BAC Information

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BAC

Clone NameB6Ng01-057N22
Chromosome1 (Build37)
Map Location 166,916,256 - 166,964,696
singlet/doubletdoublet
Overlap genenone
Upstream geneBC055324, 2810422O20Rik, Sele, Sell, Selp, F5, Slc19a2, 4930455F23Rik, Blzf1, Nme7, Atp1b1, LOC100040065, Dpt, Xcl1, 1700029M03Rik
Downstream geneTbx19, Sft2d2, Tiprl, Gpr161, Iqwd1, Brp44, Sacy, Ppia-ps1-1625, Mpzl1, Rcsd1, Creg1, Cd247, Pou2f1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057N22.bB6Ng01-057N22.g
ACCDH879602DH879603
length4161,047
definitionDH879602|Mus musculus domesticus DNA, BAC clone: B6Ng01-057N22, 5' end.DH879603|Mus musculus domesticus DNA, BAC clone: B6Ng01-057N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(166,964,277 - 166,964,696)(166,916,256 - 166,917,191)
sequence
tgcacttctagtcccatggtcagtgttgatgctcacagtgacccagccca
ctgaggaaaccatgggagccgaagctgatgcacattgtgcagtaatatgt
gtgtgtgtgcgctcatgtgtgtgctctttatgtagctggtgagccagccc
tgaatgtctcctactgaagttcacatcttctagctttgaggacaagttca
gtcagctaagttctagtggagagacagagtgaccttgtcttttgctcctg
gaagcactgaaaaaagtttaatagagtggaaaggcatcatggctcatggg
tggtagtgatgaaggaactggtggtggtgatggtggtggtggtcgtggtg
gtgatggtgacggtggtggaggtggtggtggtgatggtggtggtggtagt
ggtggtgagggtggcg
gaattcactcggacaaccggatccttctacggcaaagcttttattgcttc
aacataaggaagaccccaaacctggaaaatggtgctgcttagatagcccg
cagcgtgacgtttcagcacctgatgtggcgtgacagcacagcacctgatt
agttgctcacccatcaccccattactacgccccgatatgggcagtgactg
ggtgtggatttactcttgcacttgcgcataagacttgtttactagttagg
cgcagtggaagccagcgccatcttataatggcgattgctcacggcacggc
tctccacatctataaaggcattttcagagagatttagctgaagaaggaag
acctacaatgagtgtcggcagcagcatcccattggctggaatttcagttg
aagaaataagaagatacaagtggggcaccctcatccatccctctcagctt
cctgactgaggactcagtgtcaccaatcacctccctccattgctgccatg
ctttccctgtcacgatggactctgtccctcttgactgtgagccaaaatac
actcctcatttcttaaggtattttggtccaatcctttatcacagcaagaa
gaaagaaaactaattcaatctggaatccaagaggaatgaatgatccctaa
tacacctcacaatcaacttcgtggtttctgggctgccagttttagcctaa
ttggctcttagtgggaacttggaatagatcatttggcattgcccagggga
agggcttagaaagacacatattagtgctgcgtgcaatgtcttcctctgga
gtaaccttacactgcaaaacagatcaaacaccactcacctcttcacaaat
ctaaatatggtcatggcttctctggggactagttgactgagtggagaagt
ttctaatcataaatgactcacgggcctcacagctatgtctagttcaccct
actcacatactcagtacatcatttctgtttttagaaatcttatgttggat
tactttcacacagactagtttattttctcagactaaacacagggcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_166964277_166964696
seq2: B6Ng01-057N22.b_47_466 (reverse)

seq1  CCACCATCACCACCACTACCACCACCACCATCACCACCACTACCACCACC  50
      ||||| |||||||||||||||||||||||||||||||||| ||| |||||
seq2  CCACCCTCACCACCACTACCACCACCACCATCACCACCACCACCTCCACC  50

seq1  ACCATCACCATCACCACCACTACCACCACCACCATCACCACCACCAGTTC  100
      ||| |||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACCGTCACCATCACCACCACGACCACCACCACCATCACCACCACCAGTTC  100

seq1  CTTCATCACTACCACCCATGAGCCATGATGCCTTTCCACTCTATTAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCACTACCACCCATGAGCCATGATGCCTTTCCACTCTATTAAACT  150

seq1  TTTTTCAGTGCTTCCAGGAGCAAAAGACAAGGTCACTCTGTCTCTCCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGTGCTTCCAGGAGCAAAAGACAAGGTCACTCTGTCTCTCCACT  200

seq1  AGAACTTAGCTGACTGAACTTGTCCTCAAAGCTAGAAGATGTGAACTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTAGCTGACTGAACTTGTCCTCAAAGCTAGAAGATGTGAACTTCA  250

seq1  GTAGGAGACATTCAGGGCTGGCTCACCAGCTACATAAAGAGCACACACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAGACATTCAGGGCTGGCTCACCAGCTACATAAAGAGCACACACAT  300

seq1  GAGCGCACACACACACATATTACTGCACAATGTGCATCAGCTTCGGCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGCACACACACACATATTACTGCACAATGTGCATCAGCTTCGGCTCC  350

seq1  CATGGTTTCCTCAGTGGGCTGGGTCACTGTGAGCATCAACACTGACCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTTCCTCAGTGGGCTGGGTCACTGTGAGCATCAACACTGACCATG  400

seq1  GGACTAGAAGTGCAGAATTC  420
      ||||||||||||||||||||
seq2  GGACTAGAAGTGCAGAATTC  420

seq1: chr1_166916256_166917191
seq2: B6Ng01-057N22.g_188_1113

seq1  GATGTGGCGTGACAGCACAGCACCTGATTAGTTGCTCACCCATCACCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGCGTGACAGCACAGCACCTGATTAGTTGCTCACCCATCACCCCA  50

seq1  TTACTACGCCCCGATATGGGCAGTGACTGGGTGTGGATTTACTCTTGCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTACGCCCCGATATGGGCAGTGACTGGGTGTGGATTTACTCTTGCAC  100

seq1  TTGCGCATAAGACTTGTTTACTAGTTAGGCGCAGTGGAAGCCAGCGCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGCATAAGACTTGTTTACTAGTTAGGCGCAGTGGAAGCCAGCGCCAT  150

seq1  CTTATAATGGCGATTGCTCACGGCACGGCTCTCCACATCTATAAAGGCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAATGGCGATTGCTCACGGCACGGCTCTCCACATCTATAAAGGCAT  200

seq1  TTTCAGAGAGATTTAGCTGAAGAAGGAAGACCTACAATGAGTGTCGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAGAGATTTAGCTGAAGAAGGAAGACCTACAATGAGTGTCGGCAG  250

seq1  CAGCATCCCATTGGCTGGAATTTCAGTTGAAGAAATAAGAAGATACAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCCCATTGGCTGGAATTTCAGTTGAAGAAATAAGAAGATACAAGT  300

seq1  GGGGCACCCTCATCCATCCCTCTCAGCTTCCTGACTGAGGACTCAGTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCACCCTCATCCATCCCTCTCAGCTTCCTGACTGAGGACTCAGTGTC  350

seq1  ACCAATCACCTCCCTCCATTGCTGCCATGCTTTCCCTGTCACGATGGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATCACCTCCCTCCATTGCTGCCATGCTTTCCCTGTCACGATGGACT  400

seq1  CTGTCCCTCTTGACTGTGAGCCAAAATACACTCCTCATTTCTTAAGGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCTCTTGACTGTGAGCCAAAATACACTCCTCATTTCTTAAGGTAT  450

seq1  TTTGGTCCAATCCTTTATCACAGCAAGAAGAAAGAAAACTAATTCAATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTCCAATCCTTTATCACAGCAAGAAGAAAGAAAACTAATTCAATCT  500

seq1  GGAATCCAAGAGGAATGAATGATCCCTAATACACCTCACAATCAACTTCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCAAGAGGAATGAATGATCCCTAATACACCTCACAATCAACTTCG  550

seq1  TGGTTTCTGGGCTGCCAGTTTTAGCCTAATTGGCTCTTAGTGGGAACTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTGGGCTGCCAGTTTTAGCCTAATTGGCTCTTAGTGGGAACTTG  600

seq1  GAATAGATCATTTGGCATTGCCCAGGGGAAGGGCTTAGAAAGACACATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGATCATTTGGCATTGCCCAGGGGAAGGGCTTAGAAAGACACATAT  650

seq1  TAGTGCTGCGTGCAATGTCTTCCTCTGGAGTAACCTTACACTGCAAAACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAGTGCTGCGTGCAATGTCTTCCTCTGGAGTAACCTTACACTGCAAAAC-  699

seq1  AGATCAAACACCACTCACCTCTTCACAAATCTAAATATGGTCATGGCTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAACACCACTCACCTCTTCACAAATCTAAATATGGTCATGGCTTC  749

seq1  TCTGGGGACTAGTTGACTGGAGTGGAGAAGTTTCTAATCATAAATGACTC  800
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCTGGGGACTAGTTGACT-GAGTGGAGAAGTTTCTAATCATAAATGACTC  798

seq1  ACGGGCCTCACAGGCTATGTCTAGTTCACCCTACTCACATACTCAGTACA  850
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ACGGGCCTCACA-GCTATGTCTAGTTCACCCTACTCACATACTCAGTACA  847

seq1  TCATTTCTGTTTTATAGGAAATTCTTATGTATGGATTACTTTTCACACAG  900
      ||||||||||||| |||  || |||||||| |||||||| ||||||||||
seq2  TCATTTCTGTTTT-TAG--AAATCTTATGT-TGGATTAC-TTTCACACAG  892

seq1  ACTAGTTTTATTTCCTCAGACTAAACACCAGGGCCT  936
      ||||| ||||||| ||||||||||||| ||||||||
seq2  ACTAG-TTTATTTTCTCAGACTAAACA-CAGGGCCT  926