BAC Information

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BAC

Clone NameB6Ng01-055A19
Chromosome1 (Build37)
Map Location 43,493,677 - 43,621,759
singlet/doubletdoublet
Overlap geneNck2
Upstream gene2610017I09Rik, Pou3f3, Mrps9, Gpr45, LOC100041588, Tgfbrap1, AI597479, Fhl2, EG666642, EG666644, LOC100041644
Downstream gene1500015O10Rik, Uxs1, LOC666676, LOC100042303, EG666690, Tpp2, A530098C11Rik, EG666713, 1700029F09Rik, Kdelc1, Bivm, Ercc5, 4832428D23Rik, LOC435619, Txn-ps1, Gulp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055A19.bB6Ng01-055A19.g
ACCDH877620DH877621
length1,1371,067
definitionDH877620|Mus musculus domesticus DNA, BAC clone: B6Ng01-055A19, 5' end.DH877621|Mus musculus domesticus DNA, BAC clone: B6Ng01-055A19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,620,615 - 43,621,759)(43,493,677 - 43,494,747)
sequence
gaattcattattatgagcaccccaacatcccactccccaatctgagaacc
tgatttaatttcacacctttgcactgggctcagagtacttatagattccc
aattctgaccatctcttccactgttctcttccttaaatcttgcatctcag
caatttttatgtataggtatttttagaaaaacacctgaaagatgctcact
ggtgttttctacagagtcagatggtttctacagaggtacctgtttgaccc
agtttaaaaacctcaaaagtgcctctggactccccataaatttagcaggt
aacttgggaaaatatttctcttcctcactcaaaactgaatcatagaaaac
cacaaacatcaagaatgatctttaatgttcttttctccttcatctctgag
agcttactaagcattaaagtgatttattttctaagcatggtgactgtaag
gaaataaagaaagagggaactttgctgctgagatacttagtttttaatta
accttaaaatttatcatccactttggacaagaaatgttcttgaccaccca
catggacctgagcaagactctgcttactgcctcaagcatcagtgatctgc
actaatgttgttattccctgcatctcaaagagagggcaatctattggttt
cttatcaaaccctacatcccctccctccttttcatttgagaaatattttt
cccctttttacttcattaataccctttgtctgaagatgttcactgatccc
caaatgaagacccaatgcatgagaggtaaaatgggcactactgattaaca
tcttctgtgtgccaccttccctggctgccaatgcagcctctttttaagtc
aaaactgactgaaatgtttccatcaatgctggtcatacttgcttctttat
tccacataagggcctaaacataacccaacagaacaccaaacatgcatttc
actagtgcgaaaggaactcattttagtaaagaaaactagtctcaactaga
gaatacttcaaagtcccccctgcctataaaatgtagaagctatcaggctt
ctcagatcaccttcaacagactctgcagaagtcttaccctttcctgccca
ccccatagatttccccacacgaattttatcgtacaga
gaattctccaggggccccagctataattatatgagccctgagggaggatc
actgtccaacttattactctattgctgtgaagacatcccaggaccaaggc
agcttacaaaagaaagcagttaattgggggcttgcttaaagtttcagagg
gatagttcataatcgtcatgccaaggcaggaagcatggaagcaggcaagc
aggcatggtactggagtgatagccgagagttctattttgatcccagaatt
gcagatgggtataggactgggcatagcatgggcttttgaaacctcaaagc
ctaccccccagtgacacggacacacctcctctgaggaggccacacgtcct
tcctaactgggaaccaaacagtcaagaacaggagcttaggggggctattc
tcactcagaggactgaagtcacctttcctggctggaggaagggaaatgat
cagaaactcgaaccgtttgttgactctggagatgatggagtcacgttagc
caaggaatatagatgttcttcaactttgggtttcgagctcagtgatgatc
tggttagttcatatgtaaacatgctggtgtttacacttaacatttggctg
agtgtgtggtatatgcccataacccagacactcaggcagctgaggcagga
agatgatgagtttgagatcaatctaggctacagagccgtgtcttttgtct
ttcgtttgttgttaatttttaaagggcaacaacagcaaacagggaagaaa
aagttttttctagttgtcctttcttcctttccttctgagaattattaacg
tctgccttttggtgaggggtcagtgagacacttccgagacccaaggggat
catccctgcctcttaatcagttcaccgtgttagaatatcatacagaccac
gaatcactagataacaagcaatcttggctacatgaccccatggagggtca
tagagtaaggggactccaaaggaagagagcttctttgcatctggacagtg
ctgtctagccagagggcccaggaccatcacttattaaatacacagcttgt
tcttcaaacatggctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_43620615_43621759
seq2: B6Ng01-055A19.b_37_1173 (reverse)

