BAC Information

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BAC

Clone NameB6Ng01-058O24
Chromosome1 (Build37)
Map Location 45,202,841 - 45,301,151
singlet/doubletdoublet
Overlap geneLOC383640
Upstream geneErcc5, 4832428D23Rik, LOC435619, Txn-ps1, Gulp1, LOC100041738, LOC100041752
Downstream geneCol3a1, Col5a2, EG666799, LOC631429, LOC666814, EG666819, Wdr75, EG433297, LOC383644, Slc40a1, LOC670603, EG227054, LOC100042453, EG212225, Dnahc7b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058O24.bB6Ng01-058O24.g
ACCDH880378DH880379
length9171,065
definitionDH880378|Mus musculus domesticus DNA, BAC clone: B6Ng01-058O24, 5' end.DH880379|Mus musculus domesticus DNA, BAC clone: B6Ng01-058O24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,300,236 - 45,301,151)(45,202,841 - 45,203,919)
sequence
gaattccagccatactagtctctaacatggaaaatatatttattcatttt
taatagcaatttttcatgtaatatccacctaaactactggttttactaaa
agaaaattggggtcaagtttggttttattagttttcaaattctattgtag
caagcaaaaacttaaaattatatctttaataagaaaaagtttagtcaatc
aaaaatctttgattttaccctcaaattttatcatagtgcagtaaagctaa
agtcaaattttattctggggtgttggttgaaatatgtccaaccaagctaa
gctcatccttgtttcgtaaggcagtagaccttcattttccactgtcaagt
tcaggttctacaggtcatggtagttattggctaaatatttgacatttcta
aaccaacaagggcactgtaaagatttcttttgtgttttgagtttgtgact
ttctctgttgtaaaaaggatacacgaggatattttggcttttaatcataa
ttatatgtagcttagatttccttgtgggaccattagaatgattgaactat
cttaagagtcaacggtgtaataatatctattcactataagaaaaatattt
atctgatgtctttattatttcaatggaaaattaaaataacatgattattt
tcagctattggatggatcacagggccctcaatggaggagctagagaaagt
atgcaaggagctaaagggggtctgcaaccctataggtggaacaacaatat
gaactaaccagtatccccagagcttgtgtctctagctgcatatgtatcag
aagatggcctagtcagccatcattggaaagagaggcccattggtcttgca
aactttatacgcctcagtataggggaacgccagggccaaaagtgggagtg
ggttggtaggtgagtga
gaattcaacgatgtgaaaatggaaggaacatttagtgaatgagtaacaac
aataaaatatcatagagacaaaaccaaagcatctttcctcttataacact
ttcatgtaaagggtaaaggaaaatataatccagtacattcaaatactaaa
attctaaaagagaaatctgattctgatgtatgagaagattttgattatat
atggaacatttttaaagttttaagtcctatgtctactagtgttcaaggaa
aatccaacaatatagtactcaggcctcagaattttctcttttcatgtaca
cctttcatgtattctgatttttttagcataatgtttatatttatatatta
gataattttagacaaaagcatatggccacaatcaaagctctactcaatca
cctggctcaactttcttttcttgaattttgtggcatctgttcagagaacg
cacaaaaagttatatacataagtgacccccaaaattctaacatagaactc
ctaaaatttataaacaatttcagaaaagtgattattgagaaggcagaaag
aagatgcaagagacatatatgggaaagctacttgtcattaccatgccagc
cacaagtgtatttttctcactgtcttttcaggcaagcatgatcaactcca
ggatgttaaacaatgaccacaaatgcttacatggcgagtttatggtacac
agtattgttatgcccagttcacaagacccccaagagactgccatggacca
caactcctgtgcaagcacatgagagtctttattcaagcttgagcttgggc
tacaaaccttcctgataacacaggaaggagagtgacacccagctcctggt
gaagggtgtttataaaggaaaattgaaagctgggtttctaagccttggga
attacatgagaggtgaggaatatggtctctttcccagaacccaaggtgtg
ggcatatcacttcaggacagcagacagtatctttttaacagtagctttct
cgaggacagcatttaaactagagtttagagacaagatggatctgtcctcc
tgattcttgcctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_45300236_45301151
seq2: B6Ng01-058O24.b_50_965 (reverse)

seq1  CACTCACCTACCAACCCACTCCCACTTTTTGGCCCTGGCGTTCCCCTATA  50
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CACTCACCTACCAACCCACTCCCAC-TTTTGGCCCTGGCGTTCCCCTATA  49

