BAC Information

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BAC

Clone NameB6Ng01-056O12
Chromosome1 (Build37)
Map Location 165,199,637 - 165,283,951
singlet/doubletdoublet
Overlap genePrrx1, LOC100039597
Upstream geneDnm3, 5630401D24Rik, Vamp4, LOC435651, Myoc, Bat2d, Fmo4, Fmo1, Fmo2, Fmo6, Fmo3, 4921528O07Rik
Downstream geneScyl1bp1, LOC665237, Gm207, LOC100039626, Kifap3, Scyl3, BC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056O12.bB6Ng01-056O12.g
ACCDH878926DH878927
length1,1121,118
definitionDH878926|Mus musculus domesticus DNA, BAC clone: B6Ng01-056O12, 5' end.DH878927|Mus musculus domesticus DNA, BAC clone: B6Ng01-056O12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,282,831 - 165,283,951)(165,199,637 - 165,200,789)
sequence
gaattcattcagagacaaccgaataacatctgtgtgtgttatatctagtg
taacacttggggaaaaaatgagagttaaaacgaaactttaactctcaaag
tataaaaataacccaacaaggtaggctttgatccctataataatatagat
caaatactgtccaaatgatgctcaattcttgagttttgatgacatctgat
aacatctgatgacatctgataaccaataatatttgatggctattctaatg
cctatattcaatggctatcttgtatatagttattcactatggacaaggac
atatttttctgatggagatgcaggaaaagccatgaaatagctggagtctg
aagaagacacatctcattagcatcagggtctaacagctttcttgctgttg
atggactatctaatgagctagggagtttatcaatgtaaacaggtcatttc
ttacttcaactacgtagagcacacaattatcccctttttatagagaagga
gaatagggcttaaagaaattaaatatgaattggcattctcacattcacag
gactttaaagtggtaatgttgaaattttcattctggataatctactcaaa
ggaagtactttcagtctaaggtaccccttagtcaacatttcttttttttt
ttttaataaatcattattttttaaatttttttattagatattttcttcat
ttacatttcaaatgctatcccaaaagtcccctataccctccctctgccct
gctcccctacccacccactcccacttcttggtcctggcattcccctgtac
cggggcatataaagtttgcaagaccaaggggcctctcttcccaatgatgg
ccgactagccatcttctgctacgtatgcagctagagacatgagctctggg
gatactgattagttcatattgttgttcccctataggtgcagaccccttca
gctccttgggcactttatctagctcctccattggggaccttgtgttccat
cctaaaagattactgtgagcatccacttatgtattttcaggcactggcat
agctttacaccatttccctttggaatagaagcagcctcaatagtctcccc
accaaaaagccc
gaattcataacttttgtaaacaatctcaccagaaattagtattttggaaa
acactggaaaaagaggaaggccaaaggctaaacgcggactgtgaaaattc
aattattctcagctcatttgctttgtgttaaataatttggttgccacatg
cctaaactaaaagtcacattactcagtatttacacagtgacttttctttc
ttcctcctcctttctttcttttctttctttctttctttctttctttcttt
ctttctttctttctttctttcatttttaatgtgtgagcatttggggaaat
tccaaaagttgttttttttgttgttgttgttttgttttttaagaaaaaaa
aaaaagaaagcaaacacggaaagaaacaacaaagtaagacaaaattccag
gaaaagaataattttaaatcagattttaaaagctttccaaactttttcag
tattccaggtgtatggtcccctgagggaccagacagctctgggtgaggcc
tgtgttccagcttcttcttcctctgacattcttcctttgtaaagagggtt
tccaactttaaggaaggcttagcatcaatcgtgacatgaccggtaggact
ggcaatatggtgtggatcaacctgccccaggtcgtttttaaagatgatgc
ttttatttttgttaaccttttaaaatgttactttaagagctgggagggaa
aaacaaaacaaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaca
aaaaaaaaaaaacaggctcaaggagctgacggcagtgagggaaatgtcca
tacttaatgaatgagctcagcctttggaaggacaggaagaatagaacaga
gagggctcctctccttggatttaatagttacaaggtattttaaagtatga
ctttatactgccctgcatgttgtatttagagggaaaggacagatgcttca
agagagagctgtgagaacagagagttagctgtcatcaaataagacattgg
caaaggctcgtctagtatctgcataacaggaaatctggagggagataagt
cctcggtgtatctcggtctgaatcaaaagttggaaacgggaggacctagt
gtccacaaaaataatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_165282831_165283951
seq2: B6Ng01-056O12.b_49_1160 (reverse)

