BAC Information

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BAC

Clone NameB6Ng01-058E06
Chromosome1 (Build37)
Map Location 72,704,797 - 72,719,093
singlet/doubletdoublet
Overlap geneAnkar
Upstream geneGabarapl2-ps1_652.1, LOC383528, LOC675667, EG667931, EG433319, LOC667937, LOC100043255, Mreg, Pecr, Tmem169, Xrcc5, March4, Smarcal1
Downstream geneRpl37a, Igfbp2, Igfbp5, LOC672187, LOC100042860, Tnp1, 1700027A15Rik, Pinc, LOC672208, LOC100043291
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058E06.bB6Ng01-058E06.g
ACCDH879892DH879893
length1,1021,091
definitionDH879892|Mus musculus domesticus DNA, BAC clone: B6Ng01-058E06, 5' end.DH879893|Mus musculus domesticus DNA, BAC clone: B6Ng01-058E06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,704,797 - 72,705,919)(72,717,989 - 72,719,093)
sequence
gaattcaagagcaaaacagatatgaaattcttaatgtcaccattttaact
gaccaagtttatttaaactatttggaaatctttgagatctcttatagtat
gaatagtgataaagaggcaattactacttctctacccaagtcttttattt
ttctcatagtatttaagaaattgagattgtatacaaaccaatacaaatgg
accccactgctctgatgacgctcagaagtgtgccttctggtatcttatta
atcctcagcaggcgaaccagtggtgcaatgcccttgccttcacatatctg
attctgatgcatccgactgtccttactcagagctatgactgcttcacctc
ctggtaacaaacagtaagaggtgggtgtggacttcagtgtctactacatc
agcagttatgcaaagaaagcaacttacctacatactgcatcttagctgat
ggtgacaggagcatgcttattatgaggttgtatccaatctgctctgccat
atacttttgttgtttcaatgtttgtcctgccaaggcccaaagtgctatgg
ctccctgctccttaacatctatttgaaaggcctattaaaacaaaaacatg
acattcactcagtgcatgtgtactagacacattacagatgtatagtttta
taaaatacacattcagaattttgtttgatttttccaatcttcaaatacaa
ttcaaaataaaataaaccatctaaacaattggaaaagtaatgataaaatc
tctacctgtagaagttttaggaggtccttagttaattctctttccagaaa
ttccttctggattaaagggttgcagtttgccagtgattccacagccattg
caccttttacttggacactgagctgcttccctttaaaagagttaccaggg
gagggatggccctttctttgcgatagcatcctgcacttcttattgtcgcg
ggcaacctcagcaattgtagctgagacagtgccttcagcacatcttcaaa
gagtgagagtaggaacatgtaaattactgcatttctactagttcccattt
acaagtcaaattatactcaagaaaatttagaaaacagaaatataatactg
tc
gaattcagatgctaagcacacaagtaaagttgggcattgtggcctgaatt
cagatgctaagcacacaagtaaagttgggcattgtggcctgaattcagat
gctaagcacacaagtaaagttgggcattgtggcctgtttgtaaccctggc
actcaggtttgcaaaactgttttgagaatttccccaactttgtgtttatt
ctagctagaattactataaatattaggctattaggttagtttaatgtata
catggaaatttactcattccacaatccccccaatatttcatgaagattaa
gcagcagaaaagaactcaagggaaaacaaggcaaacaagacacaataaaa
ataggaggcaggccagttcctggagctcactgcatccagtctaatcaact
gatgcgcatcaggttcaatggaaatgctgtctcagaaattaaggtagagt
cactcaggaggcagaggctagcctggtctacattctaggacagctagagc
taaaccagagaaactgtcttgaaaaaccaaaaccaaccagccaactttaa
aagaaaaaaacaaaaaaccaaaaccccaaaccaaactaaaccaaaccaaa
aaagtaacatagagaagaaatagtgaaaggagcttgatgttgacctctgg
accccaactcccaatacgaagatacatttatgaacaaacaaaacacacat
tcacacaaacacacaaactacacatgaatgcacacacacaaaacaaacat
agacacacaaatcacatgtgggtacacacacaaagccattcactcaaaca
caacatacagaaatggacatgaatttacacacacaaaacattttcatgca
aacactataacactatatacatataaacaaatgatatgcttatgaatgca
cacacacaaaacacacattctcagaaacacgacactacccacacacacac
acacacacacacacaccaccacatactttaaaaaatgatgtccaactatt
tgttcaaaatggtgtcagcacatctggaggctttctgagtacaacagccc
aagatatactgggaaaggtctaagtattttttatgcacgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_72704797_72705919
seq2: B6Ng01-058E06.b_45_1146

