BAC Information

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BAC

Clone NameB6Ng01-059A07
Chromosome1 (Build37)
Map Location 121,566,165 - 121,697,437
singlet/doubletdoublet
Overlap genePtpn4, LOC100042447
Upstream geneTcfcp2l1, LOC100041753, Gli2, LOC666838, LOC100041778, Inhbb, Ralb, Tmem185b, Epb4.1l5
Downstream geneLOC666870, LOC100041863, Tmem177, Gm101, Sctr, Tmem37, Dbi, 3110009E18Rik, Steap3, C1ql2, Marco, En1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059A07.bB6Ng01-059A07.g
ACCDH880436DH880437
length1,0051,070
definitionDH880436|Mus musculus domesticus DNA, BAC clone: B6Ng01-059A07, 5' end.DH880437|Mus musculus domesticus DNA, BAC clone: B6Ng01-059A07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,566,165 - 121,566,886)(121,696,351 - 121,697,437)
sequence
gaattcctgcttgtatcatcacgttttatccacagtttcctctaagagtt
tctggttctcaagtcttatataatggtttctgattcattttaagttgata
tttatgaagcatgagaggtatgagtccagtttctttcttttaaaagctgg
catccagatttttcagcaccatgtattgaggaggttgtctggttacgttc
tgacaactcatttgtcagaaagccaattgaagaactgactccatcagttt
agcctatgggcttcggggtactttcttaattgctgattgatataggagga
cccagactagtgtgggtagtgccaacccttggcaggtgttcctaggctat
ttaagaaaagtagcttagcaagtcagtaggagtgagtgagtaaccattgt
gatgcttcttcagcttctgaccccagaatcctgctgtgagtcttgccccg
acttccctccatgagggacataaaataaaataaattctgtaccaagttgc
ttctgatcactgtttactcacagcaaaagaaaatcaaactaaagcagaaa
ctggtactaaaagtgaagccttactgtgatggacctcactatgtagtttt
tatgccttgggatgtcttatggtagaaaggtggagggttttgagctttgg
tctggaaaagacattgagtgctcggagcctaatgagtcgtaggaaaatca
tgctgagagaaacaaagataatagaggcctagcttgtgaagtttcagaga
aaggtttggaatccttgaaaacagtctattggggctgttgatatattttt
aattaaaaattggctgtttctaatcagctggggatgaagaataatccgtg
attatcaagagatcaacactacccaagttaaaactatgttgtcacacttg
taaaatggtagatgtaattgtgtgcatttactctggttctattactctag
ccactggtctgtgtctgttcatgccaggatcccactgcgtttgtcactac
agttg
gaattctccttcataaatatttctgattaagataaaccgcatgcattaga
taattgataaagaaaacgaggctttttcctttgttatagattcatattaa
aattcttttggaggtgtacacttaatcttattttcagttaatataaaatt
ttagtttctgtttcaatttatagtctgtatttgtttcaaaatattatgga
caaatttgctgtttaaaatcttgcataatttttttcttaaatgaataaat
tgttataatttagttgaccataatatactgttatgctgtttctcaatgta
gtatcattgtactaattttaggtgcagacatgcttaaccactagttccaa
tagagatattaagataagaacttccatgctagaaaacattctttggtatc
acctcaggtcatcagaaaattcaaatatcatggaacagtgtttatgagaa
atgcctgctgatatgtaatatacttattcctttgggtaattggatccatg
acatccaaacggagagagttatgctcttttgtgtagatggtgttcatttt
aacttaggcgaatagctttccagttatatactttgccacctctgtgaggt
agaaacaactagttggggatttgacagttctgatcctgagtatttcataa
tatttgtttattcctcttaagtctcagaaatccatattgtggtcagcttg
tggtagggacacctagcactctcttttcacggagaacactgagttttctt
tgatgatgaccaaacaatgacttgtgacatcatctactagtctttccttt
tcatattgtgtgctgtgcagggtctaattgtgtacattgagttcttcagc
cttccaaatgctaagatgatagtgtactctaccacacctagcttccttaa
aagctggaactcaagtgatgtgttattatcacaagcctgcttttcccaac
tggtagtcatcctgtgaaagctatcctttatcttttctggaggaaattga
catagaaggtaaaaagtaaggtatttctttcctggatcttcttcttgtta
tttcttgtctgacatagtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_121566165_121566886
seq2: B6Ng01-059A07.b_47_768

