BAC Information

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BAC

Clone NameB6Ng01-056L19
Chromosome1 (Build37)
Map Location 166,592,601 - 166,715,108
singlet/doubletdoublet
Overlap genenone
Upstream geneGm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065
Downstream geneDpt, Xcl1, 1700029M03Rik, Tbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056L19.bB6Ng01-056L19.g
ACCDH878804DH878805
length1,2111,081
definitionDH878804|Mus musculus domesticus DNA, BAC clone: B6Ng01-056L19, 5' end.DH878805|Mus musculus domesticus DNA, BAC clone: B6Ng01-056L19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,713,868 - 166,715,108)(166,592,601 - 166,593,318)
sequence
gaattcagtcacgtggattacttttaggaaaaacaaaacctgtgatcgtt
cttccctggtctgtgcttcatcttttcacagtgcagcaaactcttagtgt
cttcggcatccaacacacctgcagggctcagcttagagaaacaaccccct
ccccagacgactttgctgacacccgagtgatattgtgtcttgcatattct
tgtttgaggtgtcccctgtaacaacttccacaggttttttgcgctgttct
gtttcttttctagaaacatattctaaactaccatagccctagacatagac
attttggtgttcacccttatgcccacatgtctatctgcatcctgatggag
tactactgttgctgttatagaacttaaaccttgagcagttttcagccatg
cacatagcttatgttacctctgagccacatcttgacactcgtggctgccc
cctggttcttccagtttttctatcaatgatagcatgtctgtattacttat
cagatatttgggcatcgaactatgatcagctgaggaccaggttattttca
gttttacatattagagaataaagtatattttgcaatgttttccctagaat
caatttattagaatcatggaattttctcctgactcctttgaatacaatgt
aggtatcatttattgattgcttattgatggtgataaccaacagctatggc
ttttttggctgttcctttgtcattctctgatgaagtgtcttgtagaaacc
ctagctagggcaagatatttcctaagatggtcctagtcttcttcctgaga
gggagattctttttacaaaaaagtatttaaggtaaatctagtataatgat
ccctaaacctcacaagaactagtgcttcaatccaaactctgaggatagat
agtaatacagaaaatttgggctttaaatctttaaagtaatgatctagatc
agctaagtcatgtgtgaatatatggattttgttattggtaagttctgtga
tgtacaaataattttaattcatcttttgttctcttaactgtttgtgtctt
tggcaaaggttttcatcttcaaaaaatttaaaaatatttgaattcattct
ttgagatttcatggatttatcatttgcactctctgtacccacctttttct
caatagaagatcattttattacgaacagccacttaatgcttaccttggga
gccagagatgg
gaattctctatttctgaacttctgagaatttcttttatcatgtatgggta
ttgaatttcctcaattttttttttttatgcttcaactattaaaatgaact
gatctggcttttcttttgttcatcaattaacttgataaattattttgatt
catttttgagatttaaggcagttttatattcttggcctaaactgtttttt
ttttctatgtatatttttatattttgagaattttgactcgctaagtggct
agtaaagatgtatgaaagctattaataatgtacttttctttctatattgt
atccttctgtcttgggtctagggtgatattcacctcttcaagtgagccaa
cacactccttctggtacattttataatggcatctctagaactgataccat
ttctcagcaaattttggtgcaattcagctgtgaaattctcatattggagt
tttgtcccaggaagtattttaattttaaatgcaatttctttcacagattt
aaaaaaaaaaaacaaaaaacaaaactaacctattcaattcatcctttggc
ttttatgtgacaggtagtttgcatttttccaatttcttaatttctttcca
gttttatccaagccattgaatgtataggctcaaagctaccttgctatttc
cttcttgtccctttcgtgcctgcaggagtactaatggtgccccactctgc
tctcatggccaactctgccgcttttcctttgttgccttatcagtttggcc
acaggcttatcagcttttctttgttcatcatttcaaaatctattttgata
ttctgattttattgttttgtcttttgttttttttctctccttcaactttg
tttgttgtttttattttgcatagtttaatcataaaagtcaataaataaac
tgaatatgacagcggagacaccatacaggcatttccttttcagatgctac
catggggaatctgggcttgaacagatggagaagagctcccttggtctcca
ccagggaagagctgataagcgtacttgttttttctttagaaaaaggaagc
cctcttaggggagaaggctaccgctcaagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_166713868_166715108
seq2: B6Ng01-056L19.b_43_1253 (reverse)

seq1  CCATCTCCTCAGCTCCCAAGTTTAGCCTTTTAAATGTTGCTTTGTCTGTA  50
      |||||||    ||||||||| | ||| ||    | || ||  |||  |||
seq2  CCATCTC--TGGCTCCCAAGGTAAGCATT----AAGTGGC--TGTTCGTA  42

