BAC Information

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BAC

Clone NameB6Ng01-058M11
Chromosome1 (Build37)
Map Location 148,571,876 - 148,710,325
singlet/doubletdoublet
Overlap geneB830045N13Rik, LOC100043240
Upstream geneLOC383571
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058M11.bB6Ng01-058M11.g
ACCDH880263DH880264
length1,1191,089
definitionDH880263|Mus musculus domesticus DNA, BAC clone: B6Ng01-058M11, 5' end.DH880264|Mus musculus domesticus DNA, BAC clone: B6Ng01-058M11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,709,187 - 148,710,325)(148,571,876 - 148,572,970)
sequence
gaattctgtgcaatgaaagtatacatggaaagatgagcaaatcaagaaag
ctgctagagctgaaaacagtgtctggaaagaccacagatcaagctggact
tctagtttctctgctcgtgatagacagctatgattgtcatagctacttca
agttgctccttataacttgactgtaggaagagaattaaatttcataataa
tatgtgttgtggatagccctggggctaattatatttgatgttaattccat
tcttctgtgaagggttgtgaacaagaaaagactcaacactcaggtgattt
cctgtaaacctgcttcccaccacaatttgttaaataaaggagagctgatg
attgggcagataaagggaaggtggagcagaaggtggagagagaaagaaga
aggaaaaaatggaagagggagaggacatagaggaagaggaagaagaagaa
aaacagagcagaagcatatggcctggagaattgcaagttctaaggggcct
catagatgtggaagatggtagtgtagtggtagatctgccaaatctaggtg
cacagcatgtattcatattaattcagtcgtgttttcattgccttggctta
tttgggttggagatttactgcaaaacatatgaggtaaaaccaaagaccta
ctaagtagcaaatgaagcataatttaataataactgcatatataattaat
gaattagatgcacagaataaaataaattgtatctttcaaaaaagacaagg
tattcaggtgtagttcaatagtagaacacttgaatagagcaagaggaata
caatgtttgatttttatctaccttatccccatcaaagaaagaataacaca
ctaatgcaacaaaatgctcaaatgataattaatgcctcagacttcaaatc
atatcacaaaatcttttgagaaaattggatatagaagtaaaataaatcat
ttcacaaatgataaatcattgctcgtgatccttcaaaagagcatattatg
aaaatatagacatttttaaggagtcaatatggaaactttttaagcaaatt
tagtcagaatgcttataaagtgtgtatatgtacagggacattttgataat
atgtatgggaacgtgggta
gaattctcaggagatggtatagatttgtttgtgtgggaagctgggagaag
gagatgagttgggaaaaggcaaagtgtaatcagaacacttggcaaaaaaa
gaaaatggacttcaaacaataattgaaataaaataaactcagaaattgaa
taagtggccccgcccccgacccgcgcggggccctgggaggggcgcagcgt
ccggcagcgtcgcgggcggcggggctggggcggcgggaggggcggcgggg
gcagacaaagcggctaatgaatgggcgcgcccgtcgcgctgttcgcagcc
cgcgggcccgtgcagcgcagcgcggagccggcgcctcaggtctctgatgg
gcctagagtttggagcgagaactgggaagcagagctctagaagcatggag
accataagtggccatggtcactgtctcttcaccccatgtctgcacttttt
atgtacctggcttcaaatactttagtttctacttctggttgacctactga
gaggagggcataggaaatgaaggactgtgtgtgccctcaagatggcgggg
ctcctgacttggagaagaggaagaggtctatgctgcacgcattggtttat
acaagaagtatttggttgcagtactcctacagaacagcactccatgccct
gtgacagtgtgcttgtgtgagctttccagtgacattcatggtcagccata
gtaaacagcctagaaaatgagattatgaaagagtgaataaaatctacatt
agggttcacaagtggacattataagcagtttttattaacgtaagatgtca
ggatgataaagcaaccaggataattatggttggtcatggaagataagcaa
gaaaattgtcccaagggggacagtgattttgtttctgacaaagtaatttc
aaaacagaggagaagatgatgatcaactcttgtcacagtttggaacaagt
ggactttaaagtgagcagaagatatgaagacagacagacgtggcgatgaa
caagtagaaatcagccagcgagctgtgcctgtcagccttctgggaagtct
aagctgccgagaagaggatgagactatgcctcaactctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_148709187_148710325
seq2: B6Ng01-058M11.b_46_1164 (reverse)