seq1  GGGCTTTTTTTGGTTGGGAGACTATTGATGACTGCTTCTATTTCTATAGG  50
      ||||  |||||||| ||||||||||||| | ||||||||||| |   | |
seq2  GGGC--TTTTTGGTGGGGAGACTATTGA-GGCTGCTTCTATTCC--AAAG  45

seq1  GGAAATGGTTGTGAGGCTATGCCAGTGCCTGAAAATACATAAGTGGATGC  100
      |||||||| ||| | |||||||||||||||||||||||||||||||||||
seq2  GGAAATGG-TGTAAAGCTATGCCAGTGCCTGAAAATACATAAGTGGATGC  94

seq1  TCACAGTAATC-TATAGGATGGAACACAGGGTCCCCAATGGAGGAGCTAG  149
      ||||||||||| | |||||||||||||| |||||||||||||||||||||
seq2  TCACAGTAATCTTTTAGGATGGAACACAAGGTCCCCAATGGAGGAGCTAG  144

seq1  ATAAAGTGCCCAAGGAGCTGAAGGGGTCTGCAACCCTATAGGTGGAACAA  199
      ||||||||||||||||||||||||||||||||  |||||||| |||||||
seq2  ATAAAGTGCCCAAGGAGCTGAAGGGGTCTGCA--CCTATAGG-GGAACAA  191

seq1  CAATATGAACTAATCAGTATCCCCAGAGCTCATGTCTCTAGCTGCATACG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATGAACTAATCAGTATCCCCAGAGCTCATGTCTCTAGCTGCATACG  241

seq1  TAGCAGAAGATGGCCTAGTCGGCCATCATTGGGAAGAGAGGCCCCTTGGT  299
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAGCAGAAGATGG-CTAGTCGGCCATCATTGGGAAGAGAGGCCCCTTGGT  290

seq1  CTTGCAAACTTTATATGCCCCGGTACAGGGGAATGCCAGGACCAAGAAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAAACTTTATATGCCCCGGTACAGGGGAATGCCAGGACCAAGAAGT  340

seq1  GGGAGTGGGTGGGTAGGGGAGCAGGGCAGAGGGAGGGTATAGGGGACTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGGGTGGGTAGGGGAGCAGGGCAGAGGGAGGGTATAGGGGACTTT  390

seq1  TGGGATAGCATTTGAAATGTAAATGAAGAAAATATCTAATAAAAAAATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATAGCATTTGAAATGTAAATGAAGAAAATATCTAATAAAAAAATTT  440

seq1  AAAAAATAATGATTTATTAAAAAAAAAAAAAGAAATGTTGACTAAGGGGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAATGATTTATTAAAAAAAAAAAAAGAAATGTTGACTAAGGGGT  490

seq1  ACCTTAGACTGAAAGTACTTCCTTTGAGTAGATTATCCAGAATGAAAATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAGACTGAAAGTACTTCCTTTGAGTAGATTATCCAGAATGAAAATT  540

seq1  TCAACATTACCACTTTAAAGTCCTGTGAATGTGAGAATGCCAATTCATAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACATTACCACTTTAAAGTCCTGTGAATGTGAGAATGCCAATTCATAT  590

seq1  TTAATTTCTTTAAGCCCTATTCTCCTTCTCTATAAAAAGGGGATAATTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCTTTAAGCCCTATTCTCCTTCTCTATAAAAAGGGGATAATTGT  640

