BAC Information

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BAC

Clone NameB6Ng01-057B16
Chromosome1 (Build37)
Map Location 87,980,875 - 87,981,977
singlet/doubletsinglet
Overlap genePsmd1
Upstream geneLOC100040213, LOC100039794, EG665338, Sp110, Sp140, Sp100, A630001G21Rik, Cab39, Itm2c, 4933407L21Rik, Gpr55, Spata3, 2810459M11Rik
Downstream geneHtr2b, Armc9, B3gnt7, EG383538, Ncl, Snord82, Nmur1, 1700019O17Rik, LOC100040414, Ptma, Pde6d, Cops7b, Nppc, 4930429A22Rik, EG620213, LOC208256
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057B16.g
ACCDH879073
length1,089
definitionDH879073|Mus musculus domesticus DNA, BAC clone: B6Ng01-057B16, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagctccaagggatctgacacctcttctggcctccaaatgcaacc
atacacaccccatccccagacatacaggaatatagacattttaaaaaatt
gcaccaaggtagaattctccaagcatatttacctaagaaactggtcactg
gtagtaccacagtgcatgaatgagtttgctattacagttgctgtatgaca
cacagaatttcgtactgcatcctacaaaaacaaacgcagagacttcttta
tcactggccaagtatttatacatacattgctcacatactctattctgcag
caaaatcagaaaacaattgaaatgagatttaacatatgaatcttgggaca
tctctttatgtaaagataaaatagctagtctgtaaaaataagacaaagag
ttttatttgcagtattaacttaagatcacggtcagacttatgtttgtttt
atggcacaggtttgatgtcacccaaacaggcctgaacttgcttgagctcc
tgacactctgatgtcaactccagcctgtggagtctaggagtatcacaacc
cagctcaattacagatctgaagtgtgaattcagatttcctactcccctct
ttctaaagagtctaactattcagttaactactcagacatttctatttctc
ctcagcatcttgcctgatgtctccaaggtgttggagtaacttaagtagca
atgctataatttttctcacctgtacctctgacagtcaacaaattatatac
gcatcaatgtaggaatgtatttacagtactggggatataacccaaggcct
tttacattccaggcaagctctctactcttgaactacctctggagccctaa
caaacttatacatttttgaatctgtatctttttgctatttgtaatcatgt
acttaagtttcagaggcactatatatatgttcataaatcaacactgttta
gtcactgaatagcatgtggcttataaggaagagcaatgtctctaggaggc
atactgagtaggaagaagaaagattttcaatgctattttctttttcttat
gacttttactctctagaaaaggttatttgtgcactacaa
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_87980875_87981977
seq2: B6Ng01-057B16.g_67_1155 (reverse)

seq1  TTGTAGTGCACTAAATAAACTTTTTCTTAGGAGTAAAATGTTTCATATGA  50
      ||||||||||| |||| ||| ||||||   ||||||||    ||||| ||
seq2  TTGTAGTGCAC-AAAT-AACCTTTTCTAGAGAGTAAAA---GTCATAAGA  45

seq1  AAAAGATAAATAGCATTTGAAAAATCTTTCTTCTTTCTTACTCAGTATGC  100
      |||||| ||||||||||   ||||||||||||| ||| ||||||||||||
seq2  AAAAGA-AAATAGCATT--GAAAATCTTTCTTC-TTCCTACTCAGTATGC  91

seq1  CTTCCTAGAGACATTTGCTCTTTCCTTAT-AGCCACATGCTATTCAGTGA  149
      | ||||||||||| |||||| |||||||| ||||||||||||||||||||
seq2  C-TCCTAGAGACA-TTGCTC-TTCCTTATAAGCCACATGCTATTCAGTGA  138

seq1  CTAAACAGTGTTTGATTTATGAACATATATATAGTGCCTTCTGAAACCTT  199
      |||||||||| ||||||||||||||||||||||||||| ||||||| |||
seq2  CTAAACAGTG-TTGATTTATGAACATATATATAGTGCC-TCTGAAA-CTT  185

