BAC Information

Click to search

BAC

Clone NameB6Ng01-056J15
Chromosome1 (Build37)2 (Build37)
Map Location 95,631,916 - 95,632,36191,718,438 - 91,719,543
singlet/doubletsingletsinglet
Overlap geneThap4
Upstream geneGpc1, Ankmy1, Dusp28, LOC100040511, Rnpepl1, Capn10, Gpr35, Aqp12, Kif1a, Agxt, 2310007B03Rik, E030010N08Rik, Sned1, Mterfd2, LOC665966, Pask, Ppp1r7, Tmem16g, Hdlbp, Sept2, Farp2, Stk25, Bok
Downstream geneAtg4b, Dtymk, Ing5, D2hgdh, Gal3st2, LOC100041596, EG666009, EG619597, Neu4, Pdcd1, LOC666012, LOC666025, LOC100040685
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056J15.bB6Ng01-056J15.g
ACCDH878710DH878711
length2541,091
definitionDH878710|Mus musculus domesticus DNA, BAC clone: B6Ng01-056J15, 5' end.DH878711|Mus musculus domesticus DNA, BAC clone: B6Ng01-056J15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(95,631,916 - 95,632,361)(91,718,438 - 91,719,543)
sequence
aggtcatctggcttgatagtaatctgagccattttgtttttttttttttg
tttggtttttgtttttttttagacagggtttctctgagtagccctggctg
tcctggaactcactctgtagaccaggctggcctcgaactcagaaatccac
ctgcctctgcctcccaagtgctgggattaaaggcgtgcgccaccactgcc
cggcgactttatttttttttataaacttttttttttttgtgggttgctgt
tttt
gaattcaaaaccagtcttgggctacagtgaggatttgtttgaaaacaaaa
aggaacaaacaatgcctatagatgagattattagttggaacaagctgtgt
agagagggagataaggcaatatctaccaaaataatacatgcacctttcct
tccctgaagttgtatttcaaagcagctatcctactgacatgcatgtgtaa
gacaatcggtagcagtttatatagcaagattatgaactccaaagtccttc
aagaggacactggttataatgaattactaggtagctattttttcaaaaga
ggagaaaggggtgcaggcagggaaggaggaggagtggcagctgtgggggc
tgcctgcaccagcagcaatagcagcagcagctgcagctgccaccagagtg
atagctcatgcctataatctcagcactccaggaagcagagacaagaggac
tgctgcaagctcccggctaacctgggattcggagtaagaccctatctcta
aacaagacatgaagaactagagacagctcagtgggtaaaacacaagcttg
tcctgaaagcatgagaacttgagtttaaatctcccagcaccaaagcaata
aactggtcacagaaaggtagaaaggaggaaagggagaaaggaagaaaggc
attctgcaatcacagtaccgaggaacgaacgacaggcagatcctgcgtgc
cttctgactctctcaaggcagtaggatgagaagcaatagaggaagtctac
agacatcttgctcaggcctctgcatgagcacacatagatgcatacatata
agacacacacactcacacacacactcacacacatactctttacaaaaata
tggaagatcatgagatacactgtacagaaaaaaagtgagagagtgttgta
taacacatttacatttagatcacacaaagatggaaagcaatgctctcaat
gtgcatatacacacatacacattcatctttcagagttaagactgaaactg
atagggttactactacaatgaagtctcaggcagcacgtgtagggttagga
gttcttattgatatccttttttaaaaaattatttttttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_95631916_95632361
seq2: B6Ng01-056J15.b_84_305 (reverse)

seq1  -AAAA---------ACAAAAAAAAAAAA----AAACAAAAAAAACCTTTA  36
       ||||         ||||||||||||||    | | |||||||     | 
seq2  AAAAACAGCAACCCACAAAAAAAAAAAAGTTTATAAAAAAAAATAAAGTC  50

seq1  GCCGGGC-GTGGTGGCGCATGCCTTTAATCCCAGCACTCGGGAGGCAGAG  85
      ||||||| ||||||||||| |||||||||||||||||| |||||||||||
seq2  GCCGGGCAGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGGCAGAG  100

seq1  GCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCC  135
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCC  150

seq1  AGGACAGCCAGGGCTACACAGAGAAACCCTGTCT---------CAAAAAA  176
      ||||||||||||||||| ||||||||||||||||         |||||| 
seq2  AGGACAGCCAGGGCTACTCAGAGAAACCCTGTCTAAAAAAAAACAAAAAC  200

seq1  CAAAAAACAAAAAACAAACAAAGAGTCACCCATGCTGCCATTCCAAAGGT  226
      |||| || |||||| |||||||                            
seq2  CAAACAAAAAAAAAAAAACAAA----------------------------  222

seq1  ATGAATTAAAAAGAGTTCCTCCCCCCCCGCCCCCCCCCAGCACTTGGTGG  276
                                                        
seq2  --------------------------------------------------  222

seq1  CACACACCTTTATTCCCAGCACTCGGGAGGCAGAGGCAGGTGAATTTCTG  326
                                                        
seq2  --------------------------------------------------  222

seq1  AGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCT  376
                                                        
seq2  --------------------------------------------------  222

seq1  ACACAGAGAAACCGTGTCTCAAACTACAACAACAACAACAACAGAAACAA  426
                                                        
seq2  --------------------------------------------------  222

seq1  AAAAAAAAACCCAAAACAAA  446
                          
seq2  --------------------  222

seq1: chr2_91718438_91719543
seq2: B6Ng01-056J15.g_67_1157 (reverse)

