BAC Information

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BAC

Clone NameB6Ng01-054C09
Chromosome1 (Build37)1 (Build37)
Map Location 61,720,681 - 61,721,2525,885,804 - 5,886,964
singlet/doubletsingletsinglet
Overlap genePard3b
Upstream geneEif4a-ps4, Cd28, LOC667555, Rpl18-rs8, Ctla4, LOC100043049, Icos, LOC433313, LOC100042566
Downstream geneLOC667592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054C09.bB6Ng01-054C09.g
ACCDH876980DH876981
length9301,149
definitionDH876980|Mus musculus domesticus DNA, BAC clone: B6Ng01-054C09, 5' end.DH876981|Mus musculus domesticus DNA, BAC clone: B6Ng01-054C09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,720,681 - 61,721,252)(5,885,804 - 5,886,964)
sequence
gaattcctgatctttccaagacttttatcatgaatggatgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcagttagcgagaattttattgagtatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttgggt
ctttctgtggtttaggtatcagagtaatagtggcttcaaaaagtgagttg
ggtagagtaccttctatttctattttgtgaaatagtttgtgcagaactgg
aattagatcttccttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagatggtcaacttgatcctgattcagctt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaagtatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctctagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcatttggttaattctttga
atagttcttcttgtttccacttggttgatttcacccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttgcttcctttttttctagag
cttttagatgtgttgtcagctgctagtatg
gaattcagatagtagatagatgatagagattggtagtatgatggttcttc
ttggttgacaacttgactagatctggaatcaactaaaacccaatagtaga
gagcacacctgtaagggacttttgcacaattttaagtaagaagatctact
tctgatctggaactttcagatatgaagacatactttttatctggatcttt
tgaactgagaaaagacatgtctttaattgagaccatttgagctgggaaaa
cccacctctaatctgggccacaccttccgctggaagcctatataaagaca
caaaagaaggaagtgtttgatctttccctgattgcacttgccttactagc
acatccattacttcttgggtattagagcctaatttattgggattccagtg
tatactgaaaaccagctgagacatccagcttcatggaccaagaaactcct
gtagtcctggacatttcattcatagtctgctattgttggatcaactggac
tgcagactgtaagtcattttaataaatttctttccacatagatactagat
agatagatagatagatagatagagacagacagacagacagacagacagac
agacagacagataataaatcaggttattaaaacagaagggaaagttttgg
gatgaagcagtagagtagtaggaagcaggaatggaacataaaatgctaat
ggatggtgaacatgcccaaatacatagcataccccagtatgaaggcctta
agtcatgtcatataaggaatatgtgataataaaaatgttactaaaaggaa
tgctgcaactttccctctttctctaggaggcattttgaatagttttatct
attacttttctgtcactaagacacaaactgtgcaattccatcataaatga
caaacagaacagacaaactaaccaaacaaatgaaaacaaaatttgtaaga
gagatgagcttccttatatagcaaagatgtcatcactcttagttgctact
ttttctacatgtcattatgagttcatgaataatacaaatattgaggtggc
tttattccatcattgaactttttttttttttttttgttttttgaaccaga
gttcctcgtgtgaaccctggaactcacttgtagatcaggctgccttgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_61720681_61721252
seq2: B6Ng01-054C09.b_46_617 (reverse)

seq1  TCTGGACAGATACCAGGTACCAAAGTTGAATCAGGATCAAGTTGACCATC  50
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TCTGGACAGATACCAGGTACCAAAGCTGAATCAGGATCAAGTTGACCATC  50

seq1  TAAACAGTCCCATATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTC  100
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAAACAGTCCCATATCCCCTAAAGAAATAGAAGCAGTTATTAATAGTCTC  100

seq1  CCAACCAAAAAAAGCCCAGGACCAGATGGGTTTAGTGCAGAGTTCTATCA  150
      ||| |||||||||||||||||||||| |||||||||||||||||||||||
seq2  CCAGCCAAAAAAAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCA  150

seq1  GACCTTCAAAGAAGATCTAATTCCAATTCTGCACAAACTATTTCACAAAA  200
      ||||||||| ||||||||||||||| ||||||||||||||||||||||||
seq2  GACCTTCAAGGAAGATCTAATTCCAGTTCTGCACAAACTATTTCACAAAA  200

seq1  TAGAAGTAGAAGGTACTCTACCCAACTCATTTTATGAAGCCACTATTACT  250
      ||||| ||||||||||||||||||||||| ||| ||||||||||||||||
seq2  TAGAAATAGAAGGTACTCTACCCAACTCACTTTTTGAAGCCACTATTACT  250

seq1  CTGATACCTAAACCACAGAAAGATCCAACAAAGATAGAGAACTTCAGACC  300
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTGATACCTAAACCACAGAAAGACCCAACAAAGATAGAGAACTTCAGACC  300

seq1  AATTTCTCTTATGAATATCGATGCAAAAATCCTCAATAAAATTCTCGCTA  350
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AATTTCTCTTATGAATATCGATGCAAAAATACTCAATAAAATTCTCGCTA  350

seq1  ACCGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGT  400
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATCCAAGAACACATTAAAGCAATCATCCATCCTGACCAAGTAGGT  400

seq1  TTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCAATGT  450

seq1  AATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCATTATATAAACAAACTCAAAGACAAAAACCACATGATCATCTCGT  500

seq1  TAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGATAAAA  550
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TAGATGCAGAAAAAGCATTTGACAAGATCCAACATCCATTCATGATAAAA  550