seq1  GAATTCCTGCTTGTATCATCACGTTTTATCCACAGTTTCCTCTAAGAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCTTGTATCATCACGTTTTATCCACAGTTTCCTCTAAGAGTT  50

seq1  TCTGGTTCTCAAGTCTTATATAATGGTTTCTGATTCATTTTAAGTTGATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTCTCAAGTCTTATATAATGGTTTCTGATTCATTTTAAGTTGATA  100

seq1  TTTATGAAGCATGAGAGGTATGAGTCCAGTTTCTTTCTTTTAAAAGCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGAAGCATGAGAGGTATGAGTCCAGTTTCTTTCTTTTAAAAGCTGG  150

seq1  CATCCAGATTTTTCAGCACCATGTATTGAGGAGGTTGTCTGGTTACGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGATTTTTCAGCACCATGTATTGAGGAGGTTGTCTGGTTACGTTC  200

seq1  TGACAACTCATTTGTCAGAAAGCCAATTGAAGAACTGACTCCATCAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACTCATTTGTCAGAAAGCCAATTGAAGAACTGACTCCATCAGTTT  250

seq1  AGCCTATGGGCTTCGGGGTACTTTCTTAATTGCTGATTGATATAGGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTATGGGCTTCGGGGTACTTTCTTAATTGCTGATTGATATAGGAGGA  300

seq1  CCCAGACTAGTGTGGGTAGTGCCAACCCTTGGCAGGTGTTCCTAGGCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGACTAGTGTGGGTAGTGCCAACCCTTGGCAGGTGTTCCTAGGCTAT  350

seq1  TTAAGAAAAGTAGCTTAGCAAGTCAGTAGGAGTGAGTGAGTAACCATTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAAAGTAGCTTAGCAAGTCAGTAGGAGTGAGTGAGTAACCATTGT  400

seq1  GATGCTTCTTCAGCTTCTGACCCCAGAATCCTGCTGTGAGTCTTGCCCCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTCTTCAGCTTCTGACCCCAGAATCCTGCTGTGAGTCTTGCCCCG  450

seq1  ACTTCCCTCCATGAGGGACATAAAATAAAATAAATTCTGTACCAAGTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCTCCATGAGGGACATAAAATAAAATAAATTCTGTACCAAGTTGC  500

seq1  TTCTGATCACTGTTTACTCACAGCAAAAGAAAATCAAACTAAAGCAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATCACTGTTTACTCACAGCAAAAGAAAATCAAACTAAAGCAGAAA  550

seq1  CTGGTACTAAAAGTGAAGCCTTACTGTGATGGACCTCACTATGTAGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACTAAAAGTGAAGCCTTACTGTGATGGACCTCACTATGTAGTTTT  600

seq1  TATGCCTTGGGATGTCTTATGGTAGAAAGGTGGAGGGTTTTGAGCTTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCTTGGGATGTCTTATGGTAGAAAGGTGGAGGGTTTTGAGCTTTGG  650

seq1  TCTGGAAAAGACATTGAGTGCTCGGAGCCTAATGAGTCGTAGGAAAATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAAAGACATTGAGTGCTCGGAGCCTAATGAGTCGTAGGAAAATCA  700

seq1  TGCTGAGAGAAACAAAGATAAT  722
      ||||||||||||||||||||||
seq2  TGCTGAGAGAAACAAAGATAAT  722

seq1: chr1_121696351_121697437
seq2: B6Ng01-059A07.g_69_1138 (reverse)

seq1  TCACTATGTCCAGACCAGAGAAATAACAAGAAAGAAGATCCAGGAAAGAT  50
      ||||||||| |||||   |||||||||||| |||||||||||||||||| 
seq2  TCACTATGT-CAGAC--AAGAAATAACAAG-AAGAAGATCCAGGAAAGAA  46

seq1  ATACCTATACTTTTATTACCTTTCTTATGTCAATTTCCCTCCAGAAAAGA  100
      |||||| ||||||  |||||||   ||||||||||| |||||||||||||
seq2  ATACCT-TACTTT--TTACCTT--CTATGTCAATTT-CCTCCAGAAAAGA  90

seq1  TAAAGGAATAGCTTTCACAGGATGACTACCAGTTGGGAAAAAGCAGGCTT  150
      |||||| |||||||||||||||||||||||||||||| ||||||||||||
seq2  TAAAGG-ATAGCTTTCACAGGATGACTACCAGTTGGG-AAAAGCAGGCTT  138

