BAC Information

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BAC

Clone NameB6Ng01-059D11
Chromosome1 (Build37)
Map Location 138,471,133 - 138,592,575
singlet/doubletdoublet
Overlap geneZfp281
Upstream geneNav1, EG215714, LOC623327, Csrp1, Phlda3, Tnni1, Lad1, Tnnt2, LOC100042477, Pkp1, 9830123M21Rik, Tmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1, 9230116N13Rik, Ddx59, Kif14
Downstream geneLOC667686, EG623818, Nr5a2, Rnu7-ps3, LOC100042567
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059D11.bB6Ng01-059D11.g
ACCDH880561DH880562
length983342
definitionDH880561|Mus musculus domesticus DNA, BAC clone: B6Ng01-059D11, 5' end.DH880562|Mus musculus domesticus DNA, BAC clone: B6Ng01-059D11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,591,590 - 138,592,575)(138,471,133 - 138,471,479)
sequence
gaattcacagccccaggtattgtgggtaattatcccttgcttactccagg
agtagtcagaagtcaggatgtccgtttgtttttgatggaggggactgggc
ctcaggcatgcctggctttcctctaccaccgaacttcctacctgttagaa
tttatgtcctttggtgggaaatgctcaaatccaaaatccattggtctgtc
actaccagttttccaggggagacagggtgaggtagcctcgcttcctactc
acctctttcctggcattacagaatatgccaattccttggcctggcacttg
acctacatgactgagagcttacaaacaggagttgcagtctgaattcagag
tccagtctcctctgtttaatagaccttgggcaaattgtttcacctctctg
agcttcaaggtttctatctgtgaaacagaataaaaggtacctggcttttg
aaagaaaggtttttttctagagcagattaaattggctacgtagccgggca
gtggtgccacatgcctttaatcccagcacttgggaggcagaggcaggctg
attgcagagttcaaggccagcctggtctacagagttccaggacagccagg
gctatacaaaccctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaaaagtggctatgtaaagcctgaagtatgctggctctggggcacacgc
cctaagtgccaagagctggttttccggtgcccttggcccatctttagtta
atacagctttaacacctgggacagaagacagaggaaatggaaagttgggc
tggaaggggagagggcgcctgcggaagcattttacaatggtgaagtgaag
tcgaagcacagacacaaagatcaaagcttcgcaaagtagatgtgggtgtg
ttctcattctgaggagcaggtcctactcccaatctctcctgctgcactaa
gcacccaaggatgggacctcctctctttctccc
attaggttttttattttgttctttttttttttttttttggagacagcgtt
tctctgtggtatccctggctgtcctggaacttgctctgtagaccaggctg
gccttgaacttataatgatccgcctgcctctgccacccaaatgctgggaa
taaaggtgtgtgccactaccacctggcatcaggttttttttttttaatta
ccccagcttttgacttatttattattattttattttattggtatgtgtgt
ggtgtatgcacagttctgctgtattggcaggaaagtatttgattcctccc
ccacccccacctacccccctacccccctctcccaaaaaacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_138591590_138592575
seq2: B6Ng01-059D11.b_50_1032 (reverse)

seq1  GGGAGAAAGGGAAGAGGTCCCATCCTTGGGTGCTTAGTGCAGCGGGGAGG  50
      ||||||||| || ||||||||||||||||||||||||||||||  |||| 
seq2  GGGAGAAAGAGAGGAGGTCCCATCCTTGGGTGCTTAGTGCAGC-AGGAGA  49

seq1  TTTTGGAGGTAGGACCTGGCTCCTCAGACTG-GGACACACCCACCTCCTA  99
        ||||  ||||||||| |||||||||| || | |||||||||| | |||
seq2  GATTGGGAGTAGGACCT-GCTCCTCAGAATGAGAACACACCCACAT-CTA  97

seq1  CTTTGCGAGGCTTTGATCTTTGTGTCTGTGCCTCTGACCTCACTTCA-CA  148
      |||||||| |||||||||||||||||||||| || ||| |||||||| ||
seq2  CTTTGCGAAGCTTTGATCTTTGTGTCTGTGCTTC-GACTTCACTTCACCA  146

seq1  TTGTAAAATGCTTCCGCAGGCGCCCTCTTCCCCTTCCAGCCCAACTTTCC  198
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTGTAAAATGCTTCCGCAGGCGCCCTC-TCCCCTTCCAGCCCAACTTTCC  195

seq1  ATTTCCTCTGTCTTCTGTCCCAGGTGTTAAAGCTGTATTAACTAAAGATG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTCTGTCTTCTGTCCCAGGTGTTAAAGCTGTATTAACTAAAGATG  245

seq1  GGCCAAGGGCACCGGAAAACCAGCTCTTGGCACTTAGGGCGTGTGCCCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGGGCACCGGAAAACCAGCTCTTGGCACTTAGGGCGTGTGCCCCA  295

seq1  GAGCCAGCATACTTCAGGCTTTACATAGCCACTTTTTTTTTTTTTTTTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGCATACTTCAGGCTTTACATAGCCACTTTTTTTTTTTTTTTTTT  345

seq1  TTTTTTTTTTTTTTTTTTTGAGACAGGGTTTGTATAGCCCTGGCTGTCCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTTTTGAGACAGGGTTTGTATAGCCCTGGCTGTCCT  395

seq1  GGAACTCTGTAGACCAGGCTGGCCTTGAACTCTGCAATCAGCCTGCCTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCTGTAGACCAGGCTGGCCTTGAACTCTGCAATCAGCCTGCCTCT  445

seq1  GCCTCCCAAGTGCTGGGATTAAAGGCATGTGGCACCACTGCCCGGCTACG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCAAGTGCTGGGATTAAAGGCATGTGGCACCACTGCCCGGCTACG  495

seq1  TAGCCAATTTAATCTGCTCTAGAAAAAAACCTTTCTTTCAAAAGCCAGGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAATTTAATCTGCTCTAGAAAAAAACCTTTCTTTCAAAAGCCAGGT  545

seq1  ACCTTTTATTCTGTTTCACAGATAGAAACCTTGAAGCTCAGAGAGGTGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTTATTCTGTTTCACAGATAGAAACCTTGAAGCTCAGAGAGGTGAA  595

seq1  ACAATTTGCCCAAGGTCTATTAAACAGAGGAGACTGGACTCTGAATTCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTGCCCAAGGTCTATTAAACAGAGGAGACTGGACTCTGAATTCAG  645

seq1  ACTGCAACTCCTGTTTGTAAGCTCTCAGTCATGTAGGTCAAGTGCCAGGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAACTCCTGTTTGTAAGCTCTCAGTCATGTAGGTCAAGTGCCAGGC  695

seq1  CAAGGAATTGGCATATTCTGTAATGCCAGGAAAGAGGTGAGTAGGAAGCG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAATTGGCATATTCTGTAATGCCAGGAAAGAGGTGAGTAGGAAGCG  745

seq1  AGGCTACCTCACCCTGTCTCCCCTGGAAAACTGGTAGTGACAGACCAATG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTACCTCACCCTGTCTCCCCTGGAAAACTGGTAGTGACAGACCAATG  795

seq1  GATTTTGGATTTGAGCATTTCCCACCAAAGGACATAAATTCTAACAGGTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGGATTTGAGCATTTCCCACCAAAGGACATAAATTCTAACAGGTA  845

seq1  GGAAGTTCGGTGGTAGAGGAAAGCCAGGCATGCCTGAGGCCCAGTCCCCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTCGGTGGTAGAGGAAAGCCAGGCATGCCTGAGGCCCAGTCCCCT  895

seq1  CCATCAAAAACAAACGGACATCCTGACTTCTGACTACTCCTGGAGTAAGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAAAAACAAACGGACATCCTGACTTCTGACTACTCCTGGAGTAAGC  945

seq1  AAGGGATAATTACCCACAATACCTGGGGCTGTGAATTC  986
      ||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATAATTACCCACAATACCTGGGGCTGTGAATTC  983

seq1: chr1_138471133_138471479
seq2: B6Ng01-059D11.g_69_415

seq1  GAATTCATTAGGTTTTTTATTTTGTTCTTTTTTTTTTTTTTTTTGGAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGGTTTTTTATTTTGTTCTTTTTTTTTTTTTTTTTGGAGAC  50

seq1  AGCGTTTCTCTGTGGTATCCCTGGCTGTCCTGGAACTTGCTCTGTAGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTTTCTCTGTGGTATCCCTGGCTGTCCTGGAACTTGCTCTGTAGACC  100

seq1  AGGCTGGCCTTGAACTTATAATGATCCGCCTGCCTCTGCCACCCAAATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCCTTGAACTTATAATGATCCGCCTGCCTCTGCCACCCAAATGC  150

seq1  TGGGAATAAAGGTGTGTGCCACTACCACCTGGCATCAGGTTTTTTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATAAAGGTGTGTGCCACTACCACCTGGCATCAGGTTTTTTTTTTT  200

seq1  TAATTACCCCAGCTTTTGACTTATTTATTATTATTTTATTTTATTGGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACCCCAGCTTTTGACTTATTTATTATTATTTTATTTTATTGGTAT  250

seq1  GTGTGTGGTGTATGCACAGTTCTGCTGTAGTGTCAGGAAAGTATTTGATT  300
      ||||||||||||||||||||||||||||| || |||||||||||||||||
seq2  GTGTGTGGTGTATGCACAGTTCTGCTGTATTGGCAGGAAAGTATTTGATT  300

seq1  CCTCCCCCACCCCCACCTCCACCCCTACCCCCAGCTCCCAAAAAACA  347
      |||||||||||||||||| | |||||||||||  |||||||||||||
seq2  CCTCCCCCACCCCCACCTACCCCCCTACCCCCCTCTCCCAAAAAACA  347