BAC Information

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BAC

Clone NameB6Ng01-055B03
Chromosome1 (Build37)
Map Location 196,015,099 - 196,115,979
singlet/doubletdoublet
Overlap genenone
Upstream geneTraf3ip3, Hsd11b1, G0s2, Lamb3, Camk1g, LOC667208
Downstream geneEG623172, Plxna2, Cd34, Cd46, Crry, Cr2, EG635956
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055B03.bB6Ng01-055B03.g
ACCDH877636DH877637
length9731,055
definitionDH877636|Mus musculus domesticus DNA, BAC clone: B6Ng01-055B03, 5' end.DH877637|Mus musculus domesticus DNA, BAC clone: B6Ng01-055B03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(196,115,008 - 196,115,979)(196,015,099 - 196,016,172)
sequence
gaattccatggatcttatgctgattccaacagaggggatgctgaggggtg
gacaccctgagaaggagtccaggttgaagactttatctgcttcttgcagc
tgcatcttttgtgagctgcattctctgactcgtcaataccatttcccatt
aaattaaatagcttattgactggtgtggcatgtggagatggggttgatgg
gattcacagaggctcctcacccctctcccctccctgcaacaatcacaggt
cactgctcagtaaatcagttggtaatggagtttgaactctcagaatcagc
tctgtgtaccctttttatttgtttttaatttgtatcaatggtaattctgt
ctgtttcaatttatgtggtggcacaggctgcagaacagaggaagtgcctt
tttttttttttccttttttaccccattagccacagaggggcaaacctgtt
ttgatgggcaggggctgtttcccttcagtcctcttgtctggacctcacca
ggtagcctctgtttcacaccacatatagagatgatctcagaatgggtttt
gcaagccattggtcattttttgctccagcagactgaatgtagtatgatgg
gaggggtactggaaggacaaccttgttctgtgccctccaggagcctaagg
tcacaaagcctggaaccttagctgattctagagtgatttgtccatgctct
tgttgtaagctacaccctctcctctgtccctgctctcttagctctttact
tgcaggtgggtaacatttccagtgcattagtgtccagaatgactgcaaag
tagacatagtttgttgcagcactctttatcttcccattggtcatccttct
ttgctctagtcttgtgagaaatgtgaaaatacagaaggaaaattaaaatg
catataagagtggttaaattgagatggagaaacagagatattagacttct
ccatgatggtgaatgcttgttag
gaattccaattattgaaattttcattaaaagctcacattttagttttata
tatgaaatatatgctaaccatgggatcatgaatatcatgatgatttctct
ttatttttctagaagattgatattttgagttttcacattcaattagtaag
ctatttagattccatgttgcacagcatagtagacatgactgaagcacatt
tgtgtttggctgttcaatcatttgggcaccatgttcggggagattatctt
ttcccattgttttggcagctttgttgaaaactagctgattgcatgtgcat
gtgtatatttacttaattgcttatttcaccgatgaatgtttgtgccaaac
caaattcaattattctagctttcattaacgttaaaattaagtttttctaa
attattttaaaagctattttggtccttttaaaagttactctgttaatttg
gatgtataccatttccatacgatttagacactctttttatttgttttcat
ttctaaaggaaaaaaatgcattctaccaattttgattaggattgcattga
aatcctaatccttggaaatgtacttgggtggggggcattgaattcttcaa
catgctgacccttgtgatcagtgaagatgcagtatcaatttattcagtaa
gtattgctggagaaatcttagaactgaaatggatagttattcacagagct
atatggagacataactttgctagtatcagatatccttctcctcctgacat
atgcctgatttccaatcttcttttgttctaattagatattttctttattt
acatttcaaatgttgtcccctttccccctctccaagccccctatctcctt
acctttcccctcaccgacccacccactcctgcttcctggtcctggcattt
ccctacacaggagcatcgagccttcacagactaaggcctttcctcccatg
atgactgacagcatcctttgctacatatgcagctgagcatgggtccttca
tgtgtactctttagtgtaattagtcctggactctggggtactgtagtcat
actgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_196115008_196115979
seq2: B6Ng01-055B03.b_44_1016 (reverse)

seq1  CTAAC-AGCCTTCACCAATCATGGAGAAGTCTAGTATCTCTGTTTCTCCA  49
      ||||| ||| |||||| |||||||||||||||| ||||||||||||||||
seq2  CTAACAAGCATTCACC-ATCATGGAGAAGTCTAATATCTCTGTTTCTCCA  49

seq1  TCTCAATTTAACCACTCTTATATGCATTTTAATTTTCCTTCTGTATTTTC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATTTAACCACTCTTATATGCATTTTAATTTTCCTTCTGTATTTTC  99