seq1  CTGAGGCGTATAAAGTTTGCAAGACCAATGGGCCTCTCTTTCCAATGATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCGTATAAAGTTTGCAAGACCAATGGGCCTCTCTTTCCAATGATG  99

seq1  GCTGACTAGGCCATCTTCTGATACATATGCAGCTAGAGACACAAGCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTAGGCCATCTTCTGATACATATGCAGCTAGAGACACAAGCTCTG  149

seq1  GGGATACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGA-CC  199
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGGATACTGGTTAGTTCATATTGTTGTTCCACCTATAGGGTTGCAGACCC  199

seq1  CCTTTAGCTCCTTGCATACTTTCTCTAGCTCCTCCATTGAGGGCCCTGTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAGCTCCTTGCATACTTTCTCTAGCTCCTCCATTGAGGGCCCTGTG  249

seq1  ATCCATCCAATAGCTGAAAATAATCATGTTATTTTAATTTTCCATTGAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCCAATAGCTGAAAATAATCATGTTATTTTAATTTTCCATTGAAA  299

seq1  TAATAAAGACATCAGATAAATATTTTTCTTATAGTGAATAGATATTATTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAGACATCAGATAAATATTTTTCTTATAGTGAATAGATATTATTA  349

seq1  CACCGTTGACTCTTAAGATAGTTCAATCATTCTAATGGTCCCACAAGGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTTGACTCTTAAGATAGTTCAATCATTCTAATGGTCCCACAAGGAA  399

seq1  ATCTAAGCTACATATAATTATGATTAAAAGCCAAAATATCCTCGTGTATC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGCTACATATAATTATGATTAAAAGCCAAAATATCCTCGTGTATC  449

seq1  CTTTTTACAACAGAGAAAGTCACAAACTCAAAACACAAAAGAAATCTTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTACAACAGAGAAAGTCACAAACTCAAAACACAAAAGAAATCTTTA  499

seq1  CAGTGCCCTTGTTGGTTTAGAAATGTCAAATATTTAGCCAATAACTACCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCCCTTGTTGGTTTAGAAATGTCAAATATTTAGCCAATAACTACCA  549

seq1  TGACCTGTAGAACCTGAACTTGACAGTGGAAAATGAAGGTCTACTGCCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGTAGAACCTGAACTTGACAGTGGAAAATGAAGGTCTACTGCCTT  599

seq1  ACGAAACAAGGATGAGCTTAGCTTGGTTGGACATATTTCAACCAACACCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAAACAAGGATGAGCTTAGCTTGGTTGGACATATTTCAACCAACACCC  649

seq1  CAGAATAAAATTTGACTTTAGCTTTACTGCACTATGATAAAATTTGAGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAAAATTTGACTTTAGCTTTACTGCACTATGATAAAATTTGAGGG  699

seq1  TAAAATCAAAGATTTTTGATTGACTAAACTTTTTCTTATTAAAGATATAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCAAAGATTTTTGATTGACTAAACTTTTTCTTATTAAAGATATAA  749

seq1  TTTTAAGTTTTTGCTTGCTACAATAGAATTTGAAAACTAATAAAACCAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTTTTTGCTTGCTACAATAGAATTTGAAAACTAATAAAACCAAA  799

seq1  CTTGACCCCAATTTTCTTTTAGTAAAACCAGTAGTTTAGGTGGATATTAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACCCCAATTTTCTTTTAGTAAAACCAGTAGTTTAGGTGGATATTAC  849

seq1  ATGAAAAATTGCTATTAAAAATGAATAAATATATTTTCCATGTTAGAGAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAAATTGCTATTAAAAATGAATAAATATATTTTCCATGTTAGAGAC  899

seq1  TAGTATGGCTGGAATTC  916
      |||||||||||||||||
seq2  TAGTATGGCTGGAATTC  916

seq1: chr1_45202841_45203919
seq2: B6Ng01-058O24.g_69_1133

seq1  GAATTCAACGATGTGAAAATGGAAGGAACATTTAGTGAATGAGTAACAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACGATGTGAAAATGGAAGGAACATTTAGTGAATGAGTAACAAC  50

seq1  AATAAAATATCATAGAGACAAAACCAAAGCATCTTTCCTCTTATAACACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATATCATAGAGACAAAACCAAAGCATCTTTCCTCTTATAACACT  100

seq1  TTCATGTAAAGGGTAAAGGAAAATATAATCCAGTACATTCAAATACTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTAAAGGGTAAAGGAAAATATAATCCAGTACATTCAAATACTAAA  150

