: chr1_43767197_43768328
seq2: B6Ng01-052N20.g_68_1196 (reverse)

seq1  TCTCAGCTTGACCTTTCCAAAGATTGTGGCTTCCTGAGGG-TGAAGAA--  47
      ||||||| ||||||| | ||||| ||||||| |   |||| |||||||  
seq2  TCTCAGCCTGACCTTACAAAAGA-TGTGGCTACTGAAGGGATGAAGAAAC  49

seq1  CCTCCCGGGGCTTCACAGAGATTGAAATGGAATG-ACTACTGCTATGT-A  95
      | ||||||| ||||||| |||||| ||||| ||| ||||||||||||| |
seq2  CTTCCCGGGCCTTCACA-AGATTG-AATGGGATGAACTACTGCTATGTAA  97

seq1  TGGTTATACATGCCTGGTAATAATTTATTAGTCTCCA-CAT-CTCCAGTC  143
      ||| ||||||||||||||||||||||||||||||||| ||| ||||||||
seq2  TGGGTATACATGCCTGGTAATAATTTATTAGTCTCCACCATCCTCCAGTC  147

seq1  TCATTTCCTGGCATAATGTCCTTATTAGGCTTCAGGAAAGTGTCAAAAAG  193
      ||| |||||||||||||||||||| ||||| ||||||||||||| |||||
seq2  TCA-TTCCTGGCATAATGTCCTTA-TAGGC-TCAGGAAAGTGTC-AAAAG  193

seq1  GGTTAGTGCAATTCAGACTAGATTCAAGAAGAATTTAAAGTCCAGAATAA  243
      ||||||||||||||||| |||||||| |||||| ||||||||||||||||
seq2  GGTTAGTGCAATTCAGA-TAGATTCAGGAAGAA-TTAAAGTCCAGAATAA  241

seq1  ATTGCTTAAAAGCACAATTCTATATTCAACAGTGAGGGAACAAGCTGGGA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTAAAAGCACAATTCTATATTCAACAGTGAGGGAACAAGCTGGGA  291

seq1  AAGGAAGATCTGATTAATTTTATGCATTTGCCTATTGTGGGGCTCAGAGT  343
      ||| ||||||||||||| |||||||| |||||||||||||||||||||||
seq2  AAGAAAGATCTGATTAA-TTTATGCA-TTGCCTATTGTGGGGCTCAGAGT  339

seq1  CTTTGGTCCTTGGTGTATAGATGGGTCTAATCTCTATATTCACTATAGAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTCCTTGGTGTATAGATGGGTCTAATCTCTATATTCACTATAGAG  389

seq1  CATCAATTAAAGAATATGTTCTATCATCTTTTCAAAGACATTATCTATTG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAATTAAAGAATATGTTCTATCATCTTTTCAAAGACATTATCTATTG  439

seq1  TTTTATATTTTGCCTAAATCCAACAGGCAAATCTCAGCATCACTTCACAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATTTTGCCTAAATCCAACAGGCAAATCTCAGCATCACTTCACAT  489

seq1  C-AAGCCCCCAAGTATAATAAAGCCAGTCCCTATTGTTTGGATGGAGCTA  542
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCCCCAAGTATAATAAAGCCAGTCCCTATTGTTTGGATGGAGCTA  539

seq1  GGAAGTGGGATGAGAATGTCCTCATAAGCTCATATATTTAGATGTTTAGT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGGGATGAGAATGTCCTCATAAGCTCATATATTTAGATGTTTAGT  589

seq1  GACCAGAGAATGGTACTATTTGAAAGGATTAGAAGGATTTGGAGATGTGG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGAGAATGGTACTATTTGAAAGGATTAGAAGGATTTGGAGATGTGG  639

seq1  CCTTGTTGTAGAAAGTATGTAACTGAGGGTAGACTTCAAAGTTTCAAAAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTGTAGAAAGTATGTAACTGAGGGTAGACTTCAAAGTTTCAAAAG  689

seq1  CCCAGGGCCAGACCCAGTCTCTCTCTCTGCCTTGGGGTCAAGGTGTAGCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGCCAGACCCAGTCTCTCTCTCTGCCTTGGGGTCAAGGTGTAGCA  739

seq1  TTTAGCTACTGCTCCAGTGCCTGCCTGCATGCCACCATGTTCCCATTCAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTACTGCTCCAGTGCCTGCCTGCATGCCACCATGTTCCCATTCAT  789

seq1  GATACTGATAAACTAAACCTCTGAAACAGTAAGCAAGCCCTCATTTAAAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGATAAACTAAACCTCTGAAACAGTAAGCAAGCCCTCATTTAAAT  839

seq1  GTTTTCTAGTGAGACTTAAAGTATGTTTTGTAATTACAGGGCTTTACCGA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTAGTGAGACTTAAAGTATGTTTTGTAATTACAGGGCTTTACCGA  889

seq1  CACATTTTCTTGGCACGGGACTAAAACACCAGATTCCCAGGAAAGCCAGT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTTCTTGGCACGGGACTAAAACACCAGATTCCCAGGAAAGCCAGT  939

seq1  ATGGTTAGATTTGCCTTTGTGCCCCTTAATTTACTCCTCCATGAATCTTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTAGATTTGCCTTTGTGCCCCTTAATTTACTCCTCCATGAATCTTT  989

seq1  CCATTCTATAATTAAAGTATTTATTATTTTCCGTCAGTAGAAGAAACAAG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTATAATTAAAGTATTTATTATTTTCCGTCAGTAGAAGAAACAAG  1039

seq1  TGGTAGACACATTCATACTGGACTCAGTAGCCTAGGTAGTTGTCCCTGCA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGACACATTCATACTGGACTCAGTAGCCTAGGTAGTTGTCCCTGCA  1089

seq1  GGGTAATTATCTGTCTCCTGTCTTCTTGTCTGAAGAATTC  1132
      ||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAATTATCTGTCTCCTGTCTTCTTGTCTGAAGAATTC  1129