BAC Information

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BAC

Clone NameB6Ng01-054E19
Chromosome1 (Build37)2 (Build37)
Map Location 174,507,059 - 174,508,0119,493,954 - 9,494,112
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p, Atp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916
Downstream geneSlamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a, Olfr1403, Darc, Cadm3, Aim2, EG240921, BC094916, LOC623121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054E19.bB6Ng01-054E19.g
ACCDH877080DH877081
length947613
definitionDH877080|Mus musculus domesticus DNA, BAC clone: B6Ng01-054E19, 5' end.DH877081|Mus musculus domesticus DNA, BAC clone: B6Ng01-054E19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(174,507,059 - 174,508,011)(9,493,954 - 9,494,112)
sequence
gaattcattacaaattacggcaagaatggatgagtaagcagtgagatgga
agggtcagcagaaagggtgggaggggccagcggaagggtgggaggggcca
gtggaagggtgggaggggccagtggaggggttcccctatggagtcggaaa
gcagccatgctttgtggaggaagatttatgagctttccttcttctgccat
ttctctcagcacgttgcttgggggaaatatcagcactgtggaggagaaag
caatggaagtagttacaccattaccaagaaacacaaaccagcaatcacac
aaacaagtgaataatacacacggtgactgaaactgtcgtgtttcttagaa
tgtctaagaataaaagagaaacgctggcattagtcaagcttcttctggtc
tatgcaaaagcaacaacggcaaaaacataaaaacaaacctctttagcaaa
tagagaatatatcaaaaatatagcaaatacacattttatcttaaagttgt
ggtttgctcagacatcccccccataaaaaatgttgactacacttggagtc
tccatggaattattctgttatgcgttctcttccccagttgctcactaaaa
attcaaaatcagtggtgttacatcaacttagctgtcaccaaggactttcc
ttctgggacatcggaagagtggtttgtgacatcttgtcggaagtaatagt
tggtttaacaaataagggttgtttttttaaagcttgaacaggaatcttta
taacaggagatgcatctgtctgctctttcagaagctttcctgaacatctg
ctgcacagctgtacagcaaagacccatcagttactaaagcatgccacaac
ctaccttcaaagggcttctgatctcttgtcaacagcagtagcagtaggga
aggaacagcaataaggcagaggttttgcctggaataactaagcagga
gaattctgtgctaaaaccatctagccctgcttgggttttgtttttttgtt
ttgttttttttttctgtttgggagactttcaatggttttacttcactaag
ggttataggtctatttaggttgtttttctgatcatgatttaactttggcc
agtggtatttattgaggaaattgtccatttcttttagattttctggtttg
gtggagtacaggttttttaaatgtgtccttatgattctctggacttcctc
ctgttgttatgtttccctttcatttctaactttgttaatatgaatatagg
tttgtgactcttactgatttttgaaatctttgtttcattgattctttgta
tttttgttgttgtttgcttatttctattttattgatgtcagcctcgagtt
tgattatttcttgccactcactcctttggtatataacttctttctttctc
tctttctttccttcctcccttcctctttcttcctttcttcctttcttcct
ttcttccttccttccttccttccttcctttctttctttctttctttcttt
ctttctttctttctttctttctttctttctttctttctttctttctttcc
tcctctctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_174507059_174508011
seq2: B6Ng01-054E19.b_43_989 (reverse)

seq1  TCCTGC-TAGTTATTCCCAGGCAAAACCTCTGCCTTACTGCCTGTTCCTT  49
      |||||| |||||||| ||||||||||||||||||||| || |||||||||
seq2  TCCTGCTTAGTTATT-CCAGGCAAAACCTCTGCCTTATTG-CTGTTCCTT  48

seq1  CCCCTACTGCTACTGCTGTTGACAAGGAGATCAGAAGCCCTTTGAAGGTA  99
       |||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  -CCCTACTGCTACTGCTGTTGACAA-GAGATCAGAAGCCCTTTGAAGGTA  96

seq1  GGGTTGTGGCATGCTTTAGTAACTGATGGGTCTTTGCTGTACAGCTGTGC  149
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GGTTGTGGCATGCTTTAGTAACTGATGGGTCTTTGCTGTACAGCTGTGC  145

seq1  AGCAGATGTTCAGGAAAGCTTCCTGAAAGAGCAGACAGATGCATCTCCTG  199
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGCAGATGTTCAGGAAAGCTT-CTGAAAGAGCAGACAGATGCATCTCCTG  194

