BAC Information

Click to search

BAC

Clone NameB6Ng01-055I16
Chromosome1 (Build37)
Map Location 51,539,415 - 51,674,344
singlet/doubletdoublet
Overlap genenone
Upstream geneTmeff2, Sdpr, LOC383504, Obfc2a
Downstream geneMyo1b, EG667010, LOC667014, Stat4, LOC100042634, Stat1, Gls, LOC546735, Nab1, LOC546736, Gm553, LOC100042094, EG433305
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055I16.bB6Ng01-055I16.g
ACCDH877958DH877959
length1,1071,164
definitionDH877958|Mus musculus domesticus DNA, BAC clone: B6Ng01-055I16, 5' end.DH877959|Mus musculus domesticus DNA, BAC clone: B6Ng01-055I16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,539,415 - 51,540,552)(51,673,166 - 51,674,344)
sequence
gaattcagtagttcttactctgtgagattgtatatcctctgatggccttc
aatcccaaagaagtggggactgaaaaccttttattttgtagatgaaaaaa
ataaaactgagcagtggtggtccacaactcaggaggcagaggcaggcaga
tctctgagtttgaggccagcctgatctacagagggagttcaggacagcca
gggctaaacagagaaatgctatctcgaaaaaaaaaaaaaaaatacaagcc
acaagatgttaacaggaaaaccatctagagttactaaagaattcctatgt
tccaatcgatcaccaacagtagataatactatggaaaggataaacaactc
acaattgaactttctcaagttgagacagatatcaacattcaacatgttta
gaaaacacccccaggtaatggccatcaatgtacaccagagtctgaaaaac
acagccagataggagatagtgttagatcaaaaatgttttccacttcccta
tacattccctggaccagtgtttccttaaactagtttttaggagtgaagac
actgagtatggcttcatcagattccactggggaattttgaaaatgcattt
ccctgtgtactttataaaggcactaaacataactgttaacctattgatac
tgaacttatctgtgttaggattgagattgcatctgaaaaacaaaaaaaaa
caagtacaaaaaaaaaaatccctgacttaatgcaacttacattctaaagg
tgtacacagaacaaattgatatatagtaactagagaatcatgaatagcaa
ggtgaaaaaagtcaagattctataggtagggcagcatagtgctcaaggga
ttctgcagtgggcctgaaggctacaggtaggctacagagggtcccggata
cactcatagaaaaagggaggaaacaagggatatgggtttagcagcagtca
cagagcagagccatttaaaacattcagcatcgtttctagaatagtttctg
ggataagcagtgatgaagagagtctaaagctagagagagagcaacatatg
tacagtttgtgcagtctcagatctactgtgaggcaagaatcatcgagtat
acatcga
gaattcctctattcaaaacgaaaaacaaagcaagcaaaaaatgcaaacag
ggagagaagtcacattaaattatatctgtgctaaagggtaatctaggaca
tattaaaatattagagagcttatttgcacaaataggagttcacaagggag
aagataatttttacttcagcgttctcacctctattagactcaagacacca
gcaataaacacatcctacatccttccacccgtcagcctcatctgactcca
ttctggaggtatcagtaggcctggtcttagcccagattttctcaaccttg
gctgcattctagaattgcctgggtagcactaatgtctctcagtgccctat
caacacccaactcccaccccagaccaagtacagcattgtctgtaggactg
tggtgtgggtatgggtatcttttaatgctttctaaatgctttgaacaagg
agccaagtttgaaatcactgcattttcaatcctgttccctgggtcattag
agtggcctcagatccagggagtcaggatagtactcaaagttcccccaggt
cattctcatatgcaaaccctcttgctttaaacagatccttcaaatgtggt
cacacagctcccattagaaacagctatgcccttcgataaagcagtcattc
ccaggccttctctagacctactcaatcaaaaatggtatccacatatttaa
gctctttgggtgattcaggtccttatagtatttgagtcccacattttaaa
acttcacctctaattgtagatttctcaactcccacagggagagatctagt
cctatacactaaggaaagtggagtttgtcgtcctaagcacgtacaaacac
caggaaataacagccaggtacactgggcacaaagaacaagattttgaata
gcagctatagcatttgcttccttaacagtacaaagggcttgtgtattctc
ctgtgggatgctggtggcttgcttcatggacacagagttcctctataaaa
agagaaaacaggtcaactgaaatgcaacagggggagaaattactttaact
tgattgtgctaaagtaacctggaggctataaaaataagaagtttgttggg
caatagaattcacagtctggcagcacagactgcgaatggtctgatgctcc
tcgcccaggccagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_51539415_51540552
seq2: B6Ng01-055I16.b_46_1152

