BAC Information

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BAC

Clone NameB6Ng01-056J04
Chromosome1 (Build37)
Map Location 193,013,055 - 193,134,192
singlet/doubletdoublet
Overlap geneNenf
Upstream geneLOC100039394, EG666975, Rps6kc1, Angel2, Vash2, LOC100039445, LOC666987, 9630055N22Rik, 1700022P22Rik, Tatdn3, Nsl1, 9130211I03Rik, 4933417M04Rik, Atf3
Downstream gene2310028N02Rik, Ppp2r5a, LOC100039501, LOC667044, Dtl, Ints7, Lpgat1, Nek2, 4930557M11Rik, Slc30a1, 3322402L07Rik, LOC100042611, Traf5, Traf5, LOC100042625, Rcor3, Kcnh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056J04.bB6Ng01-056J04.g
ACCDH878690DH878691
length1,1331,077
definitionDH878690|Mus musculus domesticus DNA, BAC clone: B6Ng01-056J04, 5' end.DH878691|Mus musculus domesticus DNA, BAC clone: B6Ng01-056J04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(193,013,055 - 193,014,206)(193,133,114 - 193,134,192)
sequence
gaattccagaccagtacctgtccctgtatcaaagaaaacccagctggcct
caaaaccatagagatccatctgcctctgcctccagagtgttgggattaga
ggcaggcatcaacacacgggcttctctttcctctctttgtgcatttgtct
cataaacccccaaagttgtcagaaatgactacagaccctagtggaaagtt
tcatctcagaataactgactgatttgaaaagaaatatttgtttaaaaaga
tcagtatgtggcctggtcacaactactatttactcagaacacgttacctg
caaggcacattgtaactctcgaaaaatacaagtgtcttatttgatcttca
tactaattctgtcgggctggtactattttctcagttttatagactaggag
agcaagcccagaaaggttaaagaaaagtgcttgtcagtggttgagtccaa
cacaggtctgtctggtggactgtaagacttctgctgagcatccttgccct
ctgggtcccagagagcttcgcctgggcttatttccttgaactgtgtggtt
ggtctgtgttaaacaggtccttcttacccagcctcctgagtgccagatgg
tcgttgaccttaccaggaaaacctactcccaaaattccagaagattcaca
cttggaaaatgccagcagctccctgtgccttctgtgacactgaactccct
gccaaatttgccattattccctaatttgctttaaccacaggcataagccc
tgctattgactgagtaagctgagcagggctttttagacttttgttctgtt
tcccgaaatatgacaaactgaagtcatctgatgatgaacttgtacttgaa
actggagtggctgagggtggactgagtcactccggtgagctgagactcat
taatcaatccatcaaatcatctcctattgcagtcactgctctcagcagtg
tgctcagacactctgtgctcacaggcaggtggggacacgctctgaccttg
aggagattaaatctccaagtggcaattagcatataaaacagcagcgtctg
gcagtaatattttatcagctcccctttgttgggcactgttgttttttttt
tgttgactgagtccagggacctcccagctctgc
gaattcaggacctttggaaaagcagtcagtgctcttaaccactgagccat
ctctccagccccctacattttagtttttaaagagacttcattgagtgttt
tctgcagtctctcagctgacaggtgtgttctgggtaggtgcaacaccata
agtttgcctgggcctcccatctgccctgtgaagttcatcttcagaactat
agcctttccaagaactggggagtctggagaaccccccaacccctggcttc
catccatgcatacccacactcttccttccgccctgctgcagagttttatg
gacgaggagccccctacaatgccttggccgggaaggactccagcagaggt
gtggccaagatgtcactggatccagcagacctcactcacgacactgtaag
ccggataagcctttgtcaaaacgttccgttcccattctgtggggtttatt
cttggttctcaagacagagtgtcactatgtagccctgtctaggctggaaa
tttctaggtagaccaggatggcctcaaactcacaggactgccaagggctg
agattaaaggtgtgtaccactgagcccagttgtttttagttttgtttgtt
ttgtttaagtctctggattaatcagacttcttttattactctggattttg
aatgtagacatccccaacccccgacacacacacacacacacacacacaca
cacacactaggcaaatgccttaccactgaacaagctccttggcccacaaa
acttcttaataagcctattaatttagcgtatgtggcttgggtagccaact
gctctctgggtcaccctatttaggagcctctgttggcttttcactgccta
cagacttaagtccaactctgtggactcgtcagctgggcatctgtgtgcgc
tgcacacatctctggagtctgcttttggtagtggccgaagcttagtggat
gatttggagaatcaaggccctccttgtgctcatgctttctgtgcaaaaga
acacagcatgttaaaagttgtctggttatagcacgcctgtagtcccagca
ctcgggaggcaaagcagcggatctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_193013055_193014206
seq2: B6Ng01-056J04.b_42_1174