seq1  ACATTTCTCACAAGACTAGAGCAAAAGAGGATGACCAATGGG-AGATAAA  148
      |||||||||||||||||||||||||  ||||||||||||||| |||||||
seq2  ACATTTCTCACAAGACTAGAGCAAAGAAGGATGACCAATGGGAAGATAAA  149

seq1  GAGTGCTGCAACAAACTATGTCTACTTTGCAGTCATTCTGGACACTAATG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTGCAACAAACTATGTCTACTTTGCAGTCATTCTGGACACTAATG  199

seq1  CACTGGAAATGTTACCCACCTGCAAGTAAAGAGCTAAGAGAGCAGGGACA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGAAATGTTACCCACCTGCAAGTAAAGAGCTAAGAGAGCAGGGACA  249

seq1  GAGGAGAGGGTGTAGCTTACAACAAGAGCATGGACAAATCACTCTAGAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAGGGTGTAGCTTACAACAAGAGCATGGACAAATCACTCTAGAAT  299

seq1  CAGCTAAGGTTCCAGGCTTTGTGACCTTAGGCTCCTGGAGGGCACAGAAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAAGGTTCCAGGCTTTGTGACCTTAGGCTCCTGGAGGGCACAGAAC  349

seq1  AAGGTTGTCCTTCCAGTACCCCTCCCATCATACTACATTCAGTCTGCTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTGTCCTTCCAGTACCCCTCCCATCATACTACATTCAGTCTGCTGG  399

seq1  AGCAAAAAATGACCAATGGCTTGCAAAACCCATTCTGAGATCATCTCTAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAAAATGACCAATGGCTTGCAAAACCCATTCTGAGATCATCTCTAT  449

seq1  ATGTGGTGTGAAACAGAGGCTACCTGGTGAGGTCCAGACAAGAGGACTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGTGTGAAACAGAGGCTACCTGGTGAGGTCCAGACAAGAGGACTGA  499

seq1  AGGGAAACAGCCCCTGCCCATCAAAACAGGTTTGCCCCTCTGTGGCTAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAACAGCCCCTGCCCATCAAAACAGGTTTGCCCCTCTGTGGCTAAT  549

seq1  GGGGTAAAAAAGGAAAAAAAAAAAAAGGCACTTCCTCTGTTCTGCAGCCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAAAAAAGGAAAAAAAAAAAAAGGCACTTCCTCTGTTCTGCAGCCT  599

seq1  GTGCCACCACATAAATTGAAACAGACAGAATTACCATTGATACAAATTAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCACCACATAAATTGAAACAGACAGAATTACCATTGATACAAATTAA  649

seq1  AAACAAATAAAAAGGGTACACAGAGCTGATTCTGAGAGTTCAAACTCCAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATAAAAAGGGTACACAGAGCTGATTCTGAGAGTTCAAACTCCAT  699

seq1  TACCAACTGATTTACTGAGCAGTGACCTGTGATTGTTGCAGGGAGGGGAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACTGATTTACTGAGCAGTGACCTGTGATTGTTGCAGGGAGGGGAG  749

seq1  AGGGGTGAGGAGCCTCTGTGAATCCCATCAACCCCATCTCCACATGCCAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTGAGGAGCCTCTGTGAATCCCATCAACCCCATCTCCACATGCCAC  799

seq1  ACCAGTCAATAAGCTATTTAATTTAATGGGAAATGGTATTGACGAGTCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCAATAAGCTATTTAATTTAATGGGAAATGGTATTGACGAGTCAG  849

seq1  AGAATGCAGCTCACAAAAGATGCAGCTGCAAGAAGCAGATAAAGTCTTCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCAGCTCACAAAAGATGCAGCTGCAAGAAGCAGATAAAGTCTTCA  899

seq1  ACCTGGACTCCTTCTCAGGGTGTCCACCCCTCAGCATCCCCTCTGTTGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGACTCCTTCTCAGGGTGTCCACCCCTCAGCATCCCCTCTGTTGGA  949

seq1  ATCAGCATAAGATCCATGGAATTC  972
      ||||||||||||||||||||||||
seq2  ATCAGCATAAGATCCATGGAATTC  973

seq1: chr1_196015099_196016172
seq2: B6Ng01-055B03.g_65_1119

seq1  GAATTCCAATTATTGAAATTTTCATTAAAAGCTCACATTTTAGTTTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATTATTGAAATTTTCATTAAAAGCTCACATTTTAGTTTTATA  50

seq1  TATGAAATATATGCTAACCATGGGATCATGAATATCATGATGATTTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAATATATGCTAACCATGGGATCATGAATATCATGATGATTTCTCT  100

