BAC Information

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BAC

Clone NameB6Ng01-057G08
Chromosome1 (Build37)
Map Location 84,116,933 - 84,231,839
singlet/doubletdoublet
Overlap gene5033414K04Rik
Upstream geneLOC100039575, 4930563E19Rik, EG621614, 4930544G21Rik, EG622958
Downstream geneLOC100039638, Dner, Trip12, Fbxo36, Slc16a14, LOC100039695, EG665317, LOC100039723, A530032D15Rik, LOC100039742, LOC100040158, LOC621835, EG665378
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057G08.bB6Ng01-057G08.g
ACCDH879278DH879279
length678738
definitionDH879278|Mus musculus domesticus DNA, BAC clone: B6Ng01-057G08, 5' end.DH879279|Mus musculus domesticus DNA, BAC clone: B6Ng01-057G08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,116,933 - 84,117,610)(84,231,029 - 84,231,839)
sequence
gaattcttctgtctctacgtggtatacacacacacacatacacaacacat
atacacatacactcaagtatatacacatacaagaataatttttacaaata
cttttttttaatgaagtaatattttttccttttctttttttaaagggggg
ggggtgatgtcttacttaaggagcaaggaagctcagtactaggaggaaat
aaatattaatatttatctacctcataatcatttgttgtcaagggctactg
acaacaggactggttctctaaggtagagtaggagcatccatcctcacatc
aggaccacactccctccaggagtctcaagacagtttagaaggaggccaga
agaccatgttcatctttgtaacccttggatccagtttctttaatgtttag
cttctttgttcctagtgtgatggtgagctgattcatttaatgactagccc
ttggcaggactgacaacttctgaagatacactgagagtcagatgattcaa
actaactaagagaatagaaggatatgtaaggacatcgttttacatccaag
agtaaagggctaagctacaacagtatcatcctccaagcattgcagctgtg
atgaactccagtggccatagttccctctcctctaagtgtgacagcaggag
agccaatcaccttgaagatatgactcac
gaattctggaataggcattctgtatctagaatatgcagatgcaatggtgg
acacatatattatgaaatgtatcatgggggactcttaccaaagtttggga
gcaccagcgtaattataagaattcttctttaccataaaactccaagtggt
cccaaagccacacaaccttgaagttatttatgtctctacttaggcaggga
ggtagccctaggcaagtatctcagagtgcctgatctccactgtctataaa
attggatctatactttctttgaagggctagagagcatataagtcatatgt
aagtttcctggaagatattaagcaaggggtttctccgtgacatgatcaat
gtgatggaagataagacatactcaaataatgacttatctccagggtgaat
acatcccacaaaaatgaatcttcttcgaggacaatggtaccctttgacca
caaaaagtacaataaaaggccaatttggggcatgagtgactctcccataa
gtcaaaggggagcgcttggttctgaggtcactgagttagaggtgtgtgct
gcatttgaaacagacctttgcctatttgtgcgttggctttattggtttca
ctggctaccaatggaagcttacagcagggccttctgatccagtttccatg
aggaaagagatggacaggggtgcaagcattttgttccttgtcctgttttg
gcttctgccatggataaagactacctgacatgggctta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_84116933_84117610
seq2: B6Ng01-057G08.b_47_724

seq1  GAATTCTTCTGTCTCTACGTGGTATACACACACACACATACACAACACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGTCTCTACGTGGTATACACACACACACATACACAACACAT  50

seq1  ATACACATACACTCAAGTATATACACATACAAGAATAATTTTTACAAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATACACTCAAGTATATACACATACAAGAATAATTTTTACAAATA  100

seq1  CTTTTTTTTAATGAAGTAATATTTTTTCCTTTTCTTTTTTTAAAGGGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTAATGAAGTAATATTTTTTCCTTTTCTTTTTTTAAAGGGGGG  150

seq1  GGGGTGATGTCTTACTTAAGGAGCAAGGAAGCTCAGTACTAGGAGGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGATGTCTTACTTAAGGAGCAAGGAAGCTCAGTACTAGGAGGAAAT  200

seq1  AAATATTAATATTTATCTACCTCATAATCATTTGTTGTCAAGGGCTACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTAATATTTATCTACCTCATAATCATTTGTTGTCAAGGGCTACTG  250

seq1  ACAACAGGACTGGTTCTCTAAGGTAGAGTAGGAGCATCCATCCTCACATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGGACTGGTTCTCTAAGGTAGAGTAGGAGCATCCATCCTCACATC  300

seq1  AGGACCACACTCCCTCCAGGAGTCTCAAGACAGTTTAGAAGGAGGCCAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCACACTCCCTCCAGGAGTCTCAAGACAGTTTAGAAGGAGGCCAGA  350

seq1  AGACCATGTTCATCTTTGTAACCCTTGGATCCAGTTTCTTTAATGTTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATGTTCATCTTTGTAACCCTTGGATCCAGTTTCTTTAATGTTTAG  400

