BAC Information

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BAC

Clone NameB6Ng01-058D05
Chromosome4 (Build37)1 (Build37)
Map Location 6,556,196 - 6,556,79172,532,601 - 72,532,790
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1700012H17Rik, LOC669309, 3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414
Downstream geneTox, LOC100039421, LOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058D05.bB6Ng01-058D05.g
ACCDH879844DH879845
length961852
definitionDH879844|Mus musculus domesticus DNA, BAC clone: B6Ng01-058D05, 5' end.DH879845|Mus musculus domesticus DNA, BAC clone: B6Ng01-058D05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,556,196 - 6,556,791)(72,532,601 - 72,532,790)
sequence
gaattccttgttgtcacagatgatagaagtaatacagaaacacaaaatag
tttaccaaggtaaattgattagatttctatttggctttcaaatgaggttt
gatgattattcttggttgtcaacttgactacaactggaatcaggtaaaat
ctaaatgactaaacacacctgtaaagggtttttgttttgaaattaaattt
tttgaagtgagaagatccacttctaatccagatcttgaggtgggaagatc
cacctttagatatgcaggtagcctatataaatagtatatgcaggtagcct
atataaatagtatatgcaggtagcctatataaatagtatatgcaggtagc
ctatataaaggacatggaataagaaagtgcgctctctctctctctctctc
tctctctctctctctcccttcttgacattagagcctacttcttttttttt
cttttttttttcttggatatttctagagcctacttctttatgattaaagg
caaccaatatctatctatctatctatctatctatctatctatctatctat
ctatctatctccagatgatacattcagatttgtatactgaacaactattt
tttctattttaaacaagtatttattagatattttcttcatttacatttca
aaagctatcctgaaagtcccctatgccctccccctgccctgctctccaac
ccacccactcctgcttcctggccctgtcattcccctgtactggggcatat
aatcttggcaagaccaagggcctctcctcccaatgatggccaactaggcc
attttctgctacatatgcagctagagacatgaactctgtgggtactggtt
agttcatattattgtcctcctatagggttacggaccctttcagctccttg
ggtactttctctagctcctccattgggttccatccaataaatgactgtga
gcttcacttct
gaattcaacttcagattatgctgtgtgtttgaggtcctttgctttcccct
gtcatttcagagtcagtacctatagaattactcatggggatttcattgga
attttactgaagctatacatgaagttgaaaagaacttgacaacatccaat
actgagagttcccacctgtgaacacagaggacttgccatttatttagata
acagttcattttcttcatcaatagcttgtaattttctataagacttagac
atgtttccttagatttatacctaagtattgtatttttagaagactcttat
aaatggtgtttttaaatgttcaatgtgcagttctagtggctggcaaacaa
agaagcatcacaccctgcatatctgttatgttcgcttattgttttcaggt
catttttgttgttgatgctaattctttgtgattttctatgtgcaaaagta
agccatctgtgactagaaagtaattccttcgttatctctttctttctttc
ttctcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc
ttcttcttcttcttcttcttcttcttctccctctgtctctctctctctat
ctctatctctctctctctctctctctctctctctcccccttctatgtaac
caatttcttcctttattaccttaggccagacattcaatgcactgcttatt
ggggtgagatgaagtccttgtcttgtttcaagtcttatatgaagtttccc
atcactggtgtaattttaactgtagagtttctatcaatactgtttttggt
ttggtttggtttggtttggtttacgttcttcttttgtttttggttttgtt
tt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_6556196_6556791
seq2: B6Ng01-058D05.b_46_641

seq1  GAATTCCTTGTTGTCACAGATGATAGAAGTAATACAGAAACACAAAATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTGTTGTCACAGATGATAGAAGTAATACAGAAACACAAAATAG  50

seq1  TTTACCAAGGTAAATTGATTAGATTTCTATTTGGCTTTCAAATGAGGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCAAGGTAAATTGATTAGATTTCTATTTGGCTTTCAAATGAGGTTT  100

seq1  GATGATTATTCTTGGTTGTCAACTTGACTACAACTGGAATCAGGTAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATTATTCTTGGTTGTCAACTTGACTACAACTGGAATCAGGTAAAAT  150

seq1  CTAAATGACTAAACACACCTGTAAAGGGTTTTTGTTTTGAAATTAAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGACTAAACACACCTGTAAAGGGTTTTTGTTTTGAAATTAAATTT  200

seq1  TTTGAAGTGAGAAGATCCACTTCTAATCCAGATCTTGAGGTGGGAAGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGTGAGAAGATCCACTTCTAATCCAGATCTTGAGGTGGGAAGATC  250

seq1  CACCTTTAGATATGCAGGTAGCCTATATAAATAGTATATGCAGGTAGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTAGATATGCAGGTAGCCTATATAAATAGTATATGCAGGTAGCCT  300

seq1  ATATAAATAGTATATGCAGGTAGCCTATATAAATAGTATATGCAGGTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATAGTATATGCAGGTAGCCTATATAAATAGTATATGCAGGTAGC  350

seq1  CTATATAAAGGACATGGAATAAGAAAGTGCGCTCTCTCTCTCTCTCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATAAAGGACATGGAATAAGAAAGTGCGCTCTCTCTCTCTCTCTCTC  400

seq1  TCTCTCTCTCTCTCTCCCTTCTTGACATTAGAGCCTACTTCTTTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCCCTTCTTGACATTAGAGCCTACTTCTTTTTTTTT  450

seq1  CTTTTTTTTTTCTTGGATATTTCTAGAGCCTACTTCTTTATGATTAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTTCTTGGATATTTCTAGAGCCTACTTCTTTATGATTAAAGG  500

seq1  CAACCAATATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCAATATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTAT  550

seq1  CTATCTATCTCCAGATGATACATTCAGATTTGTATACTGAACAACT  596
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTATCTCCAGATGATACATTCAGATTTGTATACTGAACAACT  596

seq1: chr1_72532601_72532790
seq2: B6Ng01-058D05.g_650_919 (reverse)

seq1  ----------------------------------AAAACAAAACCAA---  13
                                         |||| |||||||   
seq2  AAAACAAAACCAAAAACAAAAGAAGAACGTAAACCAAACCAAACCAAACC  50

seq1  AAACCAGTTACA--AATGACAGTCACT------TTAA-------------  42
      ||||||   |||  | ||| ||  |||      ||||             
seq2  AAACCAAAAACAGTATTGATAGAAACTCTACAGTTAAAATTACACCAGTG  100

seq1  ATGG-----TTTA-ATAAGGATT-AAAGATGAAATGTAGCATTAAAATGT  85
      ||||     || | |||||  || ||| | || |   || | |   || |
seq2  ATGGGAAACTTCATATAAGACTTGAAACAAGACA---AGGACT-TCATCT  146

seq1  TAC-----TTAGTAAT--TTTGTGTGTGTG------TGT------GTGTG  116
       ||     | || | |   |||  ||| ||       ||      |   |
seq2  CACCCCAATAAGCAGTGCATTGAATGTCTGGCCTAAGGTAATAAAGGAAG  196

seq1  TGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  166
          ||  |   |   || | |||||||||||||||||||||||||||||
seq2  AAATTGGTTACATAGAAGGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  246

seq1  AGAGAGAGAGAGAGAGAGAGACAG  190
      | ||||| ||||||||||||||||
seq2  ATAGAGATAGAGAGAGAGAGACAG  270