seq1  TTATTTTTCTAGAAGATTGATATTTTGAGTTTTCACATTCAATTAGTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTCTAGAAGATTGATATTTTGAGTTTTCACATTCAATTAGTAAG  150

seq1  CTATTTAGATTCCATGTTGCACAGCATAGTAGACATGACTGAAGCACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTAGATTCCATGTTGCACAGCATAGTAGACATGACTGAAGCACATT  200

seq1  TGTGTTTGGCTGTTCAATCATTTGGGCACCATGTTCGGGGAGATTATCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGGCTGTTCAATCATTTGGGCACCATGTTCGGGGAGATTATCTT  250

seq1  TTCCCATTGTTTTGGCAGCTTTGTTGAAAACTAGCTGATTGCATGTGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATTGTTTTGGCAGCTTTGTTGAAAACTAGCTGATTGCATGTGCAT  300

seq1  GTGTATATTTACTTAATTGCTTATTTCACCGATGAATGTTTGTGCCAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATATTTACTTAATTGCTTATTTCACCGATGAATGTTTGTGCCAAAC  350

seq1  CAAATTCAATTATTCTAGCTTTCATTAACGTTAAAATTAAGTTTTTCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCAATTATTCTAGCTTTCATTAACGTTAAAATTAAGTTTTTCTAA  400

seq1  ATTATTTTAAAAGCTATTTTGGTCCTTTTAAAAGTTACTCTGTTAATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTAAAAGCTATTTTGGTCCTTTTAAAAGTTACTCTGTTAATTTG  450

seq1  GATGTATACCATTTCCATACGATTTAGACACTCTTTTTATTTGTTTTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATACCATTTCCATACGATTTAGACACTCTTTTTATTTGTTTTCAT  500

seq1  TTCTAAAGGAAAAAAATGCATTCTACCAATTTTGATTAGGATTGCATTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAGGAAAAAAATGCATTCTACCAATTTTGATTAGGATTGCATTGA  550

seq1  AATCCTAATCCTTGGAAATGTACTTGGGTGGGGGGCATTGAATTCTTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTAATCCTTGGAAATGTACTTGGGTGGGGGGCATTGAATTCTTCAA  600

seq1  CATGCTGACCCTTGTGATCAGTGAAGATGCAGTATCAATTTATTCAGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTGACCCTTGTGATCAGTGAAGATGCAGTATCAATTTATTCAGTAA  650

seq1  GTATTGCTGGAGAAATCTTAGAACTGAAATGGATAGTTATTCACAGAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGCTGGAGAAATCTTAGAACTGAAATGGATAGTTATTCACAGAGCT  700

seq1  ATATGGAGACATAACTTTGCTAGTATCAGATATCCTTCTCCTCCTGACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGAGACATAACTTTGCTAGTATCAGATATCCTTCTCCTCCTGACAT  750

seq1  ATGCCTGATTTCCAATCTTCTTTTGTTCTAATTAGATATTTTCTTTATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGATTTCCAATCTTCTTTTGTTCTAATTAGATATTTTCTTTATTT  800

seq1  ACATTTCAAATGTTGTCCCCTTTCCCCCTCTCCAAGCCCCCTATCTCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCAAATGTTGTCCCCTTTCCCCCTCTCCAAGCCCCCTATCTCCTT  850

seq1  ACCTTTCCCCTCACCGACCCACCCACTCCTGCTTCCTGGTCCTGGCATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCCCCTCACCGACCCACCCACTCCTGCTTCCTGGTCCTGGCATTT  900

seq1  CCCTACACAGGGGCATCGAGCCTTCACAGAACTAAGGGCCTTTCCTCCCA  950
      ||||||||||| ||||||||||||||||| ||||| ||||||||||||| 
seq2  CCCTACACAGGAGCATCGAGCCTTCACAG-ACTAA-GGCCTTTCCTCCC-  947

seq1  ATGATGACTGACAAGGCCATCCTTTGCTACATATGCAGCTGGAGCCATGG  1000
      |||||||||||||    ||||||||||||||||||||||| ||| |||||
seq2  ATGATGACTGACA---GCATCCTTTGCTACATATGCAGCT-GAG-CATGG  992

seq1  GTCCCTTCATGTGTACTCTTTAGTTGGTGATTTAGTCCCTGGGAGCTCTG  1050
      || |||||||||||||||||||||  || | ||||| |||||   |||| 
seq2  GT-CCTTCATGTGTACTCTTTAGT--GT-AATTAGT-CCTGG--ACTCT-  1034

seq1  GGGGTACTGGTTAGTTCATACTGT  1074
      |||||||||  ||| |||||||||
seq2  GGGGTACTG--TAG-TCATACTGT  1055