seq1  TACCCACTGTCTCCATACAATATTATCAAAATGTTGCCTGATACATAATC  50
      ||||||| ||  |||||| |||||||||||||| | |||| ||||||  |
seq2  TACCCAC-GTTCCCATAC-ATATTATCAAAATG-TCCCTG-TACATATAC  46

seq1  ACAACTTTATAAGCATTTACTGACTAAATTTGCTTATATAAGTTTTCCAT  100
      || ||||||||||||||  ||||||||||||||||| | ||| |||||||
seq2  AC-ACTTTATAAGCATT--CTGACTAAATTTGCTTA-AAAAG-TTTCCAT  91

seq1  AATTGAACTCCTTAAAAATTGTCTATATTTTCATATATTGCTCTTTTGAA  150
       |||| |||||||||||| ||||||||||||||||   ||||||||||||
seq2  -ATTG-ACTCCTTAAAAA-TGTCTATATTTTCATAATATGCTCTTTTGAA  138

seq1  GGATCA-GAGCAATGATTTATCATTTGTTGAAATGATTTTATTTTTACTT  199
      |||||| |||||||||||||||||||| |||||||||||   ||||||||
seq2  GGATCACGAGCAATGATTTATCATTTG-TGAAATGATTT--ATTTTACTT  185

seq1  CTATAATCCAATTTTCTCAAAAGATTTTGTGGATATTGATTTTGAAGTCT  249
      |||| ||||||||||||||||||||||||| |||| ||| ||||||||| 
seq2  CTAT-ATCCAATTTTCTCAAAAGATTTTGT-GATA-TGA-TTTGAAGTC-  230

seq1  TGAGGCATTAATTATGATTTGAGCATTTTGTTGCATTAGTGTGTTATTCT  299
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TGAGGCATTAATTATCATTTGAGCATTTTGTTGCATTAGTGTGTTATTCT  280

seq1  TTCTTTGATGGGGATAAGGTAGATTAAAAATCAAACATTGTATTCCTCTT  349
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTCTTTGATGGGGATAAGGTAGA-TAAAAATCAAACATTGTATTCCTCTT  329

seq1  GCTCTATTCAAGTGTTCTACTATTGAACTACACCTGAATACCTTGTCTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTATTCAAGTGTTCTACTATTGAACTACACCTGAATACCTTGTCTTT  379

seq1  TTTGAAAGATACAATTTATTTTATTCTGTGCATCTAATTCATTAATTATA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAAGATACAATTTATTTTATTCTGTGCATCTAATTCATTAATTATA  429

seq1  TATGCAGTTATTATTAAATTATGCTTCATTTGCTACTTAGTAGGTCTTTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGTTATTATTAAATTATGCTTCATTTGCTACTTAGTAGGTCTTTG  479

seq1  GTTTTACCTCATATGTTTTGCAGTAAATCTCCAACCCAAATAAGCCAAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTACCTCATATGTTTTGCAGTAAATCTCCAACCCAAATAAGCCAAGG  529

seq1  CAATGAAAACACGACTGAATTAATATGAATACATGCTGTGCACCTAGATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAAACACGACTGAATTAATATGAATACATGCTGTGCACCTAGATT  579

seq1  TGGCAGATCTACCACTACACTACCATCTTCCACATCTATGAGGCCCCTTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGATCTACCACTACACTACCATCTTCCACATCTATGAGGCCCCTTA  629