seq1  AATTATAATTGGATCTTTACTATTGAGAAAAA-GTTGGTACAGAGATGGC  99
      |  || |||  ||||||  ||||||||||||| || ||||||||||  ||
seq2  A--TAAAAT--GATCTT--CTATTGAGAAAAAGGTGGGTACAGAGAGTGC  86

seq1  ACAATGATAAAAATCCACTGAAATTCTCAAAGAATGAATTTCAAATATTT  149
      | ||||||  ||||||| ||||| |||||||||||||| |||||||||||
seq2  A-AATGAT--AAATCCA-TGAAA-TCTCAAAGAATGAA-TTCAAATATTT  130

seq1  TTTAAAATTTTTTGAAGAATGAAAAACCTTTGCCAAAGACACAAAACAGT  199
      ||  ||||||||||||| ||| |||||||||||||||||||| |||||||
seq2  TT--AAATTTTTTGAAG-ATG-AAAACCTTTGCCAAAGACAC-AAACAGT  175

seq1  TAAGAGGACAAAAGGATGAATAAAAATTATTTGTTAACATTCACAGAACT  249
      |||||| |||||| ||||||| ||||||||||||  ||| ||||||||||
seq2  TAAGAGAACAAAA-GATGAATTAAAATTATTTGT--ACA-TCACAGAACT  221

seq1  TACCAATAACAAAATCCATTATATTCACACATGACTTAGCCTGATCTAGA  299
      |||||||||||||||||| |||||||||||||||||||| ||||||||||
seq2  TACCAATAACAAAATCCA-TATATTCACACATGACTTAG-CTGATCTAGA  269

seq1  TCATTACTTTAAAGGATTTAAAG-CCAAATTTTCTGTATTACTATCTATC  348
      ||||||||||||| ||||||||| ||||||||||||||||||||||||||
seq2  TCATTACTTTAAA-GATTTAAAGCCCAAATTTTCTGTATTACTATCTATC  318

seq1  CTCAGAGTTTGGATTGAAGCACTAGTTCTTGTGAGGTTTAGGGATCATTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGTTTGGATTGAAGCACTAGTTCTTGTGAGGTTTAGGGATCATTA  368

seq1  TACTAGATTTACCTTAAATACTTTTTTGTAAAAAGAATCTCCCTCTCAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAGATTTACCTTAAATACTTTTTTGTAAAAAGAATCTCCCTCTCAGG  418

seq1  AAGAAGACTAGGACCATCTTAGGAAATATCTTGCCCTAGCTAGGGTTTCT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGACTAGGACCATCTTAGGAAATATCTTGCCCTAGCTAGGGTTTCT  468

seq1  ACAAGACACTTCATCAGAGAATGACAAAGGAACAGCCAAAAAAGCCATAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACACTTCATCAGAGAATGACAAAGGAACAGCCAAAAAAGCCATAG  518

seq1  CTGTTGGTTATCACCATCAATAAGCAATCAATAAATGATACCTACATTGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGTTATCACCATCAATAAGCAATCAATAAATGATACCTACATTGT  568

seq1  ATTCAAAGGAGTCAGGAGAAAATTCCATGATTCTAATAAATTGATTCTAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAGGAGTCAGGAGAAAATTCCATGATTCTAATAAATTGATTCTAG  618

seq1  GGAAAACATTGCAAAATATACTTTATTCTCTAATATGTAAAACTGAAAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACATTGCAAAATATACTTTATTCTCTAATATGTAAAACTGAAAAT  668

seq1  AACCTGGTCCTCAGCTGATCATAGTTCGATGCCCAAATATCTGATAAGTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGTCCTCAGCTGATCATAGTTCGATGCCCAAATATCTGATAAGTA  718

seq1  ATACAGACATGCTATCATTGATAGAAAAACTGGAAGAACCAGGGGGCAGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGACATGCTATCATTGATAGAAAAACTGGAAGAACCAGGGGGCAGC  768

seq1  CACGAGTGTCAAGATGTGGCTCAGAGGTAACATAAGCTATGTGCATGGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGTGTCAAGATGTGGCTCAGAGGTAACATAAGCTATGTGCATGGCT  818

seq1  GAAAACTGCTCAAGGTTTAAGTTCTATAACAGCAACAGTAGTACTCCATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTGCTCAAGGTTTAAGTTCTATAACAGCAACAGTAGTACTCCATC  868

seq1  AGGATGCAGATAGACATGTGGGCATAAGGGTGAACACCAAAATGTCTATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCAGATAGACATGTGGGCATAAGGGTGAACACCAAAATGTCTATG  918

seq1  TCTAGGGCTATGGTAGTTTAGAATATGTTTCTAGAAAAGAAACAGAACAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGGCTATGGTAGTTTAGAATATGTTTCTAGAAAAGAAACAGAACAG  968

seq1  CGCAAAAAACCTGTGGAAGTTGTTACAGGGGACACCTCAAACAAGAATAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAAAAACCTGTGGAAGTTGTTACAGGGGACACCTCAAACAAGAATAT  1018