seq1  GTGCTCTACGTAGTTGAAGTAAGAAATGACCTGTTTACATTGATAAACTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCTACGTAGTTGAAGTAAGAAATGACCTGTTTACATTGATAAACTC  690

seq1  CCTAGCTCATTAGATAGTCCATCAACAGCAAGAAAGCTGTTAGACCCTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCTCATTAGATAGTCCATCAACAGCAAGAAAGCTGTTAGACCCTGA  740

seq1  TGCTAATGAGATGTGTCTTCTTCAGACTCCAGCTATTTCATGGCTTTTCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAATGAGATGTGTCTTCTTCAGACTCCAGCTATTTCATGGCTTTTCC  790

seq1  TGCATCTCCATCAGAAAAATATGTCCTTGTCCATAGTGAATAACTATATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTCCATCAGAAAAATATGTCCTTGTCCATAGTGAATAACTATATA  840

seq1  CAAGATAGCCATTGAATATAGGCATTAGAATAGCCATCAAATATTATTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATAGCCATTGAATATAGGCATTAGAATAGCCATCAAATATTATTGG  890

seq1  TTATCAGATGTCATCAGATGTTATCAGATGTCATCAAAACTCAAGAATTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGATGTCATCAGATGTTATCAGATGTCATCAAAACTCAAGAATTG  940

seq1  AGCATCATTTGGACAGTATTTGATCTATATTATTATAGGGATCAAAGCCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCATTTGGACAGTATTTGATCTATATTATTATAGGGATCAAAGCCT  990

seq1  ACCTTGTTGGGTTATTTTTATACTTTGAGAGTTAAAGTTTCGTTTTAACT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGTTGGGTTATTTTTATACTTTGAGAGTTAAAGTTTCGTTTTAACT  1040

seq1  CTCATTTTTTCCCCAAGTGTTACACTAGATATAACACACACAGATGTTAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTTTTCCCCAAGTGTTACACTAGATATAACACACACAGATGTTAT  1090

seq1  TCGGTTGTCTCTGAATGAATTC  1121
      ||||||||||||||||||||||
seq2  TCGGTTGTCTCTGAATGAATTC  1112

seq1: chr1_165199637_165200789
seq2: B6Ng01-056O12.g_70_1187

seq1  GAATTCATAACTTTTGTAAACAATCTCACCAGAAATTAGTATTTTGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAACTTTTGTAAACAATCTCACCAGAAATTAGTATTTTGGAAA  50

seq1  ACACTGGAAAAAGAGGAAGGCCAAAGGCTAAACGCGGACTGTGAAAATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGAAAAAGAGGAAGGCCAAAGGCTAAACGCGGACTGTGAAAATTC  100

seq1  AATTATTCTCAGCTCATTTGCTTTGTGTTAAATAATTTGGTTGCCACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTCTCAGCTCATTTGCTTTGTGTTAAATAATTTGGTTGCCACATG  150

seq1  CCTAAACTAAAAGTCACATTACTCAGTATTTACACAGTGACTTTTCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACTAAAAGTCACATTACTCAGTATTTACACAGTGACTTTTCTTTC  200

seq1  TTCCTCCTCCTTTCTTTCTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTCCTTTCTTTCTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT  250

seq1  CTTTCTTTCTTTCTTTCTTTCATTTTTAATGTGTGAGCATTTGGGGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCATTTTTAATGTGTGAGCATTTGGGGAAAT  300

seq1  TCCAAAAGTTGTTTTTTTTGTTGTTGTTGTTTTGTTTTTTAAGAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAGTTGTTTTTTTTGTTGTTGTTGTTTTGTTTTTTAAGAAAAAAA  350

seq1  AAAAAGAAAGCAAACACGGAAAGAAACAACAAAGTAAGACAAAATTCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAGCAAACACGGAAAGAAACAACAAAGTAAGACAAAATTCCAG  400

seq1  GAAAAGAATAATTTTAAATCAGATTTTAAAAGCTTTCCAAACTTTTTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAATAATTTTAAATCAGATTTTAAAAGCTTTCCAAACTTTTTCAG  450

