BAC Information

Click to search

BAC

Clone NameB6Ng01-054C17
Chromosome1 (Build37)
Map Location 163,406,696 - 163,527,566
singlet/doubletdoublet
Overlap geneTnfsf18, EG435650
Upstream geneRabgap1l, Gpr52, EG620750, Rc3h1, Serpinc1, Zbtb37, Gas5, Dars2, Cenpl, Klhl20, Ankrd45, 4930469G21Rik, EG665117, EG640200, EG620839, Prdx6, Tnfsf4
Downstream geneLOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc, Dnm3, LOC100039703, Dnm3os, 5630401D24Rik, Vamp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054C17.bB6Ng01-054C17.g
ACCDH876994DH876995
length1,0841,064
definitionDH876994|Mus musculus domesticus DNA, BAC clone: B6Ng01-054C17, 5' end.DH876995|Mus musculus domesticus DNA, BAC clone: B6Ng01-054C17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(163,406,696 - 163,407,796)(163,526,482 - 163,527,566)
sequence
gaattctccacattgatttccatagtggcagctactaacagctttctagt
tggatttcaacaacaacacaaaagaaatgatgcctagtacttgagaccta
ggcaactagtcagagctagtgaagtcatggttactggagaggctattcat
ttacagaaagaggaatgtagagagaggccgaggatttgtacaaagtgaaa
atttgatattcatctcaaagttccttgattcatcttgctgccaggcagtg
tggtcttacactctttctaaatttccttcatgaagtagcaagtctccaag
ctcccagtcctttttagctttctttggatactgtgagaagcatattgtta
agcttagctgatcgaagaaggctgcctccatttcaagagagtactgttta
gtagccctccaggtaagttttgtatttctagttcctagaatgtaggcttc
ttttcttctgagtttcacctctctacaaaatgtcaacttctttccaaagc
ctgccactccatacgattggccaattcttactactgcagtgtacctttct
gcagaaatcaagttggtcttacagagacattgggtcatttggccatctct
tatgatgctagccacatacctaacaacagtaatcctgccctctgaatgtt
aactcctctacacaatttgacagtcaggaggattgtgtggctagccaaga
agtatttagcaagcacacatttcaaactccacaatggtgtgggaagttta
tgtggcaattgaggaagtataactcataggaccaccatttccaggaaaag
tttttttgccgtgaatgcctggtaaattggatgagcaattgagcagacac
actgtcccttggccaaaaatttcaaaatattttctttggcaaacattcac
ctcatccattacccacttatgacagcgcccttgtgtgaagctcctatgct
gatgtcttaagtaaaacatgtgtgttcctcactacattgtttagggtgat
tataagcacgtgtagtgcattcacttatatcccagattaagagaggtgga
aaacagaaatattgaagaaaagagcacagccagg
gaattctttggcctttgtggtttcttcttggcaaaaaaaaaaaaaaaaaa
aaaaaaaaaaaggctgcgaactttcctctagtactagcaaagcttagatg
agctaatggtcctgaggcggtacgtgtgttcttcatatccaagtattcag
tcaacagcatctgtagcacgtcctggatcttcacccacacttcggccatg
tcatataatttgatctcttcctgctgtgttagctgggtcccaacagagtc
ctgaaggaccacagagtttgcagtggctacagcgttaaacttagcaaaca
acagttccagcagttctggaagtagcaatggctgttgtcaattctgtata
gtgctgaatgaccagttcatctaggtcacggtcatacttctcataggcat
cttcaaggcgacctttctcattttctcagtcttcagcgtcatcactggta
gacagggtcctggtcaccgagatgaggagtcccgtagggtctttgctcta
gctgactgtgcttctgttattacccaccagctgcttctgctgccatcttg
atacgggagagagagccatggggtgaacatatcgaaccacagaaagtacc
ttaaaatatagtaaaaagggaaatttaaaagtctatctgtggaggaatgg
agggaatttaccatgtgtgaactttcctggagtggaaagtgctcttgagt
caatgagtgaatggcaagtgagtttgaaggaccttatggttctctaccat
aggcactgtaaagttaggccacacaatttgttttaaatagttcctcagca
atatattagcctgtgcttactatgaatttactactgtttaaactttaact
ttttaataaactttaataaaacacaaatatgttagacatctatacaaaaa
aaaaaaaacgcaagctgtagtttgcgcgcacatggtgtgggtaagcagag
catgctttgtgtgaaatgaccctgcacccagctactgagagagctctgaa
acaagtcagcaaaagtcagtctcattattgtctgcatcagtcagtactta
tcaagtgtgagaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_163406696_163407796
seq2: B6Ng01-054C17.b_45_1128

seq1  GAATTCTCCACATTGATTTCCATAGTGGCAGCTACTAACAGCTTTCTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCACATTGATTTCCATAGTGGCAGCTACTAACAGCTTTCTAGT  50

seq1  TGGATTTCAACAACAACACAAAAGAAATGATGCCTAGTACTTGAGACCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTTCAACAACAACACAAAAGAAATGATGCCTAGTACTTGAGACCTA  100

seq1  GGCAACTAGTCAGAGCTAGTGAAGTCATGGTTACTGGAGAGGCTATTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACTAGTCAGAGCTAGTGAAGTCATGGTTACTGGAGAGGCTATTCAT  150

seq1  TTACAGAAAGAGGAATGTAGAGAGAGGCCGAGGATTTGTACAAAGTGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAAAGAGGAATGTAGAGAGAGGCCGAGGATTTGTACAAAGTGAAA  200

seq1  ATTTGATATTCATCTCAAAGTTCCTTGATTCATCTTGCTGCCAGGCAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATATTCATCTCAAAGTTCCTTGATTCATCTTGCTGCCAGGCAGTG  250

seq1  TGGTCTTACACTCTTTCTAAATTTCCTTCATGAAGTAGCAAGTCTCCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTACACTCTTTCTAAATTTCCTTCATGAAGTAGCAAGTCTCCAAG  300

seq1  CTCCCAGTCCTTTTTAGCTTTCTTTGGATACTGTGAGAAGCATATTGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGTCCTTTTTAGCTTTCTTTGGATACTGTGAGAAGCATATTGTTA  350

seq1  AGCTTAGCTGATCGAAGAAGGCTGCCTCCATTTCAAGAGAGTACTGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGCTGATCGAAGAAGGCTGCCTCCATTTCAAGAGAGTACTGTTTA  400

seq1  GTAGCCCTCCAGGTAAGTTTTGTATTTCTAGTTCCTAGAATGTAGGCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCCCTCCAGGTAAGTTTTGTATTTCTAGTTCCTAGAATGTAGGCTTC  450

seq1  TTTTCTTCTGAGTTTCACCTCTCTACAAAATGTCAACTTCTTTCCAAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCTGAGTTTCACCTCTCTACAAAATGTCAACTTCTTTCCAAAGC  500

seq1  CTGCCACTCCATACGATTGGCCAATTCTTACTACTGCAGTGTACCTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACTCCATACGATTGGCCAATTCTTACTACTGCAGTGTACCTTTCT  550

seq1  GCAGAAATCAAGTTGGTCTTACAGAGACATTGGGTCATTTGGCCATCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAATCAAGTTGGTCTTACAGAGACATTGGGTCATTTGGCCATCTCT  600

seq1  TATGATGCTAGCCACATACCTAACAACAGTAATCCTGCCCTCTGAATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGCTAGCCACATACCTAACAACAGTAATCCTGCCCTCTGAATGTT  650

seq1  AACTCCTCTACACAATTTGACAGTCAGGAGGATTGTGTGGCTAGCCAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTCTACACAATTTGACAGTCAGGAGGATTGTGTGGCTAGCCAAGA  700

seq1  AGTATTTAGCAAGCACACATTTCAAACTCCACAATGGTGTGGGAAGTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTAGCAAGCACACATTTCAAACTCCACAATGGTGTGGGAAGTTTA  750

seq1  TGTGGCAATTGAGGAAGTATAACTCATAGGACCACCATTTCCAGGAAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAATTGAGGAAGTATAACTCATAGGACCACCATTTCCAGGAAAAG  800

seq1  TTTTTTTGCCGTGAATGCCTGGTAAATTGGATGAGCAATTGAGCAGACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGCCGTGAATGCCTGGTAAATTGGATGAGCAATTGAGCAGACAC  850

seq1  ACTGTCCCTTGGCCAAAAAATTTCAAAAATATTTTCTTTGGCAAACATTC  900
      |||||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  ACTGTCCCTTGGCC-AAAAATTTC-AAAATATTTTCTTTGGCAAACATTC  898

seq1  ACCTCATCCATTACCCACTTATGACAGCGCCCTTGTGTGAAGGCTCCTAT  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACCTCATCCATTACCCACTTATGACAGCGCCCTTGTGTGAA-GCTCCTAT  947

seq1  GCTGATGTCTTAAGTAAAACATGTGGTGTTCCTCACTACATTGTCTTAGG  1000
      |||||||||||||||||||||||| ||||||||||||||||||| ||| |
seq2  GCTGATGTCTTAAGTAAAACATGT-GTGTTCCTCACTACATTGT-TTA-G  994

seq1  GGTGATTATAAGGCACGGTGGTAGTGCATTCAACTTATATCCCAAGGATT  1050
      ||||||||||| |||||   ||||||||||| ||||||||||||  ||||
seq2  GGTGATTATAA-GCACG--TGTAGTGCATTC-ACTTATATCCCA--GATT  1038

seq1  ACAGAGAGGGTGGAGAGCAGAAATATTGAAGAAAAGGAGCAACGAGCCAG  1100
      | ||||| |||||| | |||||||||||||||||| |||||   ||||||
seq2  A-AGAGA-GGTGGAAAACAGAAATATTGAAGAAAA-GAGCA--CAGCCAG  1083

seq1  G  1101
      |
seq2  G  1084

seq1: chr1_163526482_163527566
seq2: B6Ng01-054C17.g_67_1130 (reverse)

seq1  GTTCTCACCACTATGATAAAGTACCTGACCTGATGCAGACAATTAAAATG  50
      ||||||| |||| |||| ||||| |||| ||||||||||||||   ||||
seq2  GTTCTCA-CACT-TGAT-AAGTA-CTGA-CTGATGCAGACAAT---AATG  42

seq1  AAGACTGACTTTTGCTGACTGTGGTTTCAGAGGCTTCTC-CTCAGTAGGC  99
       ||||||||||||||||||  | |||||||||    ||| ||||||| ||
seq2  -AGACTGACTTTTGCTGAC--TTGTTTCAGAG----CTCTCTCAGTA-GC  84

seq1  TGGGTGCAGGGTCCATTTCAACACAAAGCATTGCTTCTGCTTACCCACAC  149
      |||||||||||| |||||| |||||||||| ||| |||||||||||||||
seq2  TGGGTGCAGGGT-CATTTC-ACACAAAGCA-TGC-TCTGCTTACCCACAC  130

seq1  CATGTGCGCGCAAACTACAGCCTTGCCTTTTTTTTTTTTTTGTATAGATG  199
      |||||||||||||||||||| |||| | ||||||||||||||||||||||
seq2  CATGTGCGCGCAAACTACAG-CTTG-CGTTTTTTTTTTTTTGTATAGATG  178

seq1  TCTAACATATTTGTGTTTTATTAAAGTTTATTAAAAAGTTAAAGTTTAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACATATTTGTGTTTTATTAAAGTTTATTAAAAAGTTAAAGTTTAAA  228

seq1  CAGTAGTAAATTCATAGTAAGCACAGGCTAATATATTGCTGAGGAACTAT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTAAATTCATAGTAAGCACAGGCTAATATATTGCTGAGGAACTAT  278

seq1  TTAAAACAAATTGTGTGGCCTAACTTTACAGTGCCTATGGTAGAGAACCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACAAATTGTGTGGCCTAACTTTACAGTGCCTATGGTAGAGAACCA  328

seq1  TAAGGTCCTTCAAACTCACTTGCCATTCACTCATTGACTCAAGAGCACTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTCCTTCAAACTCACTTGCCATTCACTCATTGACTCAAGAGCACTT  378

seq1  TCCACTCCAGGAAAGTTCACACATGGTAAATTCCCTCCATTCCTCCACAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCCAGGAAAGTTCACACATGGTAAATTCCCTCCATTCCTCCACAG  428

seq1  ATAGACTTTTAAATTTCCCTTTTTACTATATTTTAAGGTACTTTCTGTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTTTTAAATTTCCCTTTTTACTATATTTTAAGGTACTTTCTGTGG  478

seq1  TTCGATATGTTCACCCCATGGCTCTCTCTCCCGTATCAAGATGGCAGCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGATATGTTCACCCCATGGCTCTCTCTCCCGTATCAAGATGGCAGCAG  528

seq1  AAGCAGCTGGTGGGTAATAACAGAAGCACAGTCAGCTAGAGCAAAGACCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCTGGTGGGTAATAACAGAAGCACAGTCAGCTAGAGCAAAGACCC  578

seq1  TACGGGACTCCTCATCTCGGTGACCAGGACCCTGTCTACCAGTGATGACG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGGACTCCTCATCTCGGTGACCAGGACCCTGTCTACCAGTGATGACG  628

seq1  CTGAAGACTGAGAAAATGAGAAAGGTCGCCTTGAAGATGCCTATGAGAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGACTGAGAAAATGAGAAAGGTCGCCTTGAAGATGCCTATGAGAAG  678

seq1  TATGACCGTGACCTAGATGAACTGGTCATTCAGCACTATACAGAATTGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACCGTGACCTAGATGAACTGGTCATTCAGCACTATACAGAATTGAC  728

seq1  AACAGCCATTGCTACTTCCAGAACTGCTGGAACTGTTGTTTGCTAAGTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCATTGCTACTTCCAGAACTGCTGGAACTGTTGTTTGCTAAGTTT  778

seq1  AACGCTGTAGCCACTGCAAACTCTGTGGTCCTTCAGGACTCTGTTGGGAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCTGTAGCCACTGCAAACTCTGTGGTCCTTCAGGACTCTGTTGGGAC  828

seq1  CCAGCTAACACAGCAGGAAGAGATCAAATTATATGACATGGCCGAAGTGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTAACACAGCAGGAAGAGATCAAATTATATGACATGGCCGAAGTGT  878

seq1  GGGTGAAGATCCAGGACGTGCTACAGATGCTGTTGACTGAATACTTGGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAAGATCCAGGACGTGCTACAGATGCTGTTGACTGAATACTTGGAT  928

seq1  ATGAAGAACACACGTACCGCCTCAGGACCATTAGCTCATCTAAGCTTTGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAACACACGTACCGCCTCAGGACCATTAGCTCATCTAAGCTTTGC  978

seq1  TAGTACTAGAGGAAAGTTCGCAGCCTTTTTTTTTTTTTTTTTTTTTTTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTAGAGGAAAGTTCGCAGCCTTTTTTTTTTTTTTTTTTTTTTTTT  1028

seq1  TTTTGCCAAGAAGAAACCACAAAGGCCAAAGAATTC  1085
      ||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCAAGAAGAAACCACAAAGGCCAAAGAATTC  1064