BAC Information

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BAC

Clone NameB6Ng01-059F19
Chromosome1 (Build37)
Map Location 122,491,413 - 122,625,946
singlet/doubletdoublet
Overlap geneEn1
Upstream geneEpb4.1l5, Ptpn4, LOC100042447, LOC666870, LOC100041863, Tmem177, Gm101, Sctr, Tmem37, Dbi, 3110009E18Rik, Steap3, C1ql2, Marco
Downstream geneAI848258, Insig2, Ccdc93, LOC100041926, Htr5b, LOC666656, Ddx18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059F19.bB6Ng01-059F19.g
ACCDH880667DH880668
length1,154252
definitionDH880667|Mus musculus domesticus DNA, BAC clone: B6Ng01-059F19, 5' end.DH880668|Mus musculus domesticus DNA, BAC clone: B6Ng01-059F19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,624,760 - 122,625,946)(122,491,413 - 122,491,664)
sequence
gaattcagaaggagagactcccagtaagataaatagatgctcccccctct
gcacaatattttatacaggtacatggtttggaaaattaggtcaaaggagg
gagggaaaccggtgattcattacctgggcttggaggcaggattacctcat
cagatattcaaaggtaatcagtttcttcccaattgtcatggtaatgaatc
accattgttaataaattgggaagtcagttacacctttgagtggctggata
aaccagagctacctggcatctgtcttcattagaaagaagccaatggggta
gatgtggagacttggatcaggacagcgagcctctgtcctcacgtgacttt
gagggtattccaccttttgcttgacttgatcatcaaggctgtccaagcaa
gaaaacccaagtatgactttaaaccggaagttacccatcagaaatctgtc
agtgttccctggggaagaatcagagatagcagcaatttctttattgactg
cagcaatggtaaggagtaatttctgaacatcacttgcctcatacagaagt
ctctattagaataggtatttcttctctccaaacaaatagaagtaagaaat
agaaaatgagtccaagcataccaccgctgccaccacacctctgaacctcg
agggctcggctacagagatctcatatcagaaaactgaggcccattgagct
caacatggttgtacacatcggaaatcccatcatgcagaatgtggagccag
aaaaatcagaaagccaaggtcagcttcagctacagagtaagtttgaggcc
agcctgaacaacttgagaccttgtctcaagtgaggtggaagatggaccac
ttactttcagatgagcctgggggtctgagttcaaatcccagaacacacat
ggggcaggatggagtaatatacatctgtacccaagcagtcctacacaaga
tcagagcagagcaggagattctagagtactcagtcagtgagcagcagtac
ctcaccttgaaaagatgagcagcccaccgtgtctctgaccaccatatgca
atgatcaaaaacccacactcataccagaaaaggcatgatacccacgcatg
ccgcatgccgccacacatatccattcatcccggaacaattcaccatttgc
atta
tcccactgattacagaaaggttggaaagcctagaccttagaagctgggtt
ctagctgtacagtgtggagagttttcacggtccaccttaacagaggccaa
cgaatatctttccaggaaggctaggctcacccatgggaggtgtgagcgtc
cctcagctaacaaactccccttcccagaccagtagctatctccctcatct
gccagccccagcctccttgggtccccttttgtgtggaggaggggaggaga
gg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_122624760_122625946
seq2: B6Ng01-059F19.b_45_1198 (reverse)

seq1  TAATGCAAATGTGTGATATGTGTCTGTGAATTTGATATGTGATATGTGTG  50
      ||||||||||| ||||  ||| || | ||   ||| ||| ||||||||||
seq2  TAATGCAAATG-GTGAATTGT-TCCGGGA---TGA