seq1  GAATTCCAGACCAGTACCTGTCCCTGTATCAAAGAAAACCCAGCTGGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACCAGTACCTGTCCCTGTATCAAAGAAAACCCAGCTGGCCT  50

seq1  CAAAACCATAGAGATCCATCTGCCTCTGCCTCCAGAGTGTTGGGATTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACCATAGAGATCCATCTGCCTCTGCCTCCAGAGTGTTGGGATTAGA  100

seq1  GGCAGGCATCAACACACGGGCTTCTCTTTCCTCTCTTTGTGCATTTGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGCATCAACACACGGGCTTCTCTTTCCTCTCTTTGTGCATTTGTCT  150

seq1  CATAAACCCCCAAAGTTGTCAGAAATGACTACAGACCCTAGTGGAAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACCCCCAAAGTTGTCAGAAATGACTACAGACCCTAGTGGAAAGTT  200

seq1  TCATCTCAGAATAACTGACTGATTTGAAAAGAAATATTTGTTTAAAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCAGAATAACTGACTGATTTGAAAAGAAATATTTGTTTAAAAAGA  250

seq1  TCAGTATGTGGCCTGGTCACAACTACTATTTACTCAGAACACGTTACCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATGTGGCCTGGTCACAACTACTATTTACTCAGAACACGTTACCTG  300

seq1  CAAGGCACATTGTAACTCTCGAAAAATACAAGTGTCTTATTTGATCTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCACATTGTAACTCTCGAAAAATACAAGTGTCTTATTTGATCTTCA  350

seq1  TACTAATTCTGTCGGGCTGGTACTATTTTCTCAGTTTTATAGACTAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATTCTGTCGGGCTGGTACTATTTTCTCAGTTTTATAGACTAGGAG  400

seq1  AGCAAGCCCAGAAAGGTTAAAGAAAAGTGCTTGTCAGTGGTTGAGTCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCCCAGAAAGGTTAAAGAAAAGTGCTTGTCAGTGGTTGAGTCCAA  450

seq1  CACAGGTCTGTCTGGTGGACTGTAAGACTTCTGCTGAGCATCCTTGCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTCTGTCTGGTGGACTGTAAGACTTCTGCTGAGCATCCTTGCCCT  500

seq1  CTGGGTCCCAGAGAGCTTCGCCTGGGCTTATTTCCTTGAACTGTGTGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTCCCAGAGAGCTTCGCCTGGGCTTATTTCCTTGAACTGTGTGGTT  550

seq1  GGTCTGTGTTAAACAGGTCCTTCTTACCCAGCCTCCTGAGTGCCAGATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTGTTAAACAGGTCCTTCTTACCCAGCCTCCTGAGTGCCAGATGG  600

seq1  TCGTTGACCTTACCAGGAAAACCTACTCCCAAAATTCCAGAAGATTCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTGACCTTACCAGGAAAACCTACTCCCAAAATTCCAGAAGATTCACA  650

seq1  CTTGGAAAATGCCAGCAGCTCCCTGTGCCTTCTGTGACACTGAACTCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAAATGCCAGCAGCTCCCTGTGCCTTCTGTGACACTGAACTCCCT  700

seq1  GCCAAATTTGCCATTATTCCCTAATTTGCTTTAACCACAGGCATAAGCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATTTGCCATTATTCCCTAATTTGCTTTAACCACAGGCATAAGCCC  750