seq1  GAATTCAGTAGTTCTTACTCTGTGAGATTGTATATCCTCTGATGGCCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGTTCTTACTCTGTGAGATTGTATATCCTCTGATGGCCTTC  50

seq1  AATCCCAAAGAAGTGGGGACTGAAAACCTTTTATTTTGTAGATGAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAAAGAAGTGGGGACTGAAAACCTTTTATTTTGTAGATGAAAAAA  100

seq1  ATAAAACTGAGCAGTGGTGGTCCACAACTCAGGAGGCAGAGGCAGGCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACTGAGCAGTGGTGGTCCACAACTCAGGAGGCAGAGGCAGGCAGA  150

seq1  TCTCTGAGTTTGAGGCCAGCCTGATCTACAGAGGGAGTTCAGGACAGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGTTTGAGGCCAGCCTGATCTACAGAGGGAGTTCAGGACAGCCA  200

seq1  GGGCTAAACAGAGAAATGCTATCTCGAAAAAAAAAAAAAAAATACAAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAAACAGAGAAATGCTATCTCGAAAAAAAAAAAAAAAATACAAGCC  250

seq1  ACAAGATGTTAACAGGAAAACCATCTAGAGTTACTAAAGAATTCCTATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATGTTAACAGGAAAACCATCTAGAGTTACTAAAGAATTCCTATGT  300

seq1  TCCAATCGATCACCAACAGTAGATAATACTATGGAAAGGATAAACAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATCGATCACCAACAGTAGATAATACTATGGAAAGGATAAACAACTC  350

seq1  ACAATTGAACTTTCTCAAGTTGAGACAGATATCAACATTCAACATGTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGAACTTTCTCAAGTTGAGACAGATATCAACATTCAACATGTTTA  400

seq1  GAAAACACCCCCAGGTAATGGCCATCAATGTACACCAGAGTCTGAAAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACACCCCCAGGTAATGGCCATCAATGTACACCAGAGTCTGAAAAAC  450

seq1  ACAGCCAGATAGGAGATAGTGTTAGATCAAAAATGTTTTCCACTTCCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAGATAGGAGATAGTGTTAGATCAAAAATGTTTTCCACTTCCCTA  500

seq1  TACATTCCCTGGACCAGTGTTTCCTTAAACTAGTTTTTAGGAGTGAAGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTCCCTGGACCAGTGTTTCCTTAAACTAGTTTTTAGGAGTGAAGAC  550

seq1  ACTGAGTATGGCTTCATCAGATTCCACTGGGGAATTTTGAAAATGCATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGTATGGCTTCATCAGATTCCACTGGGGAATTTTGAAAATGCATTT  600

seq1  CCCTGTGTACTTTATAAAGGCACTAAACATAACTGTTAACCTATTGATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGTACTTTATAAAGGCACTAAACATAACTGTTAACCTATTGATAC  650

seq1  TGAACTTATCTGTGTTAGGATTGAGATTGCATCTGAAAAACAAAAAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTATCTGTGTTAGGATTGAGATTGCATCTGAAAAACAAAAAAAAA  700

seq1  CAAGTAC-AAAAAAAAAATCCCTGACTTAATGCAACTTACATTCTAAAGG  749
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACAAAAAAAAAAATCCCTGACTTAATGCAACTTACATTCTAAAGG  750

seq1  TGTACACAGAACAAATTGATATATAGTAACTAGAGAATCATGAATAGCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACACAGAACAAATTGATATATAGTAACTAGAGAATCATGAATAGCAA  800