seq1  TATTCCAGGTGTATGGTCCCCTGAGGGACCAGACAGCTCTGGGTGAGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCAGGTGTATGGTCCCCTGAGGGACCAGACAGCTCTGGGTGAGGCC  500

seq1  TGTGTTCCAGCTTCTTCTTCCTCTGACATTCTTCCTTTGTAAAGAGGGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCCAGCTTCTTCTTCCTCTGACATTCTTCCTTTGTAAAGAGGGTT  550

seq1  TCCAACTTTAAGGAAGGCTTAGCATCAATCGTGACATGACCGGTAGGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACTTTAAGGAAGGCTTAGCATCAATCGTGACATGACCGGTAGGACT  600

seq1  GGCAATATGGTGTGGATCAACCTGCCCCAGGTCGTTTTTAAAGATGATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATATGGTGTGGATCAACCTGCCCCAGGTCGTTTTTAAAGATGATGC  650

seq1  TTTTATTTTTGTTAACCTTTTAAAATGTTACTTTAAGAGCTGGGAGGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTTGTTAACCTTTTAAAATGTTACTTTAAGAGCTGGGAGGGAA  700

seq1  AAACAAAACAAAAACAAAACAAAACAAAACAAAACAAAACAAAACAAAAC  750
      |||||||||||||||||||||||||||||||||||||||||||||||   
seq2  AAACAAAACAAAAACAAAACAAAACAAAACAAAACAAAACAAAACAA---  747

seq1  AAAAAAAAAAAAAAACAGGCTCAAGGAGCTGACGGCAGTGAGGGAAATGT  800
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAAAAAAAACAGGCTCAAGGAGCTGACGGCAGTGAGGGAAATGT  797

seq1  CCATACTTAATGAATGAGCTCAGCCTTTGGAAGGACAGGAAGAATAGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACTTAATGAATGAGCTCAGCCTTTGGAAGGACAGGAAGAATAGAAC  847

seq1  AGAGAGGGCTCCTCTCCTTGGATTTAATAGTTACAAGGTATTTTAAAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGGCTCCTCTCCTTGGATTTAATAGTTACAAGGTATTTTAAAGTA  897

seq1  TGAC-TTATACTGCCCTGCATGTTGTTATTTTAGAGGGAAAGGACAAGAT  949
      |||| |||||||||||||||||||||   |||||||||||||||| ||||
seq2  TGACTTTATACTGCCCTGCATGTTGT--ATTTAGAGGGAAAGGAC-AGAT  944

seq1  GCTTCAAGGAGAGAAGCTGTGGAGAACAGAGAGTTAGCTGTCCATCACAA  999
      ||||||| ||||| |||||| |||||||||||||||||||| ||||| ||
seq2  GCTTCAA-GAGAG-AGCTGT-GAGAACAGAGAGTTAGCTGT-CATCA-AA  989

seq1  TAAGACATTGGGCAAAGGGCTCCGTCTCAGTAATCTGCAGTAAACAAGGA  1049
      ||||||||| |||||| |||| ||||| ||| ||||||| |||   ||||
seq2  TAAGACATT-GGCAAA-GGCT-CGTCT-AGT-ATCTGCA-TAA--CAGGA  1031

seq1  AATCTGGAGGGGAGATTAAGTCCCTCCGGGTGGTTACTCTGGTCTTGGAT  1099
      |||||||| |||||| ||||| ||||  ||| ||  ||| |||||  || 
seq2  AATCTGGA-GGGAGA-TAAGT-CCTC--GGT-GTATCTC-GGTCT--GA-  1071

seq1  ACCAAAAGGCTTGGAAGACGGGAGGACGCAGATGTGCCCAACATAAATAA  1149
      | ||||||  |||||| ||||||||||  || |||   | ||| ||||||
seq2  ATCAAAAG--TTGGAA-ACGGGAGGACCTAG-TGT---CCACAAAAATAA  1114

seq1  TCTG  1153
      ||||
seq2  TCTG  1118