seq1  TGCTATTGACTGAGTAAGCTGAGCAGGGCTTTTTAGACTTTTGTTCTGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTGACTGAGTAAGCTGAGCAGGGCTTTTTAGACTTTTGTTCTGTT  800

seq1  TCCCGAAATATGACAAACTGAAGTCATCTGATGATGAACTTGTACTTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAAATATGACAAACTGAAGTCATCTGATGATGAACTTGTACTTGAA  850

seq1  ACTGGAGTGGCTGAGGGTGGACTGAGTCACTCCGGTGAGCTGAGACTCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGTGGCTGAGGGTGGACTGAGTCACTCCGGTGAGCTGAGACTCAT  900

seq1  TAATCAATCCATCAAATCATCTCCTATTGCCAGTCACTGCTCTCAGCAGT  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TAATCAATCCATCAAATCATCTCCTATTG-CAGTCACTGCTCTCAGCAGT  949

seq1  GTGCTCAGACACTCTGTGCTCACAAGGGCAGGGTGGGGACACGCTCTGAC  1000
      ||||||||||||||||||||||||  |||| |||||||||||||||||||
seq2  GTGCTCAGACACTCTGTGCTCACA--GGCA-GGTGGGGACACGCTCTGAC  996

seq1  CTTGAGGAGATTAAAATCTCCAAGTGGCAAATTAGCATATAAAACAGCAG  1050
      |||||||||||| ||||||||||||||| |||||||||||||||||||||
seq2  CTTGAGGAGATT-AAATCTCCAAGTGGC-AATTAGCATATAAAACAGCAG  1044

seq1  CGTCTGGCAGTAAATATTTTATCAAGCTCCCACTGTGTTGTGGCACTGTG  1100
      ||||||||||| ||||||||||| ||||||| || ||||| |||||||| 
seq2  CGTCTGGCAGT-AATATTTTATC-AGCTCCC-CTTTGTTG-GGCACTGT-  1089

seq1  TGTGTGTGTGTGTGTGTGAGCTTAGAGTCACAGTGGAACATCCCAGCTCT  1150
      ||| | | | | ||| ||| ||  ||||| ||  || || ||||||||||
seq2  TGT-TTTTTTTTTGT-TGA-CT--GAGTC-CA--GGGACCTCCCAGCTCT  1131

seq1  GC  1152
      ||
seq2  GC  1133

seq1: chr1_193133114_193134192
seq2: B6Ng01-056J04.g_70_1146 (reverse)

seq1  CAGAGATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGACTACAGGCGTGCT  50
      |||||||||| ||| || ||||||||||||||||||||||||||||||||
seq2  CAGAGATCCG-CTG-CTTTGCCTCCCGAGTGCTGGGACTACAGGCGTGCT  48

seq1  ATAACCAGGCCCACTTTTAACATGCTGTGGTCTTCTGCACAG-AAGCATG  99
      ||||||| | | ||||||||||||||||| |||| ||||||| |||||||
seq2  ATAACCA-GACAACTTTTAACATGCTGTGTTCTTTTGCACAGAAAGCATG  97

seq1  AGCACAGGGAGGGGCCTTGATTCTCCAAGTCCATCCACTAAGCTTCGGCA  149
      |||||| ||| ||||||||||||||||| | |||||||||||||||||| 
seq2  AGCACAAGGA-GGGCCTTGATTCTCCAAAT-CATCCACTAAGCTTCGGCC  145

seq1  ACTACCAAGAGCAGGACT-CAGAGATGTGTGCAGCGCACACAGATGCCCA  198
      |||||||| |||| |||| |||||||||||||||||||||||||||||||
seq2  ACTACCAAAAGCA-GACTCCAGAGATGTGTGCAGCGCACACAGATGCCCA  194

seq1  GCTGACGAGTCCACAGAGTTTGGACTTAAGTCTGTAGGCAGTGAAAAGCC  248
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCTGACGAGTCCACAGAG-TTGGACTTAAGTCTGTAGGCAGTGAAAAGCC  243