seq1  AAGTACATGATTACAAATAGCAAAAAGATACAGATTCAAAAATGTATAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACATGATTACAAATAGCAAAAAGATACAGATTCAAAAATGTATAAG  235

seq1  TTTGTTAGGGCTCCAGAGGTAGTTCAAGAGTAGAGAGCTTGCCTGGAATG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAGGGCTCCAGAGGTAGTTCAAGAGTAGAGAGCTTGCCTGGAATG  285

seq1  TAAAAGGCCTTGGGTTATATCCCCAGTACTGTAAATACATTCCTACATTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGCCTTGGGTTATATCCCCAGTACTGTAAATACATTCCTACATTG  335

seq1  ATGCGTATATAATTTGTTGACTGTCAGAGGTACAGGTGAGAAAAATTATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCGTATATAATTTGTTGACTGTCAGAGGTACAGGTGAGAAAAATTATA  385

seq1  GCATTGCTACTTAAGTTACTCCAACACCTTGGAGACATCAGGCAAGATGC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGCTACTTAAGTTACTCCAACACCTTGGAGACATCAGGCAAGATGC  435

seq1  TGAGGAGAAATAGAAATGTCTGAGTAGTTAACTGAATAGTTAGACTCTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGAAATAGAAATGTCTGAGTAGTTAACTGAATAGTTAGACTCTTT  485

seq1  AGAAAGAGGGGAGTAGGAAATCTGAATTCACACTTCAGATCTGTAATTGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGGGGAGTAGGAAATCTGAATTCACACTTCAGATCTGTAATTGA  535

seq1  GCTGGGTTGTGATACTCCTAGACTCCACAGGCTGGAGTTGACATCAGAGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGTTGTGATACTCCTAGACTCCACAGGCTGGAGTTGACATCAGAGT  585

seq1  GTCAGGAGCTCAAGCAAGTTCAGGCCTGTTTGGGTGACATCAAACCTGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAGCTCAAGCAAGTTCAGGCCTGTTTGGGTGACATCAAACCTGTG  635

seq1  CCATAAAACAAACATAAGTCTGACCGTGATCTTAAGTTAATACTGCAAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAAACAAACATAAGTCTGACCGTGATCTTAAGTTAATACTGCAAAT  685

seq1  AAAACTCTTTGTCTTATTTTTACAGACTAGCTATTTTATCTTTACATAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCTTTGTCTTATTTTTACAGACTAGCTATTTTATCTTTACATAAA  735

seq1  GAGATGTCCCAAGATTCATATGTTAAATCTCATTTCAATTGTTTTCTGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTCCCAAGATTCATATGTTAAATCTCATTTCAATTGTTTTCTGAT  785

seq1  TTTGCTGCAGAATAGAGTATGTGAGCAATGTATGTATAAATACTTGGCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGCAGAATAGAGTATGTGAGCAATGTATGTATAAATACTTGGCCA  835

seq1  GTGATAAAGAAGTCTCTGCGTTTGTTTTTGTAGGATGCAGTACGAAATTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAAAGAAGTCTCTGCGTTTGTTTTTGTAGGATGCAGTACGAAATTC  885

seq1  TGTGTGTCATACAGCAACTGTAATAGCAAACTCATTCATGCACTGTGGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTCATACAGCAACTGTAATAGCAAACTCATTCATGCACTGTGGTA  935

seq1  CTACCAGTGACCAGTTTCTTAGGTAAATATGCTTGGAGAATTCTACCTTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCAGTGACCAGTTTCTTAGGTAAATATGCTTGGAGAATTCTACCTTG  985

seq1  GTGCAATTTTTTAAAATGTCTATATTCCTGTATGTCTGGGGATGGGGTGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAATTTTTTAAAATGTCTATATTCCTGTATGTCTGGGGATGGGGTGT  1035

seq1  GTATGGTTGCATTTGGAGGCCAGAAGAGGTGTCAGATCCCTTGGAGCTGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGTTGCATTTGGAGGCCAGAAGAGGTGTCAGATCCCTTGGAGCTGA  1085

seq1  ATTC  1103
      ||||
seq2  ATTC  1089