BAC Information

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BAC

Clone NameB6Ng01-055J13
Chromosome8 (Build37)1 (Build37)
Map Location 52,041,909 - 52,042,647171,310,946 - 171,311,447
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG667495, LOC100039954, LOC100039966
Downstream geneLOC667517, LOC623872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055J13.bB6Ng01-055J13.g
ACCDH877997DH877998
length1,023809
definitionDH877997|Mus musculus domesticus DNA, BAC clone: B6Ng01-055J13, 5' end.DH877998|Mus musculus domesticus DNA, BAC clone: B6Ng01-055J13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(52,041,909 - 52,042,647)(171,310,946 - 171,311,447)
sequence
gaattcactctgtaaaccaggttgatcttgaactcacagagattcatctg
tctttgcctccccagtgacaacgctcagcctgttttaccttttcctgaag
gtttagtattgattggtgacatcatcaaggcattccttttatttttagtt
ctctgggtctcaaaaatcactttaaactcctgtcccccacactcaccccc
gccaaagccactcatcggccctgtaagtgagcaggagtgctgtttgtgtt
ctgttggtgtttttaataagcacctgtttgttgtttgtttttgttttttg
aaaaaaccccctcaaagcatgcaataagacacagacaaatgatggcaaag
ttataacagaaaagaaaagttgttaaagaaaaactacaaagtaatatatg
tgaattgacacatatttatttttgtgtctcattcaaaaatgaatgttgct
tttttttttttcaagtgatcgaaaatttcaaacatttttgactttccctt
tccatttcctccatggcttgaagtattttaaaaagcatgaattatttatt
taatcagatagaaagaaacatttttatttaaaaaagaaagtgtgtaatat
gtaaattcaagctaatcactgtaatatcccacccctgtgacttgtggatg
gaagatgtacaggcataggttattttgtatctaatgacttccttcccttc
atctctgctccagtccattcttggattgctcctatgtgtaagctggttga
atcagagcaatttctcttccatagttgctaacaatgtcaccttttagttg
catattatatcttgggctctctgccatcttttgcttctgtattactctgt
tttcttcttctaatttcttcaatgaacttgttctgaagatgctcacctcc
ccatgacttcacagccttctctctttcatctccaaggaagtaatgatttt
caggtaatttaaggtccctaatgatacgttcttgtcttctgtaacttcat
tagctggcacatgcagctatgtc
gaattcacgttgtcaggctgggtgacaaagtcctttacctgatgtcctgg
tttttgttgttgtttggttggtaggtcaaattaaaaggagctggagttag
ttgagaggaagggacctcaattgaaaaaatacccccatcaaattggcctg
aggaaggacccatttcactgtggctggaggtattcctcaaaggtagtcct
gggttctgtaaggaagcacgttgagcaagccagtgaacagcacccttcca
tggcctctgctttatttcctgcctccatgtttctgcccagcttggtttta
gtgtgtgtgtgagtgtgtgtgcgtgctgatggaggtggttggttgtatgt
tcatagcagccttatttataatagccagaagctggaaagaacccagatgc
ccctcaacagaggaatggatacaaaaaaatgtggtacatttacacaatgg
agtactactcagctattaaaaataatgaattacgaaattcctaggcaaat
ggttggacctggagggcatcatcctgagtgtggtaacccaatcacaaaag
aactcaaatgaattgtactcactcataagtggatattagcccagaaactt
agtatagcgagatataaggtacaagatgcagaacacatgaaactgaaaga
agaacgaagaccaaagtgtggacactttgttccttcttagaattggaaca
atcacccatggaaggagttacaaagacaaatttggagctgagacaaaagg
ttggaccatctagagactgccatatccaggatcccttcccatattagcct
ccaaacgat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_52041909_52042647
seq2: B6Ng01-055J13.b_342_1061

seq1  AAACCCCCTCAAAGCATGCAATAAGACACAGACAAATGATGGCAAAGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCCCTCAAAGCATGCAATAAGACACAGACAAATGATGGCAAAGTTA  50

seq1  TAACAGAAAAGAAAAGTTGTTAAAGAAAAACTACAAAGTAATATATGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAAAAGAAAAGTTGTTAAAGAAAAACTACAAAGTAATATATGTGA  100

seq1  ATTGACACATATTTATTTTTGTGTCTCATTCAAAAATGAATGTTGCTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACACATATTTATTTTTGTGTCTCATTCAAAAATGAATGTTGCTTTT  150

seq1  TTTTTTTTCAAGTGATCGAAAATTTCAAACATTTTTGACTTTCCCTTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCAAGTGATCGAAAATTTCAAACATTTTTGACTTTCCCTTTCC  200

seq1  ATTTCCTCCATGGCTTGAAGTATTTTAAAAAGCATGAATTATTTATTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTCCATGGCTTGAAGTATTTTAAAAAGCATGAATTATTTATTTAA  250

seq1  TCAGATAGAAAGAAACATTTTTATTTAAAAAAGAAAGTGTGTAATATGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATAGAAAGAAACATTTTTATTTAAAAAAGAAAGTGTGTAATATGTA  300

seq1  AATTCAAGCTAATCACTGTAATATCCCACCCCTGTGACTTGTGGATGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAAGCTAATCACTGTAATATCCCACCCCTGTGACTTGTGGATGGAA  350

