BAC Information

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BAC

Clone NameB6Ng01-057F18
Chromosome1 (Build37)19 (Build37)
Map Location 53,456,586 - 53,457,25449,054,323 - 49,054,889
singlet/doubletsingletsinglet
Overlap geneLOC100042162
Upstream geneNab1, LOC546736, Gm553, LOC100042094, EG433305, 5330401P04Rik, 2210010L05Rik, Inpp1, Hibch, 1700019D03Rik, Gdf8, 1700019A02Rik, Pms1, LOC671024, Ormdl1, Osgepl1, Asnsd1, EG627858, EG627866
Downstream geneDnahc7, Stk17b, Hecw2, 4930511H11Rik, Gtf3c3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057F18.bB6Ng01-057F18.g
ACCDH879252DH879253
length819957
definitionDH879252|Mus musculus domesticus DNA, BAC clone: B6Ng01-057F18, 5' end.DH879253|Mus musculus domesticus DNA, BAC clone: B6Ng01-057F18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(53,456,586 - 53,457,254)(49,054,323 - 49,054,889)
sequence
gaattcagcaaagcatagtgaactaacaccctgatacacatctttaaaag
aaagtcatattctaagaagtctatctcatataagagacaatccacctcac
tagatgcacagatttcaacatatacacaagaaacttcaaatagtttaaaa
taataatctcctaaaaaataactccctagtgacagattccaaagatactg
aggttgatgaaatacctgatagattctaaagaatggttgtgggaaagctt
agtgataagtctggggctaggggtggggtttaggaaaattggtatagtgt
tttcttagcatgcacaaagccctgggttcaattctcaataccacacaaag
ccaggcatggtggcaatagacctgtaacatttggacgatggaggtaggat
gctcaggaattcaaggtcaccctcagcatggagttcaaattcagcttgag
ctgtatggaaccctgtatcatgcaaagaaaatctcaatgacaaatgagat
tcaagaagacacacagacacacacacacaaattaggaagacaatacagat
atgaatgaggaactatcaaacacagaaagaaagattgctgtgagttcaag
gccagcctgggctacatagtgagagtctctcttgaaagtcaagaaaatgt
aggtgcaagtctccaaatctcccggaggtcatgagttcaatcccagcaac
cacatggtggctcacaactatccgtaatgagaacaaaacaacacaacaac
agaaaactatgggccagagcgagcagagacccagagctagtgggagaagg
aagagagaaaatggaaaaa
gaattcctgatctttccaagccttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcaggtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcttatattaaacc
atccctgcatccctggaataaaacctacttggtcagaatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctatcttgtgaaaaagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggcttttttttggctgggagactattaataactgcttctatttc
tttaggtgatatgggactgtttagatggtcaacttgatcctgactcaact
ttggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcc
agttttgttgaggataaccttttgtagaaggatctgatggtgttttggat
ttcttcaggatctgttgttatgtctcccttttcatttctgattttgttaa
tttaggattttgtccctgtgccctttagtgagtctagctaagggtttatc
tatcttgttgattttctcaaagaaccaactcctcgttttggttaattctt
tgaatagttcttcttgtttccacttggttgatttcacccctgagtttgat
tatttcctgccgtctactcctcttgggtgaatttgcttctttttttctag
agctttatacgtgttgtcaagctgctagaagtgccctctcccgtttctct
tggaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_53456586_53457254
seq2: B6Ng01-057F18.b_230_780

seq1  TTCTAAAGATACTGGGGTTGATGAAATACCTGATAGATTCAAAAGAATGG  50
      ||| |||||||||| ||||||||||||||||||||||||| |||||||||
seq2  TTCCAAAGATACTGAGGTTGATGAAATACCTGATAGATTCTAAAGAATGG  50

seq1  TTGTTGAAAAGCTTAGTGATATGTCTGGGGTTAGGGGTGGGGTTTAGGAG  100
      |||| | |||||||||||||| |||||||| |||||||||||||||||| 
seq2  TTGTGGGAAAGCTTAGTGATAAGTCTGGGGCTAGGGGTGGGGTTTAGGAA  100

seq1  AGTTGGTACAGTGTTTTCTTAGCATGCATAAAGCCCTGGGTTCAATCCTC  150
      | |||||| ||||||||||||||||||| ||||||||||||||||| |||
seq2  AATTGGTATAGTGTTTTCTTAGCATGCACAAAGCCCTGGGTTCAATTCTC  150

seq1  AATACCACACAAAGCCAGGCTTGGTAGCAATAGACCTGTAACTCTAACAT  200
      |||||||||||||||||||| |||| ||||||||||||      ||||||
seq2  AATACCACACAAAGCCAGGCATGGTGGCAATAGACCTG------TAACAT  194