seq1  GGTGAAAAAAGTCAAGATTCTATAGGTAGGGCAGCATAGTGCTC-AGGGA  848
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GGTGAAAAAAGTCAAGATTCTATAGGTAGGGCAGCATAGTGCTCAAGGGA  850

seq1  TTCTGCAGGTGGGCCTGAAGGCTACAGGTAGGCTACAGAGGGTCCCGGAT  898
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCA-GTGGGCCTGAAGGCTACAGGTAGGCTACAGAGGGTCCCGGAT  899

seq1  AACACTCATAGAAAGAAGGGAGGAAACAAGGGATATTGGGTTTTAGGCAG  948
       ||||||||||||| |||||||||||||||||||| |||||||   ||||
seq2  -ACACTCATAGAAA-AAGGGAGGAAACAAGGGATA-TGGGTTT--AGCAG  944

seq1  CAGTCACAGAGCAAGAGCCATTTAAAAACATTCAGGCATCGTTTTCTAGA  998
      |||||||||||| |||||||||| |||||||||| |||||| ||||||| 
seq2  CAGTCACAGAGC-AGAGCCATTT-AAAACATTCA-GCATCG-TTTCTAG-  989

seq1  AATAGTTTTCTGTGGATAAAGCAGTGAATGAAGAGAGTCTAAAAGCTAAG  1048
      ||||| |||||| |||| |||||||| ||||||||||||| ||||||   
seq2  AATAG-TTTCTG-GGAT-AAGCAGTG-ATGAAGAGAGTCT-AAAGCT---  1031

seq1  AAGGAAGGAAGGAAGCAAACCATATGTACAAGTTTGTGCAGTCTTCAGAT  1098
           ||  ||  |||||  ||||||||| ||||||||||||| ||||||
seq2  -----AGAGAGAGAGCAA--CATATGTAC-AGTTTGTGCAGTC-TCAGAT  1072

seq1  CTTACTGTGAGGCAAGAATCCATCGAAGTATTTACATCGA  1138
      | ||||||||||||||||| ||||| ||||  ||||||||
seq2  C-TACTGTGAGGCAAGAAT-CATCG-AGTA--TACATCGA  1107

seq1: chr1_51673166_51674344
seq2: B6Ng01-055I16.g_66_1229 (reverse)

seq1  CCTGGCCTTGGGCAGGAGCATCAGACCATCTGCAGTCTGGTGCTGCCCAG  50
      |||||||| ||  ||||||||||||||||  ||||||| |||||| ||||
seq2  CCTGGCCTGGGCGAGGAGCATCAGACCATTCGCAGTCT-GTGCTG-CCAG  48

seq1  CTTGTGAACTCCTATTTGCCCAAACAAACTCTCTAATATTTTAATATGCC  100
        |||||| | ||| |||||| |||||||| |||  |||||| ||| |||
seq2  ACTGTGAA-TTCTA-TTGCCC-AACAAACT-TCT--TATTTTTATA-GCC  91

seq1  T-CAGTTTACCTTTTAGCACAAATCAAGTTTAAGGTAATTTCTCCCCCTG  149
      | ||| ||||  |||||||| ||||||| |||| ||||||||||||||||
seq2  TCCAGGTTAC--TTTAGCAC-AATCAAG-TTAAAGTAATTTCTCCCCCTG  137

seq1  TTTGCATTTCAGTTGACCTGTTTTTCTCTTTTTAATAGAGGAACTCTGTG  199
       ||||||||||||||||||| |||||||||||| ||||||||||||||||
seq2  -TTGCATTTCAGTTGACCTG-TTTTCTCTTTTT-ATAGAGGAACTCTGTG  184

seq1  TCCATGAAGCAAGCCA-CAGCATTCCCACAGGGGAATACACAAGCCCTTT  248
      |||||||||||||||| ||||| ||||||||| |||||||||||||||||
seq2  TCCATGAAGCAAGCCACCAGCA-TCCCACAGGAGAATACACAAGCCCTTT  233

seq1  GTACTGTTAAGGAAGCAAATGCTATAGCTGCTATTCAAAATCTTGTTCTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGTTAAGGAAGCAAATGCTATAGCTGCTATTCAAAATCTTGTTCTT  283

