BAC Information

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BAC

Clone NameB6Ng01-057K06
Chromosome1 (Build37)
Map Location 45,333,072 - 45,334,119
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC435619, Txn-ps1, Gulp1, LOC100041738, LOC100041752, LOC383640
Downstream geneCol3a1, Col5a2, EG666799, LOC631429, LOC666814, EG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057K06.bB6Ng01-057K06.g
ACCDH879450DH879451
length1,0411,164
definitionDH879450|Mus musculus domesticus DNA, BAC clone: B6Ng01-057K06, 5' end.DH879451|Mus musculus domesticus DNA, BAC clone: B6Ng01-057K06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccccatccccaccctgatgtcactgcccttggtgaaattggctgt
ctgggaagacaaaagtgaacagagatttcaatatcaagtttaaaacactg
ccaaaacccactttacttaatgtagacagtgagtttccagtcatggcttc
catctcctcttcagtgttgcagtcccactggctcatgaataatctttcct
gtggataactgccagttacttgattattatagttttctttgaaactttga
acttgaattatcttctgctggctgaaaatctttcaggaatattcccaaat
aaaatttagctcttatgttttcaacttttgtctcttatgtaaaaatgaag
aataaaagcctggtttaacactagattaaacttaaaagatcaaagcaagt
ctgtatattctcttggcccaggagatgaatggttactgaaggggaagtga
cttatctttgatactgtctgtttttcaaacccccaacttgagactttaaa
tatgttttttcttttatttttgttcttcagaaatttacatttagcatctt
ttcatgcttattccaattgctgtagagcccagttgtgctttctagtagat
tttctgagcattggtaatgacagttcatcttctgaataaagatgccacat
tgactgtctgtcatttaacatgactctaactagacaaaatgaaatgaaac
attaatcgtttttaatccagtgttacaaaaaccatggtaagaatatgtgg
gagtggcaagtagttcaagcactcaacataattacccaatcagatgatac
cacactaacattcttgaatttccaacctctatgaaaattgtaaatcacat
taaggtttccttaacctaagcctcttgaaacatgctgcatgataaatttc
aagtttttaactctatttaattaagaaagtaattgcttgctatgaatctc
ataatgaatttctaaattattaattttcttacatgtctacatacatattg
atcccagataggaaaatatccaccataaagacggaatacaa
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcattagggaaatgcaaatcaaaacaacactgagat
tccacttcaatctagtcagaatggctaagaccaaaaactcaggtgacagc
agatgctggcgaggatgtggagaaaggggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggaggttcctca
gaaaattggacatagtactaccggaggatcccgcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaagaacacatgctccactat
gttcatagcagccttgtttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaatactactcagctattaaaaaaatgaatttatgaaattcctaggcaaa
tggatggacctggagggtatcattctgagtgaagtaacccaatcacaaag
gaactcgcacaatatgtactcactgataagtggatattagcccagaaact
taggatacccaagatataagatacaacttgccaaacgcatgaaattcaag
aagaatgaagaccaaagtgtggacactttaccctttcttagaaatgggaa
caaaacacccatggaaggagttacagagacaaaatttggagctgtgacga
aagaatggaccatctagtgattgccatatgcagggatccatcccataatc
agtttccaaatgctgacaccattgcatacactagcaagattttgctgaaa
ggacccagatatagctctctcttgtgagactatgccggggcctagcaaac
acagaagtggatgatcagagtcagctattggatgggtcacacggccccca
gtggaggagctagaaaattacccaaggagctaaagggaactgcaacctta
taggtggacacatatgaactaacagtacccgggagctcttgtctctagct
gcctatgttcaaaaatggctagtcgcctctcctgccagagaggccatgac
ctgcaaactttatatgcccagatcaggggacgctagtcaatggggaatgg
gtgtgtggagatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_45333072_45334119
seq2: B6Ng01-057K06.b_44_1084

seq1  GAATTCCCCATCCCCACCCTGATGTCACTGCCCTTGGTGAAATTGGCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCATCCCCACCCTGATGTCACTGCCCTTGGTGAAATTGGCTGT  50

seq1  CTGGGAAGACAAAAGTGAACAGAGATTTCAATATCAAGTTTAAAACACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAAGACAAAAGTGAACAGAGATTTCAATATCAAGTTTAAAACACTG  100

seq1  CCAAAACCCACTTTACTTAATGTAGACAGTGAGTTTCCAGTCATGGCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACCCACTTTACTTAATGTAGACAGTGAGTTTCCAGTCATGGCTTC  150

seq1  CATCTCCTCTTCAGTGTTGCAGTCCCACTGGCTCATGAATAATCTTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCTCTTCAGTGTTGCAGTCCCACTGGCTCATGAATAATCTTTCCT  200

seq1  GTGGATAACTGCCAGTTACTTGATTATTATAGTTTTCTTTGAAACTTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATAACTGCCAGTTACTTGATTATTATAGTTTTCTTTGAAACTTTGA  250

seq1  ACTTGAATTATCTTCTGCTGGCTGAAAATCTTTCAGGAATATTCCCAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAATTATCTTCTGCTGGCTGAAAATCTTTCAGGAATATTCCCAAAT  300

seq1  AAAATTTAGCTCTTATGTTTTCAACTTTTGTCTCTTATGTAAAAATGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAGCTCTTATGTTTTCAACTTTTGTCTCTTATGTAAAAATGAAG  350

seq1  AATAAAAGCCTGGTTTAACACTAGATTAAACTTAAAAGATCAAAGCAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAGCCTGGTTTAACACTAGATTAAACTTAAAAGATCAAAGCAAGT  400

seq1  CTGTATATTCTCTTGGCCCAGGAGATGAATGGTTACTGAAGGGGAAGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATATTCTCTTGGCCCAGGAGATGAATGGTTACTGAAGGGGAAGTGA  450

seq1  CTTATCTTTGATACTGTCTGTTTTTCAAACCCCCAACTTGAGACTTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATCTTTGATACTGTCTGTTTTTCAAACCCCCAACTTGAGACTTTAAA  500

seq1  TATGTTTTTTCTTTTATTTTTGTTCTTCAGAAATTTACATTTAGCATCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTTTTCTTTTATTTTTGTTCTTCAGAAATTTACATTTAGCATCTT  550

seq1  TTCATGCTTATTCCAATTGCTGTAGAGCCCAGTTGTGCTTTCTAGTAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCTTATTCCAATTGCTGTAGAGCCCAGTTGTGCTTTCTAGTAGAT  600

seq1  TTTCTGAGCATTGGTAATGACAGTTCATCTTCTGAATAAAGATGCCACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGCATTGGTAATGACAGTTCATCTTCTGAATAAAGATGCCACAT  650

seq1  TGACTGTCTGTCATTTAACATGACTCTAACTAGACAAAATGAAATGAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTCTGTCATTTAACATGACTCTAACTAGACAAAATGAAATGAAAC  700

seq1  ATTAATCGTTTTTAATCCAGTGTTACAAAAACCATGGTAAGAATATGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATCGTTTTTAATCCAGTGTTACAAAAACCATGGTAAGAATATGTGG  750

seq1  GAGTGGCAAGTAGTTCAAGCACTCAACATAATTACCCAATCAGATGATAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGCAAGTAGTTCAAGCACTCAACATAATTACCCAATCAGATGATAC  800

seq1  CACACTAACATTCTTGAATTTCCAACCTCTATGAAAAATTGTAAAATCAC  850
      ||||||||||||||||||||||||||||||||| |||||||| |||||||
seq2  CACACTAACATTCTTGAATTTCCAACCTCTATG-AAAATTGT-AAATCAC  848

seq1  ATTAAGGTTTCCTTAACCTAAGCCTCTTGAAACATGCTGCATGATAAATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGTTTCCTTAACCTAAGCCTCTTGAAACATGCTGCATGATAAATT  898

seq1  TCAAGTTTTTAAACTCTATTTAATTAAGAAAGTAATTGCTTGCTATGAAT  950
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTTTT-AACTCTATTTAATTAAGAAAGTAATTGCTTGCTATGAAT  947

seq1  CTCATAATGAATTCCTAAATTATTAATTTTCTTACATGTCTACATACATA  1000
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CTCATAATGAATTTCTAAATTATTAATTTTCTTACATGTCTACATACATA  997

seq1  TTGATCCACAGATAGGAAAATATCCAACCAATAAAGACAGGAATACAA  1048
      ||||||| ||||||||||||||||||  | |||||||| |||||||||
seq2  TTGATCC-CAGATAGGAAAATATCCA--CCATAAAGAC-GGAATACAA  1041