seq1  AACAGAGGCTCCTAAATAGGGTGACCCAGAGAGCAGTTGGCTA-CCAAGC  297
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AACAGAGGCTCCTAAATAGGGTGACCCAGAGAGCAGTTGGCTACCCAAGC  293

seq1  CACATACGCT-AATTAATAGGCTTATTAAGAAGTTTTGTGGGCCAAGGAG  346
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CACATACGCTAAATTAATAGGCTTATTAAGAAGTTTTGTGGGCCAAGGAG  343

seq1  CTTGTTCAGTGGTAAGGCATTTGCCTAGTGTGTGTGTGTGTGTGTGTGTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCAGTGGTAAGGCATTTGCCTAGTGTGTGTGTGTGTGTGTGTGTG  393

seq1  TGTGTGTGTGTCGGGGGTTGGGGATGTCTACATTC-AAATCCAGAGTAAT  445
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGTGTGTGTGTCGGGGGTTGGGGATGTCTACATTCAAAATCCAGAGTAAT  443

seq1  AAAAGAAGTCTGATTAATCCAGAGACTTAAACAAAACAAACAAAACTAAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGTCTGATTAATCCAGAGACTTAAACAAAACAAACAAAACTAAA  493

seq1  AACAACTGGGCTCAGTGGTACACACCTTTAATCTCAGCCCTTGGCAGTCC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTGGGCTCAGTGGTACACACCTTTAATCTCAGCCCTTGGCAGTCC  543

seq1  TGTGAGTTTGAGGCCATCCTGGTCTACCTAGAAATTTCCAGCCTAGACAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTTTGAGGCCATCCTGGTCTACCTAGAAATTTCCAGCCTAGACAG  593

seq1  GGCTACATAGTGACACTCTGTCTTGAGAACCAAGAATAAACCCCACAGAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACATAGTGACACTCTGTCTTGAGAACCAAGAATAAACCCCACAGAA  643

seq1  TGGGAACGGAACGTTTTGACAAAGGCTTATCCGGCTTACAGTGTCGTGAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACGGAACGTTTTGACAAAGGCTTATCCGGCTTACAGTGTCGTGAG  693

seq1  TGAGGTCTGCTGGATCCAGTGACATCTTGGCCACACCTCTGCTGGAGTCC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCTGCTGGATCCAGTGACATCTTGGCCACACCTCTGCTGGAGTCC  743

seq1  TTCCCGGCCAAGGCATTGTAGGGGGCTCCTCGTCCATAAAACTCTGCAGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCGGCCAAGGCATTGTAGGGGGCTCCTCGTCCATAAAACTCTGCAGC  793

seq1  AGGGCGGAAGGAAGAGTGTGGGTATGCATGGATGGAAGCCAGGGGTTGGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCGGAAGGAAGAGTGTGGGTATGCATGGATGGAAGCCAGGGGTTGGG  843

seq1  GGGTTCTCCAGACTCCCCAGTTCTTGGAAAGGCTATAGTTCTGAAGATGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTCCAGACTCCCCAGTTCTTGGAAAGGCTATAGTTCTGAAGATGA  893

seq1  ACTTCACAGGGCAGATGGGAGGCCCAGGCAAACTTATGGTGTTGCACCTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCACAGGGCAGATGGGAGGCCCAGGCAAACTTATGGTGTTGCACCTA  943

seq1  CCCAGAACACACCTGTCAGCTGAGAGACTGCAGAAAACACTCAATGAAGT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAACACACCTGTCAGCTGAGAGACTGCAGAAAACACTCAATGAAGT  993

seq1  CTCTTTAAAAACTAAAATGTAGGGGGCTGGAGAGATGGCTCAGTGGTTAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAAAAACTAAAATGTAGGGGGCTGGAGAGATGGCTCAGTGGTTAA  1043

seq1  GAGCACTGACTGCTTTTCCAAAGGTCCTGAATTC  1079
      ||||||||||||||||||||||||||||||||||
seq2  GAGCACTGACTGCTTTTCCAAAGGTCCTGAATTC  1077