BAC Information

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BAC

Clone NameB6Ng01-052O06
Chromosome1 (Build37)
Map Location 33,588,063 - 33,589,038
singlet/doubletsinglet
Overlap genePrim2
Upstream geneKhdrbs2, EG408191, EG633498, LOC213711, LOC100040828, EG666108
Downstream gene1700001G17Rik, Rab23, Bag2, Zfp451, OTTMUSG00000022109, B230209C24Rik, Dst, LOC100040913, LOC383629, LOC100040938, Ccdc115, Imp4, Ptpn18, Tesp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052O06.bB6Ng01-052O06.g
ACCDH876108DH876109
length9761,183
definitionDH876108|Mus musculus domesticus DNA, BAC clone: B6Ng01-052O06, 5' end.DH876109|Mus musculus domesticus DNA, BAC clone: B6Ng01-052O06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctgctggtaagaactataactggagaatggttgtgtgtccttta
ggtcaggtgtcatgttctgtggtcatgtagttccttcttttcggcctgac
ccagacagaggcagtttcctgctattgcaggatttgatgctgttattgtc
ctcccactgcccgtagccagggttatatcccacacctactaggtgccatg
tgatctgcagagtgaagtgcaacatatgcctacagatgtctctgatatct
tttgttttccttctgaatgaaattcttatattttataaatcagtttgccc
taaaattttgctggttccacacgtaagtaaaagaggttgcttcttagctc
tagtggatacttgattctgtgcaatcatgacagattcgcttccttccatc
tcagtatggtaattgtcacctagaatttagattaactaccgatgtctctt
tgagtccttgaaacttgaacaaactgtacatttgtttagggctttcattc
tccatggagttcattcaagactggttgctaggcaactaggcctggatgtt
gcttttttattgttattaaaccaaatggcttctcattttattactgtgtc
agaggcatctgtaggtagggtggcagctggtgtgcatagcttggcacctc
ctgttctacagagtaaccctaggggatgtgcctttcaagcatgttggatt
gtctcttggctgtcaagtatgatgtttttctttgatctttccttttttaa
ggccaaagtggcaaagaactgggctaaggacgtagctcagtgggtagagt
gctttttatagtgagcatgaaaccttgaggtcgatctctctagcatgaca
tcagcagggtttggcaacatatgctcttgggagatagaggcatgatgatt
acaacttcaagtcattctccactgtgtagaaagctataggcaggtctagg
atgcatgggacttgagggaggaggga
gaattcttctgtcaaatggagattccctacagatacttaaaagaacagcc
aagtaactctcatatgtaagtatttaccaaggcctaggaaaaaggggggt
tgtgttattgcattattcatgagaaggtctgctagagcagaacccctggt
gctagctttcacaaggctcaaaggagtagaataaattgtgactagggtgt
gaaatccttacctgtcattagctgactctaggcagggctgtcttatcttt
actgtaaacattgcctggttcctgtcagtcctttgaagtcatttctctgt
tttgtatcagatacttcaatgtaccttgcctactgtgacaccctactcct
tttttttttctgtattatatgagactggtgttcacttcgtgaaaatacat
ccagatacagcactcccttgtgttcatgtctgtttgtcattcatgtctca
ccaactccattgcccacctgtctgggaaccctaatttcccatggattgag
ggggaccgactgagcccggtccatggcactataaactgggaattttcact
ctcttctatacatattaaccttaggtttggtcttttttgtgtcctagatt
ttctgtatgttttgggttaggagatttttgccttttgcattttctttgac
ttttgtgtcaatgttttctatggtatcttctgcacctgagagtctctctt
ctctctcttgtattctgttggtgatgcttgcatctatgactcctgatctc
tttcctaggttttctaactccagggctgtctccctttgtgatttctttat
tgtttttatgtccatttttagattttggatggttttgttcatttccttca
cctgtttgattgtgttgtcatgtaattctttaagggacttttgtgtttcc
tctttaaggattctagctgtttatctgtgttcttctgtatttctttagag
agttatttatgtccttcttaaagtcctcatccatcatcatgagaaatgaa
tttagatctaaatcttgctttttcctggtgttcaggtatccaggacttgc
tatggtgggagaatcggtctgaatatgccagaaactggtttcgttgctat
gtttcttttgcttgtaaccggttccacagtcaccatccttacctaaacga
ctggagaactgtccttcttgatctgtgtggtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_33588063_33589038
seq2: B6Ng01-052O06.b_48_1023 (reverse)