seq1  TTGGATGATGGAGGTAGGAGACTCAGGAATTCAAGATCACCCTCAGCATG  250
      ||||| |||||||||||||  |||||||||||||| ||||||||||||||
seq2  TTGGACGATGGAGGTAGGATGCTCAGGAATTCAAGGTCACCCTCAGCATG  244

seq1  GAGTTCAAGTTCAGCTTGAGCTGTATGAAACCCTATATCACACAAAGAAA  300
      |||||||| |||||||||||||||||| |||||| |||||  ||||||||
seq2  GAGTTCAAATTCAGCTTGAGCTGTATGGAACCCTGTATCATGCAAAGAAA  294

seq1  ATCTTAGTAACAAATGAAATTCAAGAATACACACACACACACACACACAC  350
      |||| | | |||||||| ||||||||| ||||||| ||||||||||||| 
seq2  ATCTCAATGACAAATGAGATTCAAGAAGACACACAGACACACACACACA-  343

seq1  ACACACACACACACACACACACACACAATTAGGAAGACAATACAGATATG  400
                                ||||||||||||||||||||||||
seq2  --------------------------AATTAGGAAGACAATACAGATATG  367

seq1  AATGAGGAACTTATCAAACACAGAAAGAAAGATTGCTGTGAGTTCAAGGC  450
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGAAC-TATCAAACACAGAAAGAAAGATTGCTGTGAGTTCAAGGC  416

seq1  CAGCCTGGGCTACACAGTAAGAGTCTCTCTTGAAAGTCAAAGAAAATGTA  500
      |||||||||||||| ||| ||||||||||||||||||| |||||||||||
seq2  CAGCCTGGGCTACATAGTGAGAGTCTCTCTTGAAAGTC-AAGAAAATGTA  465

seq1  GGTGCAAGTCTCCAAATCAGACTAGCTTAAGCAGTTATACTAAGAATATT  550
      ||||||||||||||||||                                
seq2  GGTGCAAGTCTCCAAATC--------------------------------  483

seq1  GATTTTTGGGCTGGTGAGATGGCTCATCTGTTAAGAGCACTGACTGTTTT  600
                                                       |
seq2  -------------------------------------------------T  484

seq1  TCTGGAGGTCATGAGTTCAAATCCCAGCAACCACATGGTGGCTCACATCC  650
       | ||||||||||||||| |||||||||||||||||||||||||||| | 
seq2  CCCGGAGGTCATGAGTTC-AATCCCAGCAACCACATGGTGGCTCACAACT  533

seq1  ATCTGTAATGAGAAACAAA  669
      ||| |||||||| ||||||
seq2  ATCCGTAATGAG-AACAAA  551

seq1: chr19_49054323_49054889
seq2: B6Ng01-057F18.g_458_1023 (reverse)

seq1  GCCTCCAAGAAGAAACGGGAGACAGCACATACTAGCAGCTTGACAACACA  50
      ||||||||| ||||||||||||  |||| | |||||||||||||||||| 
seq2  GCCTCCAAG-AGAAACGGGAGAGGGCAC-TTCTAGCAGCTTGACAACACG  48

seq1  TCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCAAGAGGAGTAGAC  100
      | | ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAT-AAAGCTCTAGAAAAAAA-GAAGCAAATTCACCCAAGAGGAGTAGAC  96

seq1  TGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGA  150
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAAATAATCAAACTCAGGGGTGAAATCAACCAAGTGGAAACAAGA  146

seq1  AGAACTATTCAAAGAATTAACC-AAACGAGGAGTTGGTTCTTTGAGAAAA  199
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGAACTATTCAAAGAATTAACCAAAACGAGGAGTTGGTTCTTTGAGAAAA  196

seq1  TCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAGATAGATAAACCCTTAGCTAGACTCACTAAAGGGCACAGGGAC  246

seq1  AAAATCCT-AATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAG  298
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCTAAATTAACAAAATCAGAAATGAAAAGGGAGACATAACAACAG  296

seq1  ATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGTTATAC  348
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  ATCCTGAAGAAATCCAAAACACCATCAGATCCTTCTACAAAAGGTTATCC  346

seq1  TCAACAAAACTGGAAAACCTGGATGAAATGGACAAATTTCTGGACAGATA  398
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TCAACAAAACTGGAAAACCTGGACGAAATGGACAAATTTCTGGACAGATA  396

seq1  CCAGGTACCAAAGTTGAGTCAGGATCAAGTTGACCATCTAAACAGTCCCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTACCAAAGTTGAGTCAGGATCAAGTTGACCATCTAAACAGTCCCA  446

seq1  TATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCC-AAAAA  497
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TATCACCTAAAGAAATAGAAGCAGTTATTAATAGTCTCCCAGCCAAAAAA  496

seq1  AAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCAGGACCAGACGGGTTTAGTGCAGAGTTCTATCAGACCTTCAAAG  546

seq1  AAGATCTAATTCCAGTTCTG  567
      ||||||||||||||||||||
seq2  AAGATCTAATTCCAGTTCTG  566