seq1  ATTCTAAAAGAGAAATCTGATTCTGATGTATGAGAAGATTTTGATTATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAAAAGAGAAATCTGATTCTGATGTATGAGAAGATTTTGATTATAT  200

seq1  ATGGAACATTTTTAAAGTTTTAAGTCCTATGTCTACTAGTGTTCAAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACATTTTTAAAGTTTTAAGTCCTATGTCTACTAGTGTTCAAGGAA  250

seq1  AATCCAACAATATAGTACTCAGGCCTCAGAATTTTCTCTTTTCATGTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAACAATATAGTACTCAGGCCTCAGAATTTTCTCTTTTCATGTACA  300

seq1  CCTTTCATGTATTCTGATTTTTTTAGCATAATGTTTATATTTATATATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCATGTATTCTGATTTTTTTAGCATAATGTTTATATTTATATATTA  350

seq1  GATAATTTTAGACAAAAGCATATGGCCACAATCAAAGCTCTACTCAATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTTTAGACAAAAGCATATGGCCACAATCAAAGCTCTACTCAATCA  400

seq1  CCTGGCTCAACTTTCTTTTCTTGAATTTTGTGGCATCTGTTCAGAGAACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTCAACTTTCTTTTCTTGAATTTTGTGGCATCTGTTCAGAGAACG  450

seq1  CACAAAAAGTTATATACATAAGTGACCCCCAAAATTCTAACATAGAACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAAGTTATATACATAAGTGACCCCCAAAATTCTAACATAGAACTC  500

seq1  CTAAAATTTATAAACAATTTCAGAAAAGTGATTATTGAGAAGGCAGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATTTATAAACAATTTCAGAAAAGTGATTATTGAGAAGGCAGAAAG  550

seq1  AAGATGCAAGAGACATATATGGGAAAGCTACTTGTCATTACCATGCCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGCAAGAGACATATATGGGAAAGCTACTTGTCATTACCATGCCAGC  600

seq1  CACAAGTGTATTTTTCTCACTGTCTTTTCAGGCAAGCATGATCAACTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTGTATTTTTCTCACTGTCTTTTCAGGCAAGCATGATCAACTCCA  650

seq1  GGATGTTAAACAATGACCACAAATGCTTACATGGCGAGTTTATGGTACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTAAACAATGACCACAAATGCTTACATGGCGAGTTTATGGTACAC  700

seq1  AGTATTGTTATGCCCAGTTCACAAGACCCCCAAGAGACTGCCATGGACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGTTATGCCCAGTTCACAAGACCCCCAAGAGACTGCCATGGACCA  750

seq1  CAACTCCTGTGCAAGCACATGAGAGTCTTTATTCAAGCTTGAGCTTGGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCCTGTGCAAGCACATGAGAGTCTTTATTCAAGCTTGAGCTTGGGC  800

seq1  TACAAACCTTCCTGATAACACAGGAAGGAGAGTGACACCCAGCTCCTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAACCTTCCTGATAACACAGGAAGGAGAGTGACACCCAGCTCCTGGT  850

seq1  GAAGGGTGTTTATAAAGGAAAAATTGAAAGCTGGGTTTCTAAGCCTTGGG  900
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GAAGGGTGTTTATAAAGG-AAAATTGAAAGCTGGGTTTCTAAGCCTTGGG  899

seq1  AATTACATGAGAGGGTGAAGGAATATTGGTCTCTTTCCCAGAACCCAAGG  950
      |||||||||||| |||| ||||||| |||||||||||||||||||||| |
seq2  AATTACATGAGA-GGTG-AGGAATA-TGGTCTCTTTCCCAGAACCCAA-G  945

seq1  GTGTGGGCAATATCACTTCAGGGACAGCAGACAGTATCTTTTTAAACAGT  1000
      |||||||| ||||||||||| |||||||||||||||||||||| ||||||
seq2  GTGTGGGC-ATATCACTTCA-GGACAGCAGACAGTATCTTTTT-AACAGT  992

seq1  AGCTTTCTTCGAGGACAGCATTTTAAACTAGAGTTTAGAGGACAAGATGG  1050
      ||||||| |||||||||||| |||||||||||||||||| ||||||||||
seq2  AGCTTTC-TCGAGGACAGCA-TTTAAACTAGAGTTTAGA-GACAAGATGG  1039

seq1  AATCTGTCCTCCTGGTTTCTTTGCCTCTT  1079
       ||||||||||||| ||   |||||||||
seq2  -ATCTGTCCTCCTGATT--CTTGCCTCTT  1065