seq1  TGGTGATAATAAACACATCACTTGAGTTCCAGCCTTTTAAGGAAGCTAGG  200
        |||||||| ||||||||||||||||||||| |||||||||||||||||
seq2  --GTGATAAT-AACACATCACTTGAGTTCCAG-CTTTTAAGGAAGCTAGG  184

seq1  TGTGGTAGAGTACACCTATCATCTTAGCATTTGGAAGGCTGAAGAACTCA  250
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGTGGTAGAGTACA-CTATCATCTTAGCATTTGGAAGGCTGAAGAACTCA  233

seq1  ATGTACACAATTAGACCCTGCACAGCACACAATATGAAAAGGAAAGACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACACAATTAGACCCTGCACAGCACACAATATGAAAAGGAAAGACTA  283

seq1  GTAGATGATGTCACAAGTCATTGTTTGGTCATCATCAAAGAAAACTCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGATGTCACAAGTCATTGTTTGGTCATCATCAAAGAAAACTCAGT  333

seq1  GTTCTCCGTGAAAAGAGAGTGCTAGGTGTCCCTACCACAAGCTGACCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCCGTGAAAAGAGAGTGCTAGGTGTCCCTACCACAAGCTGACCACA  383

seq1  ATATGGATTTCTGAGACTTAAGAGGAATAAACAAATATTATGAAATACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGATTTCTGAGACTTAAGAGGAATAAACAAATATTATGAAATACTC  433

seq1  AGGATCAGAACTGTCAAATCCCCAACTAGTTGTTTCTACCTCACAGAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCAGAACTGTCAAATCCCCAACTAGTTGTTTCTACCTCACAGAGGT  483

seq1  GGCAAAGTATATAACTGGAAAGCTATTCGCCTAAGTTAAAATGAACACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAGTATATAACTGGAAAGCTATTCGCCTAAGTTAAAATGAACACCA  533

seq1  TCTACACAAAAGAGCATAACTCTCTCCGTTTGGATGTCATGGATCCAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACACAAAAGAGCATAACTCTCTCCGTTTGGATGTCATGGATCCAATT  583

seq1  ACCCAAAGGAATAAGTATATTACATATCAGCAGGCATTTCTCATAAACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAGGAATAAGTATATTACATATCAGCAGGCATTTCTCATAAACAC  633

seq1  TGTTCCATGATATTTGAATTTTCTGATGACCTGAGGTGATACCAAAGAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCATGATATTTGAATTTTCTGATGACCTGAGGTGATACCAAAGAAT  683

seq1  GTTTTCTAGCATGGAAGTTCTTATCTTAATATCTCTATTGGAACTAGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTAGCATGGAAGTTCTTATCTTAATATCTCTATTGGAACTAGTGG  733

seq1  TTAAGCATGTCTGCACCTAAAATTAGTACAATGATACTACATTGAGAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCATGTCTGCACCTAAAATTAGTACAATGATACTACATTGAGAAAC  783

seq1  AGCATAACAGTATATTATGGTCAACTAAATTATAACAATTTATTCATTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAACAGTATATTATGGTCAACTAAATTATAACAATTTATTCATTTA  833

seq1  AGAAAAAAATTATGCAAGATTTTAAACAGCAAATTTGTCCATAATATTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAAATTATGCAAGATTTTAAACAGCAAATTTGTCCATAATATTTT  883

seq1  GAAACAAATACAGACTATAAATTGAAACAGAAACTAAAATTTTATATTAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAATACAGACTATAAATTGAAACAGAAACTAAAATTTTATATTAA  933

seq1  CTGAAAATAAGATTAAGTGTACACCTCCAAAAGAATTTTAATATGAATCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAATAAGATTAAGTGTACACCTCCAAAAGAATTTTAATATGAATCT  983

seq1  ATAACAAAGGAAAAAGCCTCGTTTTCTTTATCAATTATCTAATGCATGCG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAAAGGAAAAAGCCTCGTTTTCTTTATCAATTATCTAATGCATGCG  1033

seq1  GTTTATCTTAATCAGAAATATTTATGAAGGAGAATTC  1087
      |||||||||||||||||||||||||||||||||||||
seq2  GTTTATCTTAATCAGAAATATTTATGAAGGAGAATTC  1070