BAC Information

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BAC

Clone NameB6Ng01-053G22
Chromosome1 (Build37)
Map Location 55,139,730 - 55,369,434
singlet/doubletdoublet
Overlap geneHspd1, Hspe1, LOC381258, Prei3, EG627998, Rftn2, Mars2
Upstream geneHecw2, 4930511H11Rik, Gtf3c3, EG627915, D230012E17Rik, Ankrd44, Sf3b1, Coq10b
Downstream geneLOC666793, Boll, EG632964, LOC667237, LOC626009, 9130227L01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053G22.bB6Ng01-053G22.g
ACCDH876479DH876480
length803157
definitionDH876479|Mus musculus domesticus DNA, BAC clone: B6Ng01-053G22, 5' end.DH876480|Mus musculus domesticus DNA, BAC clone: B6Ng01-053G22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,139,730 - 55,140,532)(55,369,278 - 55,369,434)
sequence
gaattcattgttaagaggcaaagctcccgattcagactaatggtgagcac
atactacagatgttaagacagaggaatgaattgtgtgggcacaaacaaga
gattcaagttttttatttggaaaacaggtgacagataccccattgaaggt
actatcaaaacgtatcaaatcccatacttgccttcactgtgatgacaccc
tttcttccaacctttttcattgcatcagaaatgatgttcccaatgtcttt
gtctccatttgcagaaattgtagcaacctgaaataaccaagttacttcaa
aattaaatactgattagtattttcaactttgacactctatactagtactt
tacagttaatagtaattttaatgaagtcctggttaaatggagacacaccc
tcagtccttccattatctgacaaagtaagaataaataaactaaaggggct
ggagagatggctcagtggttaagatgacttgctgttgttcaggtcagtac
ccagcatccacacagtggctggcaactgtctctaacatctccttctacgg
gttcaggcatgcatatggtgcacacacaaaaaaatacttgtctgctatgc
ttcaagggctaggtttgaacccacgcagcacagagtacactgatatcact
aagaatatctgcacaataacacaaatcttactttacagtcacatacaact
acaacaacaagccacctattaagatccaaattagtaggcatggcagtgat
gagccaaacactctggaggcagaggcagaggcaggggaatttgagttcag
gcc
attttttttccttaattaaaaacaaacacaaaatcctattgagccaaatg
aactggtttgtcaagaaaagtgtgaaaagggtaggatgagatcgaagatg
ctatttcttactgaaaaaaggcagacagacaaagagaaggggagggaggg
gaggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_55139730_55140532
seq2: B6Ng01-053G22.b_45_847

seq1  GAATTCATTGTTAAGAGGCAAAGCTCCCGATTCAGACTAATGGTGAGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGTTAAGAGGCAAAGCTCCCGATTCAGACTAATGGTGAGCAC  50

seq1  ATACTACAGATGTTAAGACAGAGGAATGAATTGTGTGGGCACAAACAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTACAGATGTTAAGACAGAGGAATGAATTGTGTGGGCACAAACAAGA  100

seq1  GATTCAAGTTTTTTATTTGGAAAACAGGTGACAGATACCCCATTGAAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAAGTTTTTTATTTGGAAAACAGGTGACAGATACCCCATTGAAGGT  150

seq1  ACTATCAAAACGTATCAAATCCCATACTTGCCTTCACTGTGATGACACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCAAAACGTATCAAATCCCATACTTGCCTTCACTGTGATGACACCC  200

seq1  TTTCTTCCAACCTTTTTCATTGCATCAGAAATGATGTTCCCAATGTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCCAACCTTTTTCATTGCATCAGAAATGATGTTCCCAATGTCTTT  250

seq1  GTCTCCATTTGCAGAAATTGTAGCAACCTGAAATAACCAAGTTACTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCCATTTGCAGAAATTGTAGCAACCTGAAATAACCAAGTTACTTCAA  300

seq1  AATTAAATACTGATTAGTATTTTCAACTTTGACACTCTATACTAGTACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATACTGATTAGTATTTTCAACTTTGACACTCTATACTAGTACTT  350

seq1  TACAGTTAATAGTAATTTTAATGAAGTCCTGGTTAAATGGAGACACACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTAATAGTAATTTTAATGAAGTCCTGGTTAAATGGAGACACACCC  400

seq1  TCAGTCCTTCCATTATCTGACAAAGTAAGAATAAATAAACTAAAGGGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCCTTCCATTATCTGACAAAGTAAGAATAAATAAACTAAAGGGGCT  450

seq1  GGAGAGATGGCTCAGTGGTTAAGATGACTTGCTGTTGTTCAGGTCAGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGATGGCTCAGTGGTTAAGATGACTTGCTGTTGTTCAGGTCAGTAC  500

seq1  CCAGCATCCACACAGTGGCTGGCAACTGTCTCTAACATCTCCTTCTACGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATCCACACAGTGGCTGGCAACTGTCTCTAACATCTCCTTCTACGG  550

seq1  GTTCAGGCATGCATATGGTGCACACACAAAAAAATACTTGTCTGCTATGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGGCATGCATATGGTGCACACACAAAAAAATACTTGTCTGCTATGC  600

seq1  TTCAAGGGCTAGGTTTGAACCCACGCAGCACAGAGTACACTGATATCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGGCTAGGTTTGAACCCACGCAGCACAGAGTACACTGATATCACT  650

seq1  AAGAATATCTGCACAATAACACAAATCTTAC-TTACAGCCACATACAACT  699
      ||||||||||||||||||||||||||||||| |||||| |||||||||||
seq2  AAGAATATCTGCACAATAACACAAATCTTACTTTACAGTCACATACAACT  700

seq1  ACAACAACAAGCCACCTATTAAGATCCAAATTAGTAGGCATGGCAGTGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACAAGCCACCTATTAAGATCCAAATTAGTAGGCATGGCAGTGAT  750

seq1  GAGCCAAACACTCTGGAGGCAGAGGCAGAGGCAGGGGAATTTGAGTTCAA  799
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GAGCCAAACACTCTGGAGGCAGAGGCAGAGGCAGGGGAATTTGAGTTC-A  799

seq1  GGCC  803
      ||||
seq2  GGCC  803

seq1: chr1_55369278_55369434
seq2: B6Ng01-053G22.g_73_229 (reverse)

seq1  CCTCCTCCCCTCCCTCCCCTTCTCTTTGTCTGTCTGCCTTTTTTCAGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCCCCTCCCTCCCCTTCTCTTTGTCTGTCTGCCTTTTTTCAGTAA  50

seq1  GAAATAGCATCTTCGATCTCATCCTACCCTTTTCACACTTTTCTTGACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGCATCTTCGATCTCATCCTACCCTTTTCACACTTTTCTTGACAA  100

seq1  ACCAGTTCATTTGGCTCAATAGGATTTTGTGTTTGTTTTTAATTAAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTTCATTTGGCTCAATAGGATTTTGTGTTTGTTTTTAATTAAGGAA  150

seq1  AAAAAAT  157
      |||||||
seq2  AAAAAAT  157