seq1  TGTGCCCAGTGTACCTGGCTGTTATTTCCTGGTGTTTGTACGTGCTTAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCAGTGTACCTGGCTGTTATTTCCTGGTGTTTGTACGTGCTTAGG  333

seq1  ACGACAAACTCCACCTTCCTTAGTGTATAGGACTAGATCTCTCCCTGTGG  398
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACGACAAACTCCACTTTCCTTAGTGTATAGGACTAGATCTCTCCCTGTGG  383

seq1  GAGTTGAGAAATCTACAATTAGAGGTGAAGTTTTAAAATGTGGGACTCAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGAGAAATCTACAATTAGAGGTGAAGTTTTAAAATGTGGGACTCAA  433

seq1  ATACTATAAGGACCTGAATCACCCAAAGAGCTTAAATATGTGGATACCAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATAAGGACCTGAATCACCCAAAGAGCTTAAATATGTGGATACCAT  483

seq1  TTTTGATTGAGTAGGTCTAGAGAAGGCCTGGGAATGACTGCTTTATCGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATTGAGTAGGTCTAGAGAAGGCCTGGGAATGACTGCTTTATCGAA  533

seq1  GGGCATAGCTGTTTCTAATGGGAGCTGTGTGACCACATTTGAAGGATCTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATAGCTGTTTCTAATGGGAGCTGTGTGACCACATTTGAAGGATCTG  583

seq1  TTTAAAGCAAGAGGGTTTGCATATGAGAATGACCTGGGGGAACTTTGAGT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGCAAGAGGGTTTGCATATGAGAATGACCTGGGGGAACTTTGAGT  633

seq1  ACTATCCTGACTCCCTGGATCTGAGGCCACTCTAATGACCCAGGGAACAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCCTGACTCCCTGGATCTGAGGCCACTCTAATGACCCAGGGAACAG  683

seq1  GATTGAAAATGCAGTGATTTCAAACTTGGCTCCTTGTTCAAAGCATTTAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAAAATGCAGTGATTTCAAACTTGGCTCCTTGTTCAAAGCATTTAG  733

seq1  AAAGCATTAAAAGATACCCATACCCACACCACAGTCCTACAGACAATGCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTAAAAGATACCCATACCCACACCACAGTCCTACAGACAATGCT  783

seq1  GTACTTGGTCTGGGGTGGGAGTTGGGTGTTGATAGGGCACTGAGAGACAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTGGTCTGGGGTGGGAGTTGGGTGTTGATAGGGCACTGAGAGACAT  833

seq1  TAGTGCTACCCAGGCAATTCTAGAATGCAGCCAAGGTTGAGAAAATCTGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTACCCAGGCAATTCTAGAATGCAGCCAAGGTTGAGAAAATCTGG  883

seq1  GCTAAGACCAGGCCTACTGATACCTCCAGAATGGAGTCAGATGAGGCTGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGACCAGGCCTACTGATACCTCCAGAATGGAGTCAGATGAGGCTGA  933

seq1  CGGGTGGAAGGATGTAGGATGTGTTTATTGCTGGTGTCTTGAGTCTAATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTGGAAGGATGTAGGATGTGTTTATTGCTGGTGTCTTGAGTCTAATA  983

seq1  GAGGTGAGAACGCTGAAGTAAAAATTATCTTCTCCCTTGTGAACTCCTAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGAGAACGCTGAAGTAAAAATTATCTTCTCCCTTGTGAACTCCTAT  1033

seq1  TTGTGCAAATAAGCTCTCTAATATTTTAATATGTCCTAGATTACCCTTTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCAAATAAGCTCTCTAATATTTTAATATGTCCTAGATTACCCTTTA  1083

seq1  GCACAGATATAATTTAATGTGACTTCTCTCCCTGTTTGCATTTTTTGCTT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGATATAATTTAATGTGACTTCTCTCCCTGTTTGCATTTTTTGCTT  1133

seq1  GCTTTGTTTTTCGTTTTGAATAGAGGAATTC  1179
      |||||||||||||||||||||||||||||||
seq2  GCTTTGTTTTTCGTTTTGAATAGAGGAATTC  1164