seq1  GATGTACAGGCATAGGTTATTTTGTATCTAATGACTTCCTTCCCTTCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTACAGGCATAGGTTATTTTGTATCTAATGACTTCCTTCCCTTCATC  400

seq1  TCTGCTCCAGTCCATTCTTGGATTGCTCCTATGTGTAAGCTGGTTGAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCCAGTCCATTCTTGGATTGCTCCTATGTGTAAGCTGGTTGAATC  450

seq1  AGAGCAATTTCTCTTCCATAGTTTGCTAACAATGTCACCTTTTTAGTTGC  500
      ||||||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  AGAGCAATTTCTCTTCCATAG-TTGCTAACAATGTCACC-TTTTAGTTGC  498

seq1  ATATTATATCTTTGGCTCTCTGCCATCTTTTTGCTTCTGTATTTACTCTG  550
      |||||||||||| |||||||||||||| ||||||||||||| ||||||||
seq2  ATATTATATCTTGGGCTCTCTGCCATC-TTTTGCTTCTGTA-TTACTCTG  546

seq1  TTTTCTTCTTCTAATTTCCTTCATTGAACTTGTTCTGAAGATGCTCACCC  600
      ||||||||||||||||| ||||| ||||||||||||||||||||||| ||
seq2  TTTTCTTCTTCTAATTT-CTTCAATGAACTTGTTCTGAAGATGCTCA-CC  594

seq1  TCCCCATGACTTTCAACAGCTTTCTCTCTTTCATCTCCAAAGTAAGTAAT  650
      ||||||||||||   ||||| ||||||||||||||||| ||| |||||||
seq2  TCCCCATGACTT--CACAGCCTTCTCTCTTTCATCTCC-AAGGAAGTAAT  641

seq1  GATTTTCAGGTAATTTTAAAGGTTCCTTAATGATACGTTTCTTGTCCTTC  700
      ||||||||||||||||  |||| ||| |||||||||| ||||||| ||||
seq2  GATTTTCAGGTAATTT--AAGG-TCCCTAATGATACG-TTCTTGT-CTTC  686

seq1  TGTTAAACTTCTATTAGCTGGCCACATGCAGCTAATGTC  739
      |||  |||||| ||||||||| ||||||||||| |||||
seq2  TGT--AACTTC-ATTAGCTGG-CACATGCAGCT-ATGTC  720

seq1: chr1_171310946_171311447
seq2: B6Ng01-055J13.g_373_668

seq1  GTGTGAGTGTGTGTGCACATGCATGTATAGGGACTAAAAGGACTTACATG  50
      |||||||||||||||  | |||   |  |||   |    ||  ||  |||
seq2  GTGTGAGTGTGTGTG--CGTGCTGATGGAGG---TGGTTGG--TTGTATG  43

seq1  GGCTTGATATGCAGCCCCAGCT---ATATCCAG-----GAAAAGTACCCC  92
         || ||| ||||||  |  |   ||| ||||     | |||| |||| 
seq2  ---TTCATA-GCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCC-  88

seq1  TTTCTGGAAGATAGACCTCCCCCCATTTTGCA-GGTTCCTGAGAAATGGT  141
              ||||   ||||  |  |    | | || | |  | |||||  
seq2  --------AGATGCCCCTCAACAGA---GGAATGGATACAAAAAAATG--  125

seq1  AATTGTAGGCTTTTA-GCAATCCTTCTAGAGTCCAGCTTGAGCTGAGCCA  190
        | |||  | ||||  |||      | |||| |  ||          ||
seq2  --TGGTA--CATTTACACAA------TGGAGTACTACT----------CA  155

seq1  GGACTGTCATTTCTA--GACGTAGGAACTGCCTTTTGGAGTCTGGTGAGT  238
      |  || | |    ||  ||  || ||| | |||              || 
seq2  G--CTATTAAAAATAATGAATTACGAAATTCCT--------------AG-  188

seq1  TGCAGTTGCCTCTGGACCTCACAATGGTATGTTAAGAAGGGCCTGGTGGT  288
       |||                  ||||||          || |||||    
seq2  -GCA------------------AATGGT---------TGGACCTGG----  206

seq1  ACAAGTCTTTATTCCCTGAAGAGACCTCTGGGGGCTAAGTTCTAGGCCAG  338
        | | | | ||  ||||                              ||
seq2  --AGGGCATCAT--CCTG------------------------------AG  222

seq1  TAGGGGTAAATATATAAGACCCTGACCAGTAAATAAATAAATAAATAAAT  388
      | | ||||          ||||                            
seq2  T-GTGGTA----------ACCC----------------------------  233

seq1  AAATAAATAAATAAATAAATAAATAAATAAATAGCAATAGTAGAGAATGT  438
           ||| |  ||| || |    |||| ||| | | |            
seq2  -----AATCACAAAAGAACT---CAAATGAATTGTACT------------  263

seq1  GTTAATTTGAGAGGATTAGAATTTTCCAGGACACTGATAAGTGGATATTA  488
                                     |||| ||||||||||||||
seq2  -------------------------------CACTCATAAGTGGATATTA  282

seq1  GCCCAGAAATTTAG  502
      ||||||||| ||||
seq2  GCCCAGAAACTTAG  296