seq1  GTTTTGGAAAGATCAGGAATTC  572
      || |||||||||||||||||||
seq2  GTCTTGGAAAGATCAGGAATTC  572

seq1: chr1_5885804_5886964
seq2: B6Ng01-054C09.g_66_1214

seq1  GAATTCAGATAGTAGATAGATGATAGAGATTGGTAGTATGATGGTTCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATAGTAGATAGATGATAGAGATTGGTAGTATGATGGTTCTTC  50

seq1  TTGGTTGACAACTTGACTAGATCTGGAATCAACTAAAACCCAATAGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGACAACTTGACTAGATCTGGAATCAACTAAAACCCAATAGTAGA  100

seq1  GAGCACACCTGTAAGGGACTTTTGCACAATTTTAAGTAAGAAGATCTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACACCTGTAAGGGACTTTTGCACAATTTTAAGTAAGAAGATCTACT  150

seq1  TCTGATCTGGAACTTTCAGATATGAAGACATACTTTTTATCTGGATCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATCTGGAACTTTCAGATATGAAGACATACTTTTTATCTGGATCTTT  200

seq1  TGAACTGAGAAAAGACATGTCTTTAATTGAGACCATTTGAGCTGGGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTGAGAAAAGACATGTCTTTAATTGAGACCATTTGAGCTGGGAAAA  250

seq1  CCCACCTCTAATCTGGGCCACACCTTCCGCTGGAAGCCTATATAAAGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTCTAATCTGGGCCACACCTTCCGCTGGAAGCCTATATAAAGACA  300

seq1  CAAAAGAAGGAAGTGTTTGATCTTTCCCTGATTGCACTTGCCTTACTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAAGGAAGTGTTTGATCTTTCCCTGATTGCACTTGCCTTACTAGC  350

seq1  ACATCCATTACTTCTTGGGTATTAGAGCCTAATTTATTGGGATTCCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCATTACTTCTTGGGTATTAGAGCCTAATTTATTGGGATTCCAGTG  400

seq1  TATACTGAAAACCAGCTGAGACATCCAGCTTCATGGACCAAGAAACTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGAAAACCAGCTGAGACATCCAGCTTCATGGACCAAGAAACTCCT  450

seq1  GTAGTCCTGGACATTTCATTCATAGTCTGCTATTGTTGGATCAACTGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCCTGGACATTTCATTCATAGTCTGCTATTGTTGGATCAACTGGAC  500

seq1  TGCAGACTGTAAGTCATTTTAATAAATTTCTTTCCACATAGATACTAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGACTGTAAGTCATTTTAATAAATTTCTTTCCACATAGATACTAGAT  550

seq1  AGATAGATAGATAGATAGATAGAGACAGACAGACAGACAGACAGACAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATAGATAGATAGATAGAGACAGACAGACAGACAGACAGACAGAC  600

seq1  AGACAGACAGATAATAAATCAGGTTATTAAAACAGAAGGGAAAGTTTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGACAGATAATAAATCAGGTTATTAAAACAGAAGGGAAAGTTTTGG  650

seq1  GATGAAGCAGTAGAGTAGTAGGAAGCAGGAATGGAACATAAAATGCTAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGCAGTAGAGTAGTAGGAAGCAGGAATGGAACATAAAATGCTAAT  700

seq1  GGATGGTGAACATGCCCAAATACATAGCATACCCCAGTATGAAGGCCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGTGAACATGCCCAAATACATAGCATACCCCAGTATGAAGGCCTTA  750

seq1  AGTCATGTCATATAAGGAATATGTGATAATAAAAATGTTACTAAAAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATGTCATATAAGGAATATGTGATAATAAAAATGTTACTAAAAGGAA  800

seq1  TGCTGCAACTTTCCCTCTTTCTCTAGGAGGCATTTTGAATAGTTTTATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAACTTTCCCTCTTTCTCTAGGAGGCATTTTGAATAGTTTTATCT  850

seq1  ATTACTTTTCTGTCACTAAGACACAAACTGTGCAATTCCATCATAAAATG  900
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATTACTTTTCTGTCACTAAGACACAAACTGTGCAATTCCATCAT-AAATG  899

seq1  ACAAAACAGAACAGAACAAAACTAACCAAACAAATGAAAAACAAAAATTT  950
      || ||||||||||||   ||||||||||||||||||||||   |||||||
seq2  AC-AAACAGAACAGA--CAAACTAACCAAACAAATGAAAA--CAAAATTT  944

seq1  GTAAGAGAGATGAAGCTTCCTTATATAGCAAAGATGTCATCACTCTTAGT  1000
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGAGATG-AGCTTCCTTATATAGCAAAGATGTCATCACTCTTAGT  993

seq1  TGCTACTTTTTCTACATGTCATTATGAGTTCATGAATAATAACAAATATT  1050
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGCTACTTTTTCTACATGTCATTATGAGTTCATGAATAAT-ACAAATATT  1042

seq1  GGAGTTGCTTTATCTCATCATTGAACTTTTTTTTTTTTTTTTTTGGTTTT  1100
      |  || |||||||  ||||||||||||||||||||||||||||  |||||
seq2  GAGGTGGCTTTATTCCATCATTGAACTTTTTTTTTTTTTTTTT--GTTTT  1090

seq1  TTGAGACAGAGTTTCTCTGTGT-AGCCCTGGAACTCACTCTGTAGATCAG  1149
      ||||  ||||||| ||| |||| | |||||||||||||| ||||||||||
seq2  TTGAACCAGAGTTCCTC-GTGTGAACCCTGGAACTCACT-TGTAGATCAG  1138

seq1  GCTGGCCTTGAA  1161
      ||| ||||||||
seq2  GCT-GCCTTGAA  1149