seq1  AATAAAAAAATAAATTTTTTTTTAAAAAAAGGATATACAATAAGAACTTT  50
      |||||||||||||     ||||| |||||||||||| ||||||||||  |
seq2  AATAAAAAAATAA-----TTTTTTAAAAAAGGATAT-CAATAAGAAC--T  42

seq1  CTTAACCCTACACCCTGCTGCCTGTGAC-TCCTTGTAGTAGGTAACCACT  99
      | |||||||||| | ||||||||| ||| || |||||||| |||||| ||
seq2  CCTAACCCTACA-CGTGCTGCCTGAGACTTCATTGTAGTA-GTAACC-CT  89

seq1  ATCAGTTTCAGTTCTTATCTCTTGAAAGATGAATGTGTATGTGTGTATAT  149
      ||||||||||| ||||| ||| ||||||||||||||||||||||||||||
seq2  ATCAGTTTCAG-TCTTAACTC-TGAAAGATGAATGTGTATGTGTGTATAT  137

seq1  GCACATTGAGAGCATTGCTTTCCATCTTTTGTGTGATCTAAATGTAAATG  199
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GCACATTGAGAGCATTGCTTTCCATC-TTTGTGTGATCTAAATGTAAATG  186

seq1  TGTTATACAACACTCTTCTCACTTTTTTTTCTGTACAGTGTATCTCATGA  249
      ||||||||||||||| |||||| |||||||||||||||||||||||||||
seq2  TGTTATACAACACTC-TCTCAC-TTTTTTTCTGTACAGTGTATCTCATGA  234

seq1  TCTTCCATATTTTTGTAAAGAGTATGTGTGTGAGTGTGTGTGTGAGTGTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCATATTTTTGTAAAGAGTATGTGTGTGAGTGTGTGTGTGAGTGTG  284

seq1  TGTGTCTTATATGTATGCATCTATGTGTGCTCATGCAGAGGCCTGAGCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTTATATGTATGCATCTATGTGTGCTCATGCAGAGGCCTGAGCAA  334

seq1  GATGTCTGTAGACTTCCTCTATTGCTTCTCATCCTACTGCCTTGAGAGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCTGTAGACTTCCTCTATTGCTTCTCATCCTACTGCCTTGAGAGAG  384

seq1  TCAGAAGGCACGCAGGATCTGCCTGTCGTTCGTTCCTCGGTACTGTGATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGGCACGCAGGATCTGCCTGTCGTTCGTTCCTCGGTACTGTGATT  434

seq1  GCAGAATGCCTTTCTTCCTTTCTCCCTTTCCTCCTTTCTACCTTTCTGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAATGCCTTTCTTCCTTTCTCCCTTTCCTCCTTTCTACCTTTCTGTG  484

seq1  ACCAGTTTATTGCTTTGGTGCTGGGAGATTTAAACTCAAGTTCTCATGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTTTATTGCTTTGGTGCTGGGAGATTTAAACTCAAGTTCTCATGCT  534

seq1  TTCAGGACAAGCTTGTGTTTTACCCACTGAGCTGTCTCTAGTTCTTCATG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGACAAGCTTGTGTTTTACCCACTGAGCTGTCTCTAGTTCTTCATG  584

seq1  TCTTGTTTAGAGATAGGGTCTTACTCCGAATCCCAGGTTAGCCGGGAGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTAGAGATAGGGTCTTACTCCGAATCCCAGGTTAGCCGGGAGCT  634

seq1  TGCAGCAGTCCTCTTGTCTCTGCTTCCTGGAGTGCTGAGATTATAGGCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCAGTCCTCTTGTCTCTGCTTCCTGGAGTGCTGAGATTATAGGCAT  684

seq1  GAGCTATCACTCTGGTGGCAGCTGCAGCTGCTGCTGCTATTGCTGCTGGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTATCACTCTGGTGGCAGCTGCAGCTGCTGCTGCTATTGCTGCTGGT  734

seq1  GCAGGCAGCCCCCACAGCTGCCACTCCTCCTCCTTCCCTGCCTGCACCCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCAGCCCCCACAGCTGCCACTCCTCCTCCTTCCCTGCCTGCACCCC  784

seq1  TTTCTCCTCTTTTGAAAAAATAGCTACCTAGTAATTCATTATAACCAGTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTCTTTTGAAAAAATAGCTACCTAGTAATTCATTATAACCAGTG  834

seq1  TCCTCTTGAAGGACTTTGGAGTTCATAATCTTGCTATATAAACTGCTACC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTGAAGGACTTTGGAGTTCATAATCTTGCTATATAAACTGCTACC  884

seq1  GATTGTCTTACACATGCATGTCAGTAGGATAGCTGCTTTGAAATACAACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTCTTACACATGCATGTCAGTAGGATAGCTGCTTTGAAATACAACT  934

seq1  TCAGGGAAGGAAAGGTGCATGTATTATTTTGGTAGATATTGCCTTATCTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGAAGGAAAGGTGCATGTATTATTTTGGTAGATATTGCCTTATCTC  984

seq1  CCTCTCTACACAGCTTGTTCCAACTAATAATCTCATCTATAGGCATTGTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTACACAGCTTGTTCCAACTAATAATCTCATCTATAGGCATTGTT  1034

seq1  TGTTCCTTTTTGTTTTCAAACAAATCCTCACTGTAGCCCAAGACTGGTTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTTTTTGTTTTCAAACAAATCCTCACTGTAGCCCAAGACTGGTTT  1084

seq1  TGAATTC  1106
      |||||||
seq2  TGAATTC  1091