BAC Information

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BAC

Clone NameB6Ng01-053C17
Chromosome1 (Build37)12 (Build37)
Map Location 47,953,114 - 47,953,60964,964,564 - 64,965,599
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG227061, LOC666869
Downstream geneLOC546734, LOC674566, LOC100041936, LOC666903, LOC666909
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053C17.bB6Ng01-053C17.g
ACCDH876296DH876297
length1,1351,036
definitionDH876296|Mus musculus domesticus DNA, BAC clone: B6Ng01-053C17, 5' end.DH876297|Mus musculus domesticus DNA, BAC clone: B6Ng01-053C17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(47,953,114 - 47,953,609)(64,964,564 - 64,965,599)
sequence
gaattcaaggcccctacgtaaacaaaatataagcaatatacaggaaatca
gtagccaatatcaaactaaatggagagaaacttgtagcaatcccactaaa
atcagggagtagacaaggctgtccactttctccctacctattcaatacag
tactagaaatcccagtcagagcaattagacaacaaaaggtgatcaaaggg
atacaaattggaaagtaagaagtcaaaatatctctatttgcaggtgatat
tgtagaacatataagtgaccctaaaaactaagccagagaactcctagacc
tgataaacaatttcagtgaagtagctggatataaaattaactcaaacaaa
tcagtggccttattctacacaaaggataaacaggctgaaaaagaacttag
ggaaacatcaccctttacaatagtcaaaaataatataaaataccttggtg
tgactctaagtaaggaagtgaaagatctgtatgagtagaacttcaagttt
ctgaagaaagaaattgaataagatctcagaagatggaaagatctcccatg
ttcatggattagcaggatcaatgtagtaaaaatagctatgttgccaaaag
cagcctaaagattcattgcaatttccatcaaaattccaactcaactcttc
acagaattaggaaagttaatttgcaaattcatctggaataacaaaaaacc
taggataacaaaaactatttgttgggagccaaaactaaattctttataat
aatccaagtgaaaaagatgactaccaagtcttaagacataaagctggacc
ttctccccaagctgactaagtccagatgaaggtcaccagcaattaccaca
aaatgatccagacctgacgtaaacagcagatgtcataaccacaagatgta
ttttagatatcatgcttccccttgtagctgccaaggaaaattaccactgc
tccccactgcccttctgcataagggttatctccctttgtcttttgtataa
aaactgcaagttttgctgaatacatgaaaccttgacagatccagattgac
tccatgtctttctgtgcttgggtctccgtttctctctttgccccattgtt
ttcagggacgtcctctcgaggacccacgaataact
gaattctattgtatgaagcttgtcgcagaaaaagcatgttaggcaggtga
tgaacaacggaggctgagaacaaaaacatattggtttgaaaatgtattgc
acaggaataaatgcagagtaaaggtcatcattttaagttttatgtttctc
tttggatttcagaaatgaaccagtaatgtgtttggtcctataagcatatt
acaaaaatataccagaaatggggctattatgttcttttcctttgacttca
tgtgaataagttccaataaaaatgcattgagaaattcaaataagccaggg
ccgttcctgaagcaattcccagagaataatgtgcctccatgattaggtgc
ttcagaatctgtgtgttggagatcatttgattaaatcagagaacatatac
ctcaagtgctgacagtttttctgttaccatgttatattatctatatgcat
ggatacacttgagcccataatatttgataacaatttgtaaactagatttg
attaaaggatgggaaatgcatgacctctgaaacagccagttaggttcatt
tttagttaaaagaggctttttccttatctaggagactttctgttgttatg
ataaaataattaataggagtaacttttaaggagaaatggtttattttgtc
ttccccttttggggagaaatagtccatccagatgagggagatatgacagc
aggtaggagaggcaagggtatgaaagttgccctgaatctgtactcaggta
gcagaaaaagaacaggaagtgaaggtgagttataaagtcgcaaaggctca
cacagtacccacttcctttagcatgctccatcttcctgaatatttcatac
ctatgtcaagccgttgccatcagctgggcacatggtgttctaacatatgg
gcctttcatggaacttgaccatgacaccacaacatttactgcatcttacc
atagcaatttccaagggatgtagatttctttagagctagtgatagacaag
gctgttgctgatactttatgtacaacctttcctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_47953114_47953609
seq2: B6Ng01-053C17.b_755_1180