seq1  TCTGTACGATAAAATATCGTGTTGGGGAAAATCTATTGGGGTGGGCAGGA  50
      ||||||||||||||| ||||||  ||| ||||||| ||||||||||||||
seq2  TCTGTACGATAAAAT-TCGTGT--GGGGAAATCTA-TGGGGTGGGCAGGA  46

seq1  AAGGGT-AGACTTCTGCAGAGTTCTGTTTGAAGGTGATCTTGAGAGCCCT  99
      |||||| |||||||||||||| |||| |||||||||||| |||||  |||
seq2  AAGGGTAAGACTTCTGCAGAG-TCTG-TTGAAGGTGATC-TGAGAAGCCT  93

seq1  GATAGCTTCTACATTTTTATAGGCAGGGGGGACTTTGAAGTTATTCTCTA  149
      ||||||||||||| |||||||||||||||||||||||||| |||||||||
seq2  GATAGCTTCTACA-TTTTATAGGCAGGGGGGACTTTGAAG-TATTCTCTA  141

seq1  GTTGAGAACTAGTTTTCTTTACTAAAATGAGTTCCTTTCGCACTAGTGAA  199
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAG-ACTAGTTTTCTTTACTAAAATGAGTTCCTTTCGCACTAGTGAA  190

seq1  ATGCATGTTTGGTGTTCTG-TGGGTTATGTTTAGGCCCTTATGTGGAATA  248
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATGCATGTTTGGTGTTCTGTTGGGTTATGTTTAGGCCCTTATGTGGAATA  240

seq1  AAG-AGCAAGTATGACCAGCATTGATGGAAACATTTCAGTCAGTTTTGAC  297
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGCAAGTATGACCAGCATTGATGGAAACATTTCAGTCAGTTTTGAC  290

seq1  TTAAAAAGAGGCTGCATTGGGCAGCCAGGGAAGGTGGCACACAGAAGATG  347
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTAAAAAGAGGCTGCATT-GGCAGCCAGGGAAGGTGGCACACAGAAGATG  339

seq1  TTAATCAGTAGTGCCCATTTTACCTCTCATGCATTGGGTCTTCATTTGGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAGTAGTGCCCATTTTACCTCTCATGCATTGGGTCTTCATTTGGG  389

seq1  GATCAGTGAACATCTTCAGACAAAGGGTATTAATGAAGTAAAAAGGGGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGTGAACATCTTCAGACAAAGGGTATTAATGAAGTAAAAAGGGGAA  439

seq1  AAATATTTCTCAAATGAAAAGGAGGGAGGGGATGTAGGGTTTGATAAGAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTCTCAAATGAAAAGGAGGGAGGGGATGTAGGGTTTGATAAGAA  489

seq1  ACCAATAGATTGCCCTCTCTTTGAGATGCAGGGAATAACAACATTAGTGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATAGATTGCCCTCTCTTTGAGATGCAGGGAATAACAACATTAGTGC  539

seq1  AGATCACTGATGCTTGAGGCAGTAAGCAGAGTCTTGCTCAGGTCCATGTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACTGATGCTTGAGGCAGTAAGCAGAGTCTTGCTCAGGTCCATGTG  589