seq1  GCAAGACACAATATCACTCGGGTGTCAGCAAAGTCGTCTGGGGAGGGGGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGACACAATATCACTCGGGTGTCAGCAAAGTCGTCTGGGGAGGGGGT  1068

seq1  TGTTTCTCTAAGCTGAGCCCTGCAGGTGTGTTGGATGCCGAAGACACTAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCTAAGCTGAGCCCTGCAGGTGTGTTGGATGCCGAAGACACTAA  1118

seq1  GAGTTTGCTGCACTGTGAAAAGATGAAGCACAGACCAGGGAAGAACGATC  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGCTGCACTGTGAAAAGATGAAGCACAGACCAGGGAAGAACGATC  1168

seq1  ACAGGTTTTGTTTTTCCTAAAAGTAATCCACGTGACTGAATTC  1241
      |||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTTTTGTTTTTCCTAAAAGTAATCCACGTGACTGAATTC  1211

seq1: chr1_166592601_166593318
seq2: B6Ng01-056L19.g_446_1149

seq1  GGCATCTCTAGAACTGATACCATTTCTCAGCAAATTTTGGTGCAATTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTCTAGAACTGATACCATTTCTCAGCAAATTTTGGTGCAATTCAG  50

seq1  CTGTGAAATTCTCATATTGGAGTTTTGTCCCAGGAAGTATTTTAATTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAATTCTCATATTGGAGTTTTGTCCCAGGAAGTATTTTAATTTTA  100

seq1  AATGCAATTTCTTTCACAGATTTAAAAAAAAAAAACAAAAAACAAAACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAATTTCTTTCACAGATTTAAAAAAAAAAAACAAAAAACAAAACTA  150

seq1  ACCTATTCAATTCATCCTTTGGCTTTTATGTGACAGGTAGTTTGCATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATTCAATTCATCCTTTGGCTTTTATGTGACAGGTAGTTTGCATTTT  200

seq1  TCCAATTTCTTAATTTCTTTCCAGTTTTATCCAAGCCATTGAATGTATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATTTCTTAATTTCTTTCCAGTTTTATCCAAGCCATTGAATGTATAG  250

seq1  GCTCAAAGCTACCTTGCTATTTCCTTCTTGTCCCTTTCGTGCCTGCAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAAGCTACCTTGCTATTTCCTTCTTGTCCCTTTCGTGCCTGCAGGA  300

seq1  GTACTAATGGTGCCCCACTCTGCTCTCATGGCCAACTCTGCCGCTTTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAATGGTGCCCCACTCTGCTCTCATGGCCAACTCTGCCGCTTTTCC  350

seq1  TTTGTTGCCTTATCAGTTTGGCCACAGGCTTATCAGCTTTTCTTTGTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGCCTTATCAGTTTGGCCACAGGCTTATCAGCTTTTCTTTGTTCA  400

seq1  TCATTTCAAAATCTATTTTGATATTCTGTATTTTATTGTTTTTGTCTTTT  450
      |||||||||||||||||||||||||||| ||||||||| |||||||||||
seq2  TCATTTCAAAATCTATTTTGATATTCTG-ATTTTATTG-TTTTGTCTTTT  448

seq1  GTTTTTTTTCTCTCCTTCAACTTTGTTTGTTTGTTTTTTATTTTTGCATT  500
      ||||||||||||||||||||||||||||| ||||||||   ||||||| |
seq2  GTTTTTTTTCTCTCCTTCAACTTTGTTTG-TTGTTTTT--ATTTTGCA-T  494

seq1  AGTTTAATCATAAAAAGTCAATAAATAAAACTGAATATGACAGCGGAGAC  550
      ||||||||||| |||||||||||||| |||||||||||||||||||||||
seq2  AGTTTAATCAT-AAAAGTCAATAAAT-AAACTGAATATGACAGCGGAGAC  542

seq1  ACCATACAGGCATTTTCCTTTTCAGATGCTACCATGGGGAATCTGGGCTT  600
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACCATACAGGCA-TTTCCTTTTCAGATGCTACCATGGGGAATCTGGGCTT  591

seq1  GAACAGAT-GAGTAGAGACTCCCTTGGTCTCCAACCAGGGACAGAGCTGA  649
      |||||||| ||| |||| |||||||||||||| |||||||| ||||||||
seq2  GAACAGATGGAGAAGAG-CTCCCTTGGTCTCC-ACCAGGGA-AGAGCTGA  638

seq1  TAAGGCGCTACTTG-TTTTTCTTTAGAAAAAGAGAAG-CCTCTTAGGGGA  697
      ||| ||| |||||| ||||||||||||||||| |||| ||||||||||||
seq2  TAA-GCG-TACTTGTTTTTTCTTTAGAAAAAG-GAAGCCCTCTTAGGGGA  685

seq1  GAAGGGCTACAGCTCAGAGAG  718
      ||| |||||| ||||| ||||
seq2  GAA-GGCTACCGCTCA-AGAG  704