seq1  GAACTTGCAATTCTCCAGGCCATATGCTTCTGCTCTGTTTTTCTTCTTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGCAATTCTCCAGGCCATATGCTTCTGCTCTGTTTTTCTTCTTCT  679

seq1  TCCTCTTCCTCTATGTCCTCTCCCTCTTCCATTTTTTCCTTCTTCTTTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTCCTCTATGTCCTCTCCCTCTTCCATTTTTTCCTTCTTCTTTCT  729

seq1  CTCTCCACCTTCTGCTCCACCTTCCCTTTATCTGCCCAATCATCAGCTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCACCTTCTGCTCCACCTTCCCTTTATCTGCCCAATCATCAGCTCT  779

seq1  CCTTTATTTAACAAATTGTGGTGGGAAGCAGGTTTACAGGAAATCACCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATTTAACAAATTGTGGTGGGAAGCAGGTTTACAGGAAATCACCTG  829

seq1  AGTGTTGAGTCTTTTCTTGTTCACAACCCTTCACAGAAGAATGGAATTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGAGTCTTTTCTTGTTCACAACCCTTCACAGAAGAATGGAATTAA  879

seq1  CATCAAATATAATTAGCCCCAGGGCTATCCACAACACATATTATTATGAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAATATAATTAGCCCCAGGGCTATCCACAACACATATTATTATGAA  929

seq1  ATTTAATTCTCTTCCTACAGTCAAGTTATAAGGAGCAACTTGAAGTAGCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAATTCTCTTCCTACAGTCAAGTTATAAGGAGCAACTTGAAGTAGCT  979

seq1  ATGACAATCATAGCTGTCTATCACGAGCAGAGAAACTAGAAGTCCAGCTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAATCATAGCTGTCTATCACGAGCAGAGAAACTAGAAGTCCAGCTT  1029

seq1  GATCTGTGGTCTTTCCAGACACTGTTTTCAGCTCTAGCAGCTTTCTTGAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTGGTCTTTCCAGACACTGTTTTCAGCTCTAGCAGCTTTCTTGAT  1079

seq1  TTGCTCATCTTTCCATGTATACTTTCATTGCACAGAATTC  1139
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCATCTTTCCATGTATACTTTCATTGCACAGAATTC  1119

seq1: chr1_148571876_148572970
seq2: B6Ng01-058M11.g_68_1156

seq1  GAATTCTCAGGAGATGGTATAGATTTGTTTGTGTGGGAAGCTGGGAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGAGATGGTATAGATTTGTTTGTGTGGGAAGCTGGGAGAAG  50

seq1  GAGATGAGTTGGGAAAAGGCAAAGTGTAATCAGAACACTTGGCAAAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGAGTTGGGAAAAGGCAAAGTGTAATCAGAACACTTGGCAAAAAAA  100

seq1  GAAAATGGACTTCAAACAATAATTGAAATAAAATAAACTCAGAAATTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGGACTTCAAACAATAATTGAAATAAAATAAACTCAGAAATTGAA  150

seq1  TAAGTGGCCCCGCCCCCGACCCGCGCGGGGCCCTGGGAGGGGCGCAGCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGGCCCCGCCCCCGACCCGCGCGGGGCCCTGGGAGGGGCGCAGCGT  200

seq1  CCGGCAGCGTCGCGGGCGGCGGGGCTGGGGCGGCGGGAGGGGCGGCGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGCAGCGTCGCGGGCGGCGGGGCTGGGGCGGCGGGAGGGGCGGCGGGG  250

seq1  GCAGACAAAGCGGCTAATGAATGGGCGCGCCCGTCGCGCTGTTCGCAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACAAAGCGGCTAATGAATGGGCGCGCCCGTCGCGCTGTTCGCAGCC  300

seq1  CGCGGGCCCGTGCAGCGCAGCGCGGAGCCGGCGCCTCAGGTCTCTGATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGGGCCCGTGCAGCGCAGCGCGGAGCCGGCGCCTCAGGTCTCTGATGG  350