seq1  AAAAACATAGTTTGCTGGGAGCCAAAACTAAATTCTTTATAATAATCCAA  50
      |||||| || |||| |||||||||||||||||||||||||||||||||||
seq2  AAAAAC-TA-TTTGTTGGGAGCCAAAACTAAATTCTTTATAATAATCCAA  48

seq1  GTGAAAAAGATGACTACCAAGTCTTAAGACATAAAGTTGGACCTCCTCCC  100
      ||||||||||||||||||||||||||||||||||                
seq2  GTGAAAAAGATGACTACCAAGTCTTAAGACATAA----------------  82

seq1  CAAGCTGACTGAGTCCAGACGAAGGTCACCAACGGACTGTTCCAGTTGGA  150
                                                 || ||||
seq2  -------------------------------------------AGCTGGA  89

seq1  CCTCCTCCCCAAGCTGACTAAGTCCAGATGAAGGTCACCAACAATTACCA  200
      ||| |||||||||||||||||||||||||||||||||||| |||||||||
seq2  CCTTCTCCCCAAGCTGACTAAGTCCAGATGAAGGTCACCAGCAATTACCA  139

seq1  CAAGATGATCCAGACATGACATAAACAGCAGATGTCATAACCACAAGATG  250
      ||| ||||||||||| |||| |||||||||||||||||||||||||||||
seq2  CAAAATGATCCAGACCTGACGTAAACAGCAGATGTCATAACCACAAGATG  189

seq1  TACTTTTAGATATCATGCTTCCCCTTGTAGCTGTCAAAGAAAATCACCAC  300
      || |||||||||||||||||||||||||||||| ||| |||||| |||||
seq2  TA-TTTTAGATATCATGCTTCCCCTTGTAGCTGCCAAGGAAAATTACCAC  238

seq1  TACTCCCCCCTACCCTTCTGCGTAAGGGTTATTTTCCCTTTGATCTTTTT  350
      | |||||| || ||||||||| ||||||||| | |||||||| || ||||
seq2  TGCTCCCCACTGCCCTTCTGCATAAGGGTTA-TCTCCCTTTG-TC-TTTT  285

seq1  GTATAAAAATTGCAAGTTTTGCAGAATACAATGAGACCTTGACAAGATTC  400
      ||||||||| |||||||||||| |||||| |||| |||||||| |||| |
seq2  GTATAAAAACTGCAAGTTTTGCTGAATAC-ATGAAACCTTGAC-AGATCC  333

seq1  AGATCGACTCCGTGTCTTTTCTGTGCTT-GGTCTCCGTTTCTCTCTCACC  449
      |||| |||||| |||| ||||||||||| |||||||||||||||||    
seq2  AGATTGACTCCATGTC-TTTCTGTGCTTGGGTCTCCGTTTCTCTCT-TTG  381

seq1  CCCCATTTGGTGTTCAGGAACAGTCCCCTCGA-GACCCACGAATAACT  496
      |||||||  || |||||| || |||| ||||| |||||||||||||||
seq2  CCCCATT--GTTTTCAGGGAC-GTCCTCTCGAGGACCCACGAATAACT  426

seq1: chr12_64964564_64965599
seq2: B6Ng01-053C17.g_71_1106

seq1  GAATTCTATTGTATGAAGCTTGTCGCAGAAAAAGCATGTTAGGCAGGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTGTATGAAGCTTGTCGCAGAAAAAGCATGTTAGGCAGGTGA  50

seq1  TGAACAACGGAGGCTGAGAACAAAAACATATTGGTTTGAAAATGTATTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAACGGAGGCTGAGAACAAAAACATATTGGTTTGAAAATGTATTGC  100

seq1  ACAGGAATAAATGCAGAGTAAAGGTCATCATTTTAAGTTTTATGTTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAATAAATGCAGAGTAAAGGTCATCATTTTAAGTTTTATGTTTCTC  150

seq1  TTTGGATTTCAGAAATGAACCAGTAATGTGTTTGGTCCTATAAGCATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATTTCAGAAATGAACCAGTAATGTGTTTGGTCCTATAAGCATATT  200