seq1  GAATTCAAGAGCAAAACAGATATGAAATTCTTAATGTCACCATTTTAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGAGCAAAACAGATATGAAATTCTTAATGTCACCATTTTAACT  50

seq1  GACCAAGTTTATTTAAACTATTTGGAAATCTTTGAGATCTCTTATAGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGTTTATTTAAACTATTTGGAAATCTTTGAGATCTCTTATAGTAT  100

seq1  GAATAGTGATAAAGAGGCAATTACTACTTCTCTACCCAAGTCTTTTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGTGATAAAGAGGCAATTACTACTTCTCTACCCAAGTCTTTTATTT  150

seq1  TTCTCATAGTATTTAAGAAATTGAGATTGTATACAAACCAATACAAATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCATAGTATTTAAGAAATTGAGATTGTATACAAACCAATACAAATGG  200

seq1  ACCCCACTGCTCTGATGACGCTCAGAAGTGTGCCTTCTGGTATCTTATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACTGCTCTGATGACGCTCAGAAGTGTGCCTTCTGGTATCTTATTA  250

seq1  ATCCTCAGCAGGCGAACCAGTGGTGCAATGCCCTTGCCTTCACATATCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCAGCAGGCGAACCAGTGGTGCAATGCCCTTGCCTTCACATATCTG  300

seq1  ATTCTGATGCATCCGACTGTCCTTACTCAGAGCTATGACTGCTTCACCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGATGCATCCGACTGTCCTTACTCAGAGCTATGACTGCTTCACCTC  350

seq1  CTGGTAACAAACAGTAAGAGGTGGGTGTGGACTTCAGTGTCTACTACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAACAAACAGTAAGAGGTGGGTGTGGACTTCAGTGTCTACTACATC  400

seq1  AGCAGTTATGCAAAGAAAGCAACTTACCTACATACTGCATCTTAGCTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTATGCAAAGAAAGCAACTTACCTACATACTGCATCTTAGCTGAT  450

seq1  GGTGACAGGAGCATGCTTATTATGAGGTTGTATCCAATCTGCTCTGCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACAGGAGCATGCTTATTATGAGGTTGTATCCAATCTGCTCTGCCAT  500

seq1  ATACTTTTGTTGTTTCAATGTTTGTCCTGCCAAGGCCCAAAGTGCTATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTTGTTGTTTCAATGTTTGTCCTGCCAAGGCCCAAAGTGCTATGG  550

seq1  CTCCCTGCTCCTTAACATCTATTTGAAAGGCCTATTAAAACAAAAACATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGCTCCTTAACATCTATTTGAAAGGCCTATTAAAACAAAAACATG  600

seq1  ACATTCACTCAGTGCATGTGTACTAGACACATTACAGATGTATAGTTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCACTCAGTGCATGTGTACTAGACACATTACAGATGTATAGTTTTA  650

seq1  TAAAATACACATTCAGAATTTTGTTTGATTTTTCCAATCTTCAAATACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATACACATTCAGAATTTTGTTTGATTTTTCCAATCTTCAAATACAA  700