seq1  GCCTAGAGTTTGGAGCGAGAACTGGGAAGCAGAGCTCTAGAAGCATGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGAGTTTGGAGCGAGAACTGGGAAGCAGAGCTCTAGAAGCATGGAG  400

seq1  ACCATAAGTGGCCATGGTCACTGTCTCTTCACCCCATGTCTGCACTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATAAGTGGCCATGGTCACTGTCTCTTCACCCCATGTCTGCACTTTTT  450

seq1  ATGTACCTGGCTTCAAATACTTTAGTTTCTACTTCTGGTTGACCTACTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACCTGGCTTCAAATACTTTAGTTTCTACTTCTGGTTGACCTACTGA  500

seq1  GAGGAGGGCATAGGAAATGAAGGACTGTGTGTGCCCTCAAGATGGCGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGGGCATAGGAAATGAAGGACTGTGTGTGCCCTCAAGATGGCGGGG  550

seq1  CTCCTGACTTGGAGAAGAGGAAGAGGTCTATGCTGCACGCATTGGTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGACTTGGAGAAGAGGAAGAGGTCTATGCTGCACGCATTGGTTTAT  600

seq1  ACAAGAAGTATTTGGTTGCAGTACTCCTACAGAACAGCACTCCATGCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAGTATTTGGTTGCAGTACTCCTACAGAACAGCACTCCATGCCCT  650

seq1  GTGACAGTGTGCTTGTGTGAGCTTTCCAGTGACATTCATGGTCAGCCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGTGTGCTTGTGTGAGCTTTCCAGTGACATTCATGGTCAGCCATA  700

seq1  GTAAACAGCCTAGAAAATGAGATTATGAAAGAGTGAATAAAATCTACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACAGCCTAGAAAATGAGATTATGAAAGAGTGAATAAAATCTACATT  750

seq1  AGGGTTCACAAGTGGACATTATAAGCAGTTTTTATTAACGTAAGATGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTCACAAGTGGACATTATAAGCAGTTTTTATTAACGTAAGATGTCA  800

seq1  GGATGATAAAGCAACCAGGATAATTATGGTTGGTCATGGAGGATAAGCAA  850
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GGATGATAAAGCAACCAGGATAATTATGGTTGGTCATGGAAGATAAGCAA  850

seq1  GAAACTTGTCCCAAGGGGGACAGTGATTTTGTTTCTGACAAAGTAAATTT  900
      |||| ||||||||||||||||||||||||||||||||||||||| |||||
seq2  GAAAATTGTCCCAAGGGGGACAGTGATTTTGTTTCTGACAAAGT-AATTT  899

seq1  CAAAACAGAGGAGGAAGATGATGATCAAACTCCTTGTCACAGTTTGGAAC  950
      |||||||||||| ||||||||||||| |||| ||||||||||||||||||
seq2  CAAAACAGAGGA-GAAGATGATGATC-AACT-CTTGTCACAGTTTGGAAC  946

seq1  AAGTGGACTTTAAAAGTGAGTCAGAGGATATG-AGACAGACAGACAGTGG  999
      ||||||||||| |||||||| |||| |||||| |||||||||||| ||||
seq2  AAGTGGACTTT-AAAGTGAG-CAGAAGATATGAAGACAGACAGAC-GTGG  993

seq1  CGATGAACAGGCAGACATCAGGGCAGCGAGCTGTGCCTGTCAGCCCTCTG  1049
      ||||||||| | ||| |||| | |||||||||||||||||||||| ||||
seq2  CGATGAACAAGTAGAAATCA-GCCAGCGAGCTGTGCCTGTCAGCCTTCTG  1042

seq1  GGAAGTTCTTAGCTGCCGAGAGTGAGGAT--GACTATGGCTC-ACTCTT  1095
      ||||| ||| |||||||||||  ||||||  ||||||| ||| ||||||
seq2  GGAAG-TCTAAGCTGCCGAGA-AGAGGATGAGACTATGCCTCAACTCTT  1089