seq1  GGTGGTCAAGAACATTTCTTGTCCAAAGTGGATGATAAATTTTAAGGTTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTCAAGAACATTTCTTGTCCAAAGTGGATGATAAATTTTAAGGTTA  639

seq1  ATTAAAAACTAAGTATCTCAGCAGCAAAGTTCCCTCTTTCTTTATTTCCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAACTAAGTATCTCAGCAGCAAAGTTCCCTCTTTCTTTATTTCCT  689

seq1  TACAGTCACCATGCTTAGAAAATAAATCACTTTAATGCTTAGTAAGCTCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTCACCATGCTTAGAAAATAAATCACTTTAATGCTTAGTAAGCTCT  739

seq1  CAGAGATGAAGGAGAAAAGAACATTAAAGATCATTCTTGATGTTTGTGGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATGAAGGAGAAAAGAACATTAAAGATCATTCTTGATGTTTGTGGT  789

seq1  TTTCTATGATTCAGTTTTGAGTGAGGAAGAGAAATATTTTCCCAAGTTAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATGATTCAGTTTTGAGTGAGGAAGAGAAATATTTTCCCAAGTTAC  839

seq1  CTGCTAAATTTATGGGGAGTCCAGAGGCACTTTTGAGGTTTTTAAACTGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAAATTTATGGGGAGTCCAGAGGCACTTTTGAGGTTTTTAAACTGG  889

seq1  GTCAAACAGGTACCTCTGTAGAAACCATCTGACTCTGTAGAAAACACCAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAACAGGTACCTCTGTAGAAACCATCTGACTCTGTAGAAAACACCAG  939

seq1  TGAGCATCTTTCAGGTGTTTTTCTAAAAATACCTATACATAAAAATTGCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCATCTTTCAGGTGTTTTTCTAAAAATACCTATACATAAAAATTGCT  989

seq1  GAGATGCAAGATTTAAGGAAGAGAACAGTGGAAGAGATGGTCAGAATTGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCAAGATTTAAGGAAGAGAACAGTGGAAGAGATGGTCAGAATTGG  1039

seq1  GAATCTATAAGTACTCTGAGCCCAGTGCAAAGGTGTGAAATTAAATCAGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTATAAGTACTCTGAGCCCAGTGCAAAGGTGTGAAATTAAATCAGG  1089

seq1  TTCTCAGATTGGGGAGTGGGATGTTGGGGTGCTCATAATAATGAATTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAGATTGGGGAGTGGGATGTTGGGGTGCTCATAATAATGAATTC  1137

seq1: chr1_43493677_43494747
seq2: B6Ng01-055A19.g_67_1133

seq1  GAATTCTCCAGGGGCCCCAGCTATAATTATATGAGCCCTGAGGGAGGATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGGGGCCCCAGCTATAATTATATGAGCCCTGAGGGAGGATC  50

seq1  ACTGTCCAACTTATTACTCTATTGCTGTGAAGACATCCCAGGACCAAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCAACTTATTACTCTATTGCTGTGAAGACATCCCAGGACCAAGGC  100

seq1  AGCTTACAAAAGAAAGCAGTTAATTGGGGGCTTGCTTAAAGTTTCAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTACAAAAGAAAGCAGTTAATTGGGGGCTTGCTTAAAGTTTCAGAGG  150

seq1  GATAGTTCATAATCGTCATGCCAAGGCAGGAAGCATGGAAGCAGGCAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTTCATAATCGTCATGCCAAGGCAGGAAGCATGGAAGCAGGCAAGC  200

seq1  AGGCATGGTACTGGAGTGATAGCCGAGAGTTCTATTTTGATCCCAGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGGTACTGGAGTGATAGCCGAGAGTTCTATTTTGATCCCAGAATT  250

seq1  GCAGATGGGTATAGGACTGGGCATAGCATGGGCTTTTGAAACCTCAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGGGTATAGGACTGGGCATAGCATGGGCTTTTGAAACCTCAAAGC  300