seq1  CTTCTTTGTTCCTAGTGTGATGGTGAGCTGATTCATTTAATGACTAGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTGTTCCTAGTGTGATGGTGAGCTGATTCATTTAATGACTAGCCC  450

seq1  TTGGCAGGACTGACAACTTCTGAAGATACACTGAGAGTCAGATGATTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGGACTGACAACTTCTGAAGATACACTGAGAGTCAGATGATTCAA  500

seq1  ACTAACTAAGAGAATAGAAGGATATGTAAGGACATCGTTTTACATCCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACTAAGAGAATAGAAGGATATGTAAGGACATCGTTTTACATCCAAG  550

seq1  AGTAAAGGGCTAAGCTACAACAGTATCATCCTCCAAGCATTGCAGCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGGGCTAAGCTACAACAGTATCATCCTCCAAGCATTGCAGCTGTG  600

seq1  ATGAACTCCAGTGGCCATAGTTCCCTCTCCTCTAAGTGTGACAGCAGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTCCAGTGGCCATAGTTCCCTCTCCTCTAAGTGTGACAGCAGGAG  650

seq1  AGCCAATCACCTTGAAGATATGACTCAC  678
      ||||||||||||||||||||||||||||
seq2  AGCCAATCACCTTGAAGATATGACTCAC  678

seq1: chr1_84231029_84231839
seq2: B6Ng01-057G08.g_70_807 (reverse)

seq1  TAAGCATCTTACTGATTTGTTTCTGTAGCTCCCTTCAACATTCCTAACAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCATGGAAGCCTTGCGTGGAGAGTATCAG-CCATGTCAGGTAGTC-TTAT  98
                               | || ||||||||||||||| ||||
seq2  -------------------------TAAGCCCATGTCAGGTAGTCTTTAT  25

seq1  CCATGGCAGAAGCCAAAACAGGAACAAGGAACAAAATGCTTGCACCCCTG  148
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCATGGCAGAAGCCAAAACAGG-ACAAGGAACAAAATGCTTGCACCCCTG  74

seq1  TCCATCTCTTTCCTCATGGAAACTGGATCAGAAGGCCCTGCTGTAAGCTT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTCTTTCCTCATGGAAACTGGATCAGAAGGCCCTGCTGTAAGCTT  124

seq1  CCATTGGTAGCCAGTGAAACCAATAAAGCCAACGCACAAATAGGC-AAGG  247
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CCATTGGTAGCCAGTGAAACCAATAAAGCCAACGCACAAATAGGCAAAGG  174

seq1  TCTGTTTCAAATGCAGCACACACCTCTAACTCAGTGACCTCAGAACCAAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTCAAATGCAGCACACACCTCTAACTCAGTGACCTCAGAACCAAG  224

seq1  CGCTCCCCTTTGACTTATGGGAGAGTCACTCATGCCCCAAATTGGCCTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCCCCTTTGACTTATGGGAGAGTCACTCATGCCCCAAATTGGCCTTT  274

seq1  TATTGTACTTTTTGTGGTCAAAGGGTACCATTGTCCTCGAAGAAGATTCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTACTTTTTGTGGTCAAAGGGTACCATTGTCCTCGAAGAAGATTCA  324

seq1  TTTTTGTGGGATGTATTCACCCTGGAGATAAGTCATTATTTGAGTATGTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTGGGATGTATTCACCCTGGAGATAAGTCATTATTTGAGTATGTC  374

seq1  TTATCTTCCATCACATTGATCATGTCACGGAGAAACCCCTTGCTTAATAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTCCATCACATTGATCATGTCACGGAGAAACCCCTTGCTTAATAT  424

seq1  CTTCCAGGAAACTTACATATGACTTATATGCTCTCTAGCCCTTCAAAGAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGGAAACTTACATATGACTTATATGCTCTCTAGCCCTTCAAAGAA  474

seq1  AGTATAGATCCAATTTTATAGACAGTGGAGATCAGGCACTCTGAGATACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAGATCCAATTTTATAGACAGTGGAGATCAGGCACTCTGAGATACT  524

seq1  TGCCTAGGGCTACCTCCCTGCCTAAGTAGAGACATAAATAACTTCAAGGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGGGCTACCTCCCTGCCTAAGTAGAGACATAAATAACTTCAAGGT  574

seq1  TGTGTGGCTTTGGGACCACTTGGAGTTTTATGGTAAAGAAGAATTCTTAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGCTTTGGGACCACTTGGAGTTTTATGGTAAAGAAGAATTCTTAT  624

seq1  AATTACGCTGGTGCTCCCAAACTTTGGTAAGAGTCCCCCATGATACATTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACGCTGGTGCTCCCAAACTTTGGTAAGAGTCCCCCATGATACATTT  674

seq1  CATAATATATGTGTCCACCATTGCATCTGCATATTCTAGATACAGAATGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATATATGTGTCCACCATTGCATCTGCATATTCTAGATACAGAATGC  724

seq1  CAATTCCAGAATTC  811
      | ||||||||||||
seq2  CTATTCCAGAATTC  738