BAC Information

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BAC

Clone NameB6Ng01-057M06
Chromosome1 (Build37)
Map Location 107,728,106 - 107,903,444
singlet/doubletdoublet
Overlap geneTnfrsf11a, EG635504, Zcchc2
Upstream geneCdh20, Rnf152, LOC100041985, Pign, LOC666249, 2310035C23Rik, LOC100042023
Downstream geneEG435634, Phlpp, LOC626075, Bcl2, LOC100042085, Fvt1, Vps4b, Serpinb5, LOC671141, Serpinb12, Serpinb13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057M06.bB6Ng01-057M06.g
ACCDH879536DH879537
length1,0021,079
definitionDH879536|Mus musculus domesticus DNA, BAC clone: B6Ng01-057M06, 5' end.DH879537|Mus musculus domesticus DNA, BAC clone: B6Ng01-057M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,728,106 - 107,728,727)(107,902,348 - 107,903,444)
sequence
gaattccctttgtagaacagatgactccttaggcctgttttttttttttt
cacaagcttcaagatctagctgggttgggtcttgctctaagggtaccacc
acattcgatccacttagcatctggtctttcttttagatgtctctcctcca
acattacatttcctggtgctccttttctcctcgaactgtatgttttgtgt
ttctttttgccttgcttgctctttctcattatagatctgcatgagagtaa
ctatatcaataaccacatgacataatcaatactagaatgtcttgaaatct
ccactgctaatgacattagtccaaaagtcttccctcttgtctccagcaga
gttttaggatacgtgaataaagcagccacattccttgtcacaacattgta
agactagtctgtacccagccactaatatcgttatcctctgagacacctta
aagctggacctgctcttccaggttccttctaggatggcccactaagcccc
acttagagcattcaatcgcctttctaatccaaagtcccaaagtcatccta
atccaccaaatagcatggtcaggccctcatagcaacacccaagtccctgg
gaccagcgtgggccttagtcactgttctattgctgtggagagacaccatg
accaaggcatcttacataagggagagtttaattggggcagcttacagttt
tagagggttagactgtgatcatcatggtagcaggcaggcatggtgtagag
cagagctgaaagtaagcctctgcaaacaggaggcagaaagaaaccaagag
agagactgggcatggtgtgggcctttgaatcctcaacgctcactcccagt
gacactcctcctccaacaaaggcacaccctgagcctacccgctttaggaa
aaacgtttctatcctgaaagtgggggaaaggttcctgtgcaatgttcccc
ctctctgtcgttcacagcaaggcagctagctcacctgccccacgtcaaaa
ta
gaattcttctggaagctaacagactggtgagaatcagtcccttgcagagt
taagaatcaacacagacacaaatgacctgaacaggcacacaaggtgaatc
ccagcaaaatcttcaaagctggtgcatggtaataacactttcacacaaag
cttggtgagtgagttaggactactacttgtttctggatttcccagcttta
tctccctgtcaacaataaactgtgaagtgtttgcttactgagcaatagta
atttattgaccacacagacatagttcccccttttatgaggtctttcattt
ttttcaattacatctgattggtacttctattcaagggaacagctaaggat
gtgcagaaaacaaacttgccaaacaaaggtaactccaccatcttcaacgc
cccgatagcattaagacacttttgaaagtagggtgggggaaggatgaact
ccaacgggaaaggagtgaaggtcaagcagagcccacagaggagaacctca
gtgtgttaggtaccacaggaaaatgagcctcatctcgctgcagatgagca
ccgctgtagaggactaagaatggggacctattttctaaagcgatttcttc
tgctacttatactggtaacaaggtaagaagacacacagggtaacattttc
tacacctctattcatccgagcttggaggtaacctatgtgtgttttaattt
tcttggtgattcttttgacatttgaaactttaggaatctctatagcatat
acaaatcttaacaacaaaatctataattttacctttcagtagaaattcct
gtagttctttgtgggtttttgttactgttgtgactgaaaggtcagaccaa
ttacctggatttaagaaaacacacatattgtatggttattgcttagcagg
aactggctggggaaaaagcatgtgtaaacagaaggcttaaatttagatta
gcaatcgagaaataaggtcagctgcattctctcgctattttctgacatgt
tagaaaaagttttcagttattcttttaattgtacttttcaaagacgttta
aaatggacctgcttggatatttcaggaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_107728106_107728727
seq2: B6Ng01-057M06.b_436_1046

seq1  AACATTGTAAGACTAGTCTGTACCCAGCCACTAATATCGTTATCCTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGTAAGACTAGTCTGTACCCAGCCACTAATATCGTTATCCTCTGA  50

seq1  GACACCTTAAAGCTGGACCTGCTCTTCCAGGTTCCTTCTAGGATGGCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTTAAAGCTGGACCTGCTCTTCCAGGTTCCTTCTAGGATGGCCCA  100

seq1  CTAAGCCCCACTTAGAGCATTCAATCGCCTTTCTAATCCAAAGTCCCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCCCCACTTAGAGCATTCAATCGCCTTTCTAATCCAAAGTCCCAAA  150

seq1  GTCATCCTAATCCACCAAATAGCATGGTCAGGCCCTCATAGCAACACCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCCTAATCCACCAAATAGCATGGTCAGGCCCTCATAGCAACACCCA  200

seq1  AGTCCCTGGGACCAGCGTGGGCCTTAGTCACTGTTCTATTGCTGTGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTGGGACCAGCGTGGGCCTTAGTCACTGTTCTATTGCTGTGGAGA  250

seq1  GACACCATGACCAAGGCATCTTACATAAGGGAGAGTTTAATTGGGGCAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCATGACCAAGGCATCTTACATAAGGGAGAGTTTAATTGGGGCAGC  300

seq1  TTACAGTTTTAGAGGGTTAGACTGTGATCATCATGGTAGCAGGCAGGCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTTTTAGAGGGTTAGACTGTGATCATCATGGTAGCAGGCAGGCAT  350

seq1  GGTGTAGAGCAGAAGCTGAAAGTAAGCCTCTGCAAACAGGAGGCAGAAAG  400
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGTGTAGAGCAG-AGCTGAAAGTAAGCCTCTGCAAACAGGAGGCAGAAAG  399

seq1  AAACCAAGAGAGAGACTGGGCATGGTGTGGGCCTTTGAATCCTC-ACGCT  449
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAACCAAGAGAGAGACTGGGCATGGTGTGGGCCTTTGAATCCTCAACGCT  449

seq1  CACTCCCAGTGACACTCCTCCTCCAACAAAGCCACACCCTGAGCCTACCC  499
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CACTCCCAGTGACACTCCTCCTCCAACAAAGGCACACCCTGAGCCTACCC  499

seq1  GCTTTAGGAAAAAACGTTTCTATCCTGAAAGGTGGGGGAAAAGGTTTTCC  549
      |||||||| ||||||||||||||||||||| |||||||||| |   ||||
seq2  GCTTTAGG-AAAAACGTTTCTATCCTGAAA-GTGGGGGAAAGG---TTCC  544

seq1  TGTGCAAATGTTCCCCCCTCTCTGTCCGTTCACCAGCAAGGGCAGCTAGC  599
      ||||| |||||| |||||||||||| |||||| |||||| ||||||||||
seq2  TGTGC-AATGTT-CCCCCTCTCTGT-CGTTCA-CAGCAA-GGCAGCTAGC  589

seq1  TCACCTGCCCCACTGTCAGAATA  622
      ||||||||||||| |||| ||||
seq2  TCACCTGCCCCAC-GTCAAAATA  611

seq1: chr1_107902348_107903444
seq2: B6Ng01-057M06.g_72_1150 (reverse)

seq1  GTTCCTGGAAATTATCAAAGCAGTTACATTTTAATACTGCTTTTTGAAAA  50
      |||||||  || |||| |||||| | |||||||| ||   | ||||||||
seq2  GTTCCTG--AAATATCCAAGCAGGTCCATTTTAA-AC--GTCTTTGAAAA  45

seq1  GTACAATTTAAAAAGAATTACTGGAAAACTTTTTTCTGTACACTGTCAGA  100
      ||||||||  |||||||| ||| |||||| |||||||  ||| |||||||
seq2  GTACAATT--AAAAGAATAACT-GAAAAC-TTTTTCT-AACA-TGTCAGA  89

seq1  AACTATGCGAGAGAATGCTAGCTGACCTTTATATCTCTGATTGCTAATCT  150
      || || |||||||||||| |||||||| |||| |||| ||||||||||| 
seq2  AAATA-GCGAGAGAATGC-AGCTGACC-TTATTTCTC-GATTGCTAATC-  134

seq1  TAAATTTAAGGCCTTTTGTTTTACACATGGCTTTTTCCCCAGCCAGTTCC  200
      ||||||||| ||||| || ||||||||| |||||||||||||||||||||
seq2  TAAATTTAA-GCCTTCTG-TTTACACAT-GCTTTTTCCCCAGCCAGTTCC  181

seq1  TGCCTAAGCAATAACCATACAATATGTGTGTTTTCTTAAAT-CAGGTAAA  249
      || |||||||||||||||||||||||||||||||||||||| ||||| ||
seq2  TG-CTAAGCAATAACCATACAATATGTGTGTTTTCTTAAATCCAGGT-AA  229

seq1  TTGGTCTGACCTTTCAGTCACAACAGTAACAAAAACCCACCAAGAACTAC  299
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTGGTCTGACCTTTCAGTCACAACAGTAACAAAAACCCACAAAGAACTAC  279

seq1  AGGAATTTCTACTG-AAGGTAAAATTATAGATTTTGTTGTTAAGATTTGT  348
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGGAATTTCTACTGAAAGGTAAAATTATAGATTTTGTTGTTAAGATTTGT  329

seq1  ATATGCTATAGAGATTCCTAAAGTTTC-AATGTCAAAAGAATCACCAAGA  397
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATATGCTATAGAGATTCCTAAAGTTTCAAATGTCAAAAGAATCACCAAGA  379

seq1  AAATTAAAACACACATAGGTTACCTCCAAGCTCGGATGAATAGAGGTGTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAACACACATAGGTTACCTCCAAGCTCGGATGAATAGAGGTGTA  429

seq1  GAAAATGTTACCCTGTGTGTCTTCTTACCTTGTTACCAGTATAAGTAGCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTTACCCTGTGTGTCTTCTTACCTTGTTACCAGTATAAGTAGCA  479

seq1  GAAGAAATCGCTTTAGAAAATAGGTCCCCATTCTTAGTCCTCTACAGCGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAATCGCTTTAGAAAATAGGTCCCCATTCTTAGTCCTCTACAGCGG  529

seq1  TGCTCATCTGCAGCGAGATGAGGCTCATTTTCCTGTGGTACCTAACACAC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATCTGCAGCGAGATGAGGCTCATTTTCCTGTGGTACCTAACACAC  579

seq1  TGAGGTTCTCCTCTGTGGGCTCTGCTTGACCTTCACTCCTTTCCCGTTGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTCTCCTCTGTGGGCTCTGCTTGACCTTCACTCCTTTCCCGTTGG  629

seq1  AGTTCATCCTTCCCCCACCCTACTTTCAAAAGTGTCTTAATGCTATCGGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATCCTTCCCCCACCCTACTTTCAAAAGTGTCTTAATGCTATCGGG  679

seq1  GCGTTGAAGATGGTGGAGTTACCTTTGTTTGGCAAGTTTGTTTTCTGCAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTGAAGATGGTGGAGTTACCTTTGTTTGGCAAGTTTGTTTTCTGCAC  729

seq1  ATCCTTAGCTGTTCCCTTGAATAGAAGTACCAATCAGATGTAATTGAAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTAGCTGTTCCCTTGAATAGAAGTACCAATCAGATGTAATTGAAAA  779

seq1  AAATGAAAGACCTCATAAAAGGGGGAACTATGTCTGTGTGGTCAATAAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAGACCTCATAAAAGGGGGAACTATGTCTGTGTGGTCAATAAAT  829

seq1  TACTATTGCTCAGTAAGCAAACACTTCACAGTTTATTGTTGACAGGGAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTGCTCAGTAAGCAAACACTTCACAGTTTATTGTTGACAGGGAGA  879

seq1  TAAAGCTGGGAAATCCAGAAACAAGTAGTAGTCCTAACTCACTCACCAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTGGGAAATCCAGAAACAAGTAGTAGTCCTAACTCACTCACCAAG  929

seq1  CTTTGTGTGAAAGTGTTATTACCATGCACCAGCTTTGAAGATTTTGCTGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGTGAAAGTGTTATTACCATGCACCAGCTTTGAAGATTTTGCTGG  979

seq1  GATTCACCTTGTGTGCCTGTTCAGGTCATTTGTGTCTGTGTTGATTCTTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCACCTTGTGTGCCTGTTCAGGTCATTTGTGTCTGTGTTGATTCTTA  1029

seq1  ACTCTGCAAGGGACTGATTCTCACCAGTCTGTTAGCTTCCAGAAGAATTC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGCAAGGGACTGATTCTCACCAGTCTGTTAGCTTCCAGAAGAATTC  1079