BAC Information

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BAC

Clone NameB6Ng01-056P13
Chromosome1 (Build37)11 (Build37)
Map Location 133,990,781 - 133,990,9754,911,672 - 4,912,045
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4, Mfsd4
Downstream genePctk3, LOC100042221, Lemd1, EG638532, Klhdc8a, Nuak2, Tmcc2, Ripk5, Rbbp5, Tmem81, Cntn2, Nfasc, Lrrn2, Mdm4, LOC638636, Pik3c2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056P13.bB6Ng01-056P13.g
ACCDH878975DH878976
length219368
definitionDH878975|Mus musculus domesticus DNA, BAC clone: B6Ng01-056P13, 5' end.DH878976|Mus musculus domesticus DNA, BAC clone: B6Ng01-056P13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(133,990,781 - 133,990,975)(4,911,672 - 4,912,045)
sequence
atccattttaaaaaatgtactgggctggagagatggctcagtgggtaaga
gcacccgactgctctcccgaaggtccagagttcaaatcccagcaaccaca
tggtggctcacaaccatccacaacaagatcctactccgtattgtggaaag
actgaaaacaggtactttgttattttaataaataaatctttaaaacaaaa
aaaaagaactgtgaagatt
tcttacatactctcagctgtaaagtgtccatctcagagcctggcactctg
ttctgcatcaaggacagctgctgatattaattagccacatgaagaattct
agacttaggttctttttcgtgagtctctttgggtggggtgagatagggct
gttatgtggggaaagggatgagaaaactaagtagattcctaatgagaaaa
aaagatgagggtttgttttttttaaatcatgaacacactcacactcacac
acacagtaaacacagttgcctgaaaatgatgacctagcaaagcctgagca
gggactcactaaggacattgcttaacagggccaggaaactctgtagatcc
tgtggttcttgtttatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_133990781_133990975
seq2: B6Ng01-056P13.b_78_267 (reverse)

seq1  CAGTGCTTTTTTTTTTTTTTAAAGATTTATTTATTATTAAATCTAAGTAC  50
      |||| |||||||||| ||||||||||||||||||||  | | | ||||||
seq2  CAGTTCTTTTTTTTTGTTTTAAAGATTTATTTATTAAAATAACAAAGTAC  50

seq1  ACTGTAGCTGTCTTCAG-ATGCACAGAAGAGGGCGTCAGGTCTCATTACG  99
             |||| |||||  |   || || | || ||  | |||  ||  |
seq2  -------CTGTTTTCAGTCTTTCCACAATACGGAGTAGGATCTTGTTGTG  93

seq1  GATGGTTGTTAGCCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTTC  149
      ||||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  GATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTC  143

seq1  GGAAGAGCAGTC-GGTGCTCTTAACCACTGAGCCATCTCTCCAGCCC  195
      || ||||||||| |||||||||| |||||||||||||||||||||||
seq2  GGGAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCTCCAGCCC  190

seq1: chr11_4911672_4912045
seq2: B6Ng01-056P13.g_71_444 (reverse)

seq1  TCATAAACACGAACCACAGGATCTACAGAGTTTCCTGGCCCTGTTAAGCA  50
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCATAAACAAGAACCACAGGATCTACAGAGTTTCCTGGCCCTGTTAAGCA  50

seq1  ATGTCCTTAGTGAGTCCCTGCTCAGGCTTTGCTAGGTCATCATTTTCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTTAGTGAGTCCCTGCTCAGGCTTTGCTAGGTCATCATTTTCAGG  100

seq1  CAACTGTGTTTACTGTGTGTGTGTGTGTGTGTGTGTTCATGATTTAAAAA  150
      ||||||||||||||||||||||| ||||| ||||||||||||||||||||
seq2  CAACTGTGTTTACTGTGTGTGTGAGTGTGAGTGTGTTCATGATTTAAAAA  150

seq1  AAACAAACCCTCATCTTTTTTTCTCATTAGGAATCTACTTAGTTTTCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACCCTCATCTTTTTTTCTCATTAGGAATCTACTTAGTTTTCTCA  200

seq1  TCCCTTTCCCCACATAACAGCCCTATCTCACCCCACCCAAAGAGACTCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCCCCACATAACAGCCCTATCTCACCCCACCCAAAGAGACTCAC  250

seq1  GAAAAAGAACCTAAGTCTAGAATTCTTCATGTGGCTAATTAATATCAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGAACCTAAGTCTAGAATTCTTCATGTGGCTAATTAATATCAGCA  300

seq1  GCTGTCCTTGATGCAGAACAGAGTGCCAGGCTCTGAGATGGACACTTTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTTGATGCAGAACAGAGTGCCAGGCTCTGAGATGGACACTTTAC  350

seq1  AGCTGAGAGTAAGTGAGAGAATTC  374
      ||||||||||| || |||||||||
seq2  AGCTGAGAGTATGTAAGAGAATTC  374