seq1  TTCAAAATAAAATAAACCATCTAAACAATTGGAAAAGTAATGATAAAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATAAAATAAACCATCTAAACAATTGGAAAAGTAATGATAAAATC  750

seq1  TCTACCTGTAGAAGTTTTAGGAGGTCCTTAGTTAATTCTCTTTCCAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTGTAGAAGTTTTAGGAGGTCCTTAGTTAATTCTCTTTCCAGAAA  800

seq1  TTCCTTCTGGATTAAAGGGTTGCAGTTTGCCAGTGATTCCACAGCCATTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCTGGATTAAAGGGTTGCAGTTTGCCAGTGATTCCACAGCCATTG  850

seq1  CACCTTTTACTTGGACACTGAGCTGCTTCCCTTTAAAAAGAGTTACCAGG  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CACCTTTTACTTGGACACTGAGCTGCTTCCCTTT-AAAAGAGTTACCAGG  899

seq1  GGAGGGATGGCCCCTTCCTTTGCGATAGCATCCTGCACTTCCTTATTGTC  950
      |||||||||| ||||| ||||||||||||||||||||||| |||||||||
seq2  GGAGGGATGG-CCCTTTCTTTGCGATAGCATCCTGCACTT-CTTATTGTC  947

seq1  GCGGGCAACCTCAGCAATTGTAGCTGAGGACAGTGCCTTCAGCACATCTT  1000
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GCGGGCAACCTCAGCAATTGTAGCTGA-GACAGTGCCTTCAGCACATCTT  996

seq1  CAAAAGAGTGAAGAGTAAGGAAACATTGTAAATATACTGCATTTCTACAT  1050
      | |||||||| ||||||  | |||| ||||||| |||||||||||||| |
seq2  C-AAAGAGTG-AGAGTA--GGAACA-TGTAAAT-TACTGCATTTCTAC-T  1039

seq1  AGTTCCACATATTACAAAGTCAAATTTATAACTCAAAGAAAAATTTAGAA  1100
      |||||| ||| |||| |||||||| |||| ||||||   |||||||||||
seq2  AGTTCC-CAT-TTAC-AAGTCAAA-TTAT-ACTCAA--GAAAATTTAGAA  1082

seq1  AACAGAAATATAAATAAACTGTC  1123
      ||||||||||||   | ||||||
seq2  AACAGAAATATA---ATACTGTC  1102

seq1: chr1_72717989_72719093
seq2: B6Ng01-058E06.g_69_1159 (reverse)

seq1  TACGTGCATAAAAATAAACATTAAGACATTTCCCAGTATATCCTTGGGCT  50
      ||||||||||||   ||| | | |||| ||||||||||||| ||||||||
seq2  TACGTGCATAAA---AAATACTTAGACCTTTCCCAGTATAT-CTTGGGCT  46

seq1  GTTGTACTCAGAAAATGTCTTCCAAGATTGGTGCTGACACCATTTTGAAC  100
      ||||||||||||||  | ||  | ||||  ||||||||||||||||||||
seq2  GTTGTACTCAGAAA--GCCT--CCAGAT--GTGCTGACACCATTTTGAAC  90

seq1  AAATAGTTGGACATCATTTTTTTAAAGTATGTGTGTGTGTGTGTGTGTGT  150
      |||||||||||||||| |||||||||||||||| ||| ||||||||||||
seq2  AAATAGTTGGACATCA-TTTTTTAAAGTATGTG-GTG-GTGTGTGTGTGT  137

seq1  GTGTGTGTGTGTGTGGGTAGTGTCGTGTTTCTGTGAATGTGTGTTTTGTG  200
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTGTGTGTGTGTGTGGGTAGTGTCGTGTTTCTGAGAATGTGTGTTTTGTG  187

seq1  TGTGTGCATTCATAAGCATAATCATTTGTTTATATGTATATAGTGTTATA  250
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGTGTGCATTCATAAGCAT-ATCATTTGTTTATATGTATATAGTGTTATA  236