seq1  CTACCCCCCAGTGACACGGACACACCTCCTCTGAGGAGGCCACACGTCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCCCCAGTGACACGGACACACCTCCTCTGAGGAGGCCACACGTCCT  350

seq1  TCCTAACTGGGAACCAAACAGTCAAGAACAGGAGCTTAGGGGGGCTATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAACTGGGAACCAAACAGTCAAGAACAGGAGCTTAGGGGGGCTATTC  400

seq1  TCACTCAGAGGACTGAAGTCACCTTTCCTGGCTGGAGGAAGGGAAATGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCAGAGGACTGAAGTCACCTTTCCTGGCTGGAGGAAGGGAAATGAT  450

seq1  CAGAAACTCGAACCGTTTGTTGACTCTGGAGATGATGGAGTCACGTTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACTCGAACCGTTTGTTGACTCTGGAGATGATGGAGTCACGTTAGC  500

seq1  CAAGGAATATAGATGTTCTTCAACTTTGGGTTTCGAGCTCAGTGATGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAATATAGATGTTCTTCAACTTTGGGTTTCGAGCTCAGTGATGATC  550

seq1  TGGTTAGTTCATATGTAAACATGCTGGTGTTTACACTTAACATTTGGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAGTTCATATGTAAACATGCTGGTGTTTACACTTAACATTTGGCTG  600

seq1  AGTGTGTGGTATATGCCCATAACCCAGACACTCAGGCAGCTGAGGCAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTGGTATATGCCCATAACCCAGACACTCAGGCAGCTGAGGCAGGA  650

seq1  AGATGATGAGTTTGAGATCAATCTAGGCTACAGAGCCGTGTCTTTTGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATGAGTTTGAGATCAATCTAGGCTACAGAGCCGTGTCTTTTGTCT  700

seq1  TTCGTTTGTTGTTAATTTTTAAAGGGCAACAACAGCAAACAGGGAAGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTTTGTTGTTAATTTTTAAAGGGCAACAACAGCAAACAGGGAAGAAA  750

seq1  AAGTTTTTTCTAGTTGTCCTTTCTTCCTTTCCTTCTGAGAATTATTAACG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTTTCTAGTTGTCCTTTCTTCCTTTCCTTCTGAGAATTATTAACG  800

seq1  TCTGCCTTTTGGTGAGGGGTCAGTGAGACACTTCCGAGACCCAAGGGGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTTTGGTGAGGGGTCAGTGAGACACTTCCGAGACCCAAGGGGAT  850

seq1  CATCCCTGCCTCTTTAATCAGTTCACCGTGTTAGAATATCATACAGACCA  900
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CATCCCTGCCTC-TTAATCAGTTCACCGTGTTAGAATATCATACAGACCA  899

seq1  CGAATCACTAGATAACAAGGCAATCTTGGCTACATGACCCCATGGAGGTT  950
      |||||||||||||||||| ||||||||||||||||||||||||||||| |
seq2  CGAATCACTAGATAACAA-GCAATCTTGGCTACATGACCCCATGGAGGGT  948

seq1  CATAGAGTAAGGGGGACCCCAAAGGAAGAGAGC-TCTTTGCATCTTGGAC  999
      |||||||||| |||||| ||||||||||||||| |||||||||| |||||
seq2  CATAGAGTAA-GGGGACTCCAAAGGAAGAGAGCTTCTTTGCATC-TGGAC  996

seq1  AGTGCTGTCTAGCCAGAGGGCCCA-GACCATCACTTATTAAATTACACAG  1048
      |||||||||||||||||||||||| ||||||||||||||||| |||||| 
seq2  AGTGCTGTCTAGCCAGAGGGCCCAGGACCATCACTTATTAAA-TACACA-  1044

seq1  GCTTGTTCTTCAAACATGGCTCA  1071
      |||||||||||||||||||||||
seq2  GCTTGTTCTTCAAACATGGCTCA  1067