seq1  TCCCT-CTCCCTCAAGTCCCATGCATCCTAGACCTGCCTATAGCTCTCTA  49
      ||||| ||||||||||||||||||||||||||||||||||||||| ||||
seq2  TCCCTCCTCCCTCAAGTCCCATGCATCCTAGACCTGCCTATAGCTTTCTA  50

seq1  CACAGTGGAGAATGACCTTGAAGTTGTAATCATCATGCCTCTATCTCCCA  99
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CACAGTGGAGAATGA-CTTGAAGTTGTAATCATCATGCCTCTATCTCCCA  99

seq1  AGAGCATATGTTGCCAAACCCTGCTGATGTCATGCTAGAGAGATCGACCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATATGTTGCCAAACCCTGCTGATGTCATGCTAGAGAGATCGACCT  149

seq1  CAAGGTTTCATGCTCACTATAAAAAGCACTCTACCCACTGAGCTACGTCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTTCATGCTCACTATAAAAAGCACTCTACCCACTGAGCTACGTCC  199

seq1  TTAGCCCAGTTCTTTGCCACTTTGGCCTTAAAAAAGGAAAGATCAAAGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCCAGTTCTTTGCCACTTTGGCCTTAAAAAAGGAAAGATCAAAGAA  249

seq1  AAACATCATACTTGACAGCCAAGAGACAATCCAACATGCTTGAAAGGCAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCATACTTGACAGCCAAGAGACAATCCAACATGCTTGAAAGGCAC  299

seq1  ATCCCCTAGGGTTACTCTGTAGAACAGGAGGTGCCAAGCTATGCACACCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTAGGGTTACTCTGTAGAACAGGAGGTGCCAAGCTATGCACACCA  349

seq1  GCTGCCACCCTACCTACAGATGCCTCTGACACAGTAATAAAATGAGAAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCACCCTACCTACAGATGCCTCTGACACAGTAATAAAATGAGAAGC  399

seq1  CATTTGGTTTAATAACAATAAAAAAGCAACATCCAGGCCTAGTTGCCTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGGTTTAATAACAATAAAAAAGCAACATCCAGGCCTAGTTGCCTAG  449

seq1  CAACCAGTCTTGAATGAACTCCATGGAGAATGAAAGCCCTAAACAAATGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAGTCTTGAATGAACTCCATGGAGAATGAAAGCCCTAAACAAATGT  499

seq1  ACAGTTTGTTCAAGTTTCAAGGACTCAAAGAGACATCGGTAGTTAATCTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTGTTCAAGTTTCAAGGACTCAAAGAGACATCGGTAGTTAATCTA  549

seq1  AATTCTAGGTGACAATTACCATACTGAGATGGAAGGAAGCGAATCTGTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTAGGTGACAATTACCATACTGAGATGGAAGGAAGCGAATCTGTCA  599

seq1  TGATTGCACAGAATCAAGTATCCACTAGAGCTAAGAAGCAACCTCTTTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCACAGAATCAAGTATCCACTAGAGCTAAGAAGCAACCTCTTTTA  649

seq1  CTTACGTGTGGAACCAGCAAAATTTTAGGGCAAACTGATTTATAAAATAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACGTGTGGAACCAGCAAAATTTTAGGGCAAACTGATTTATAAAATAT  699

seq1  AAGAATTTCATTCAGAAGGAAAACAAAAGATATCAGAGACATCTGTAGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATTTCATTCAGAAGGAAAACAAAAGATATCAGAGACATCTGTAGGC  749

seq1  ATATGTTGCACTTCACTCTGCAGATCACATGGCACCTAGTAGGTGTGGGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTGCACTTCACTCTGCAGATCACATGGCACCTAGTAGGTGTGGGA  799

seq1  TATAACCCTGGCTACGGGCAGTGGGAGGACAATAACAGCATCAAATCCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACCCTGGCTACGGGCAGTGGGAGGACAATAACAGCATCAAATCCTG  849

seq1  CAATAGCAGGAAACTGCCTCTGTCTGGGTCAGGCCGAAAAGAAGGAACTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCAGGAAACTGCCTCTGTCTGGGTCAGGCCGAAAAGAAGGAACTA  899

seq1  CATGACCACAGAACATGACACCTGACCTAAAGGACACACAACCATTCTCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCACAGAACATGACACCTGACCTAAAGGACACACAACCATTCTCC  949

seq1  AGTTATAGTTCTTACCAGCAGGAATTC  976
      |||||||||||||||||||||||||||
seq2  AGTTATAGTTCTTACCAGCAGGAATTC  976