seq1  ACAAAAATATACCAGAAATGGGGCTATTATGTTCTTTTCCTTTGACTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATATACCAGAAATGGGGCTATTATGTTCTTTTCCTTTGACTTCA  250

seq1  TGTGAATAAGTTCCAATAAAAATGCATTGAGAAATTCAAATAAGCCAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATAAGTTCCAATAAAAATGCATTGAGAAATTCAAATAAGCCAGGG  300

seq1  CCGTTCCTGAAGCAATTCCCAGAGAATAATGTGCCTCCATGATTAGGTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTCCTGAAGCAATTCCCAGAGAATAATGTGCCTCCATGATTAGGTGC  350

seq1  TTCAGAATCTGTGTGTTGGAGATCATTTGATTAAATCAGAGAACATATAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAATCTGTGTGTTGGAGATCATTTGATTAAATCAGAGAACATATAC  400

seq1  CTCAAGTGCTGACAGTTTTTCTGTTACCATGTTATATTATCTATATGCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTGCTGACAGTTTTTCTGTTACCATGTTATATTATCTATATGCAT  450

seq1  GGATACACTTGAGCCCATAATATTTGATAACAATTTGTAAACTAGATTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACACTTGAGCCCATAATATTTGATAACAATTTGTAAACTAGATTTG  500

seq1  ATTAAAGGATGGGAAATGCATGACCTCTGAAACAGCCAGTTAGGTTCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGATGGGAAATGCATGACCTCTGAAACAGCCAGTTAGGTTCATT  550

seq1  TTTAGTTAAAAGAGGCTTTTTCCTTATCTAGGAGACTTTCTGTTGTTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTAAAAGAGGCTTTTTCCTTATCTAGGAGACTTTCTGTTGTTATG  600

seq1  ATAAAATAATTAATAGGAGTAAC-TTTAAGGAGAAATGGTTTATTTTGTC  649
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATAAAATAATTAATAGGAGTAACTTTTAAGGAGAAATGGTTTATTTTGTC  650

seq1  TTCCCCTTTTGGGGAGAAATAGTCCATCCAGATGAGGGAGATATGACAGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTTTTGGGGAGAAATAGTCCATCCAGATGAGGGAGATATGACAGC  700

seq1  AGGTAGGAGAGGCAAGGGTATGAAAGTTGCCCTGAATCTGTACTCAGGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGGAGAGGCAAGGGTATGAAAGTTGCCCTGAATCTGTACTCAGGTA  750

seq1  GCAGAAAAAGAACAGGAAGTGAAGGTGAGTTATAAAGTCGCAAAGGCTCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAAAAGAACAGGAAGTGAAGGTGAGTTATAAAGTCGCAAAGGCTCA  800

seq1  CACAGTACCCACTTCCTTTAGCAATGCTCCATCTTCCTGAATATTTCATA  849
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CACAGTACCCACTTCCTTTAGC-ATGCTCCATCTTCCTGAATATTTCATA  849

seq1  CCTATGTCAAGCCG-TGCCATCAGCTGGGCACATGGTGTTCTAACATATG  898
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCTATGTCAAGCCGTTGCCATCAGCTGGGCACATGGTGTTCTAACATATG  899

seq1  GGCCTTTCATGGAACTTTGACCATGACACCACAACA-TTACTGCAATCTT  947
      ||||||||||||||| |||||||||||||||||||| ||||||| |||||
seq2  GGCCTTTCATGGAAC-TTGACCATGACACCACAACATTTACTGC-ATCTT  947

seq1  ACCATAGCAA-TTCCCAGGGATGTAGATTTCTTTAGAGCTAGTGATAGAC  996
      |||||||||| |||| ||||||||||||||||||||||||||||||||||
seq2  ACCATAGCAATTTCCAAGGGATGTAGATTTCTTTAGAGCTAGTGATAGAC  997

seq1  AAGGCTTGTTTGCTGATCTTGTATGTACAA-CTTTTCTCTG  1036
      ||||||   ||||||||  | ||||||||| |||| |||||
seq2  AAGGCT--GTTGCTGATACTTTATGTACAACCTTTCCTCTG  1036