seq1  TTATAAAGATTCCTGTTCAAGCTTTAAAAAAAACAACCCTTATTTGTTAA  249
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTATAAAGATTCCTGTTCAAGCTTT-AAAAAAACAACCCTTATTTGTTAA  243

seq1  ACCAACTATTACTTCCGACAAGATGTCACAAACCACTCTTCCGATGTCCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACTATTACTTCCGACAAGATGTCACAAACCACTCTTCCGATGTCCC  293

seq1  AGAAGGAAAGTCCTTGGTGACAGCTAAGTTGATGTAACACCACTGATTTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAAAGTCCTTGGTGACAGCTAAGTTGATGTAACACCACTGATTTT  343

seq1  GAATTTTTAGTGAGCAACTGGGGAAGAGAACGCATAACAGAATAATTCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTTAGTGAGCAACTGGGGAAGAGAACGCATAACAGAATAATTCCA  393

seq1  TGGAGACTCCAAGTGTAGTCAACATTTTTTATGGGGGGGATGTCTGAGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACTCCAAGTGTAGTCAACATTTTTTATGGGGGGGATGTCTGAGCA  443

seq1  AACCACAACTTTAAGATAAAATGTGTATTTGCTATATTTTTGATATATTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAACTTTAAGATAAAATGTGTATTTGCTATATTTTTGATATATTC  493

seq1  TCTATTTGCTAAAGAGGTTTGTTTTTATGTTTTTGCCGTTGTTGCTTTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTGCTAAAGAGGTTTGTTTTTATGTTTTTGCCGTTGTTGCTTTTG  543

seq1  CATAGACCAGAAGAAGCTTGACTAATGCCAGCGTTTCTCTTTTATTCTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGACCAGAAGAAGCTTGACTAATGCCAGCGTTTCTCTTTTATTCTTA  593

seq1  GACATTCTAAGAAACACGACAGTTTCAGTCACCGTGTGTATTATTCACTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCTAAGAAACACGACAGTTTCAGTCACCGTGTGTATTATTCACTT  643

seq1  GTTTGTGTGATTGCTGGTTTGTGTTTCTTGGTAATGGTGTAACTACTTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGTGATTGCTGGTTTGTGTTTCTTGGTAATGGTGTAACTACTTCC  693

seq1  ATTGCTTTCTCCTCCACAGTGCTGATATTTCCCCCAAGCAACGTGCTGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTTCTCCTCCACAGTGCTGATATTTCCCCCAAGCAACGTGCTGAG  743

seq1  AGAAATGGCAGAAGAAGGAAAGCTCATAAATCTTCCTCCACAAAGCATGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGGCAGAAGAAGGAAAGCTCATAAATCTTCCTCCACAAAGCATGG  793

seq1  CTGCTTTCCGACTCCATAGGGGAACCCCTCCACTGGCCCCTCCCACCCTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTCCGACTCCATAGGGGAACCCCTCCACTGGCCCCTCCCACCCTT  843

seq1  CCACTGGCCCCTCCCACCCTTCCGCTGGCCCCTCCCACCCTTTCTGCTGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGCCCCTCCCACCCTTCCGCTGGCCCCTCCCACCCTTTCTGCTGA  893

seq1  CCCTTCCATCTCACTGCTTACTCATCCATTCTTGCCGTAATTTGTAATGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCATCTCACTGCTTACTCATCCATTCTTGCCGTAATTTGTAATGA  943

seq1  ATTC  953
      ||||
seq2  ATTC  947

seq1: chr2_9493954_9494112
seq2: B6Ng01-054E19.g_507_661 (reverse)

seq1  AAGATAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  50

seq1  GAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGAAAGGAAGA  100
      ||||||||||||||||||||||||||||||||||||||    ||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGG----AAGGAAGA  96

seq1  AAGGAAGAAAGGAAGAAAGGAGAAAAGA--AAGAAAGGCAGGACAGACAC  148
      |||||||||||||||||||||  |||||  |||  ||| |||| ||  | 
seq2  AAGGAAGAAAGGAAGAAAGGAAGAAAGAGGAAGGGAGGAAGGAAAG--AA  144

seq1  AGAGAGAAAGA  159
      |||||||||||
seq2  AGAGAGAAAGA  155