seq1  GTGTTTGCATGAAAATGTTTTGTGTGTGTAAATTCATGTCCATTTCTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGCATGAAAATGTTTTGTGTGTGTAAATTCATGTCCATTTCTGTA  286

seq1  TGTTGTGTTTGAGTGAATGGCTTTGTGTGTGTACCCACATGTGATTTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGTTTGAGTGAATGGCTTTGTGTGTGTACCCACATGTGATTTGTG  336

seq1  TGTCTATGTTTGTTTTGTGTGTGTGCATTCATGTGTAGTTTGTGTGTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATGTTTGTTTTGTGTGTGTGCATTCATGTGTAGTTTGTGTGTTTG  386

seq1  TGTGAATGTGTGTTTTGTTTGTTCATAAATGTATCTTCGTATTGGGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAATGTGTGTTTTGTTTGTTCATAAATGTATCTTCGTATTGGGAGTT  436

seq1  GGGGTCCAGAGGTCAACATCAAGCTCCTTTCACTATTTCTTCTCTATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCCAGAGGTCAACATCAAGCTCCTTTCACTATTTCTTCTCTATGTT  486

seq1  ACTTTTTTGGTTTGGTTTAGTTTGGTTTGGGGTTTTGGTTTTTTGTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTGGTTTGGTTTAGTTTGGTTTGGGGTTTTGGTTTTTTGTTTTT  536

seq1  TTCTTTTAAAGTTGGCTGGTTGGTTTTGGTTTTTCAAGACAGTTTCTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTAAAGTTGGCTGGTTGGTTTTGGTTTTTCAAGACAGTTTCTCTG  586

seq1  GTTTAGCTCTAGCTGTCCTAGAATGTAGACCAGGCTAGCCTCTGCCTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGCTCTAGCTGTCCTAGAATGTAGACCAGGCTAGCCTCTGCCTCCT  636

seq1  GAGTGACTCTACCTTAATTTCTGAGACAGCATTTCCATTGAACCTGATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGACTCTACCTTAATTTCTGAGACAGCATTTCCATTGAACCTGATGC  686

seq1  GCATCAGTTGATTAGACTGGATGCAGTGAGCTCCAGGAACTGGCCTGCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGTTGATTAGACTGGATGCAGTGAGCTCCAGGAACTGGCCTGCCT  736

seq1  CCTATTTTTATTGTGTCTTGTTTGCCTTGTTTTCCCTTGAGTTCTTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTTTATTGTGTCTTGTTTGCCTTGTTTTCCCTTGAGTTCTTTTCT  786

seq1  GCTGCTTAATCTTCATGAAATATTGGGGGGATTGTGGAATGAGTAAATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTAATCTTCATGAAATATTGGGGGGATTGTGGAATGAGTAAATTT  836

seq1  CCATGTATACATTAAACTAACCTAATAGCCTAATATTTATAGTAATTCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTATACATTAAACTAACCTAATAGCCTAATATTTATAGTAATTCTA  886

seq1  GCTAGAATAAACACAAAGTTGGGGAAATTCTCAAAACAGTTTTGCAAACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGAATAAACACAAAGTTGGGGAAATTCTCAAAACAGTTTTGCAAACC  936

seq1  TGAGTGCCAGGGTTACAAACAGGCCACAATGCCCAACTTTACTTGTGTGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGCCAGGGTTACAAACAGGCCACAATGCCCAACTTTACTTGTGTGC  986

seq1  TTAGCATCTGAATTCAGGCCACAATGCCCAACTTTACTTGTGTGCTTAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATCTGAATTCAGGCCACAATGCCCAACTTTACTTGTGTGCTTAGC  1036

seq1  ATCTGAATTCAGGCCACAATGCCCAACTTTACTTGTGTGCTTAGCATCTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAATTCAGGCCACAATGCCCAACTTTACTTGTGTGCTTAGCATCTG  1086

seq1  AATTC  1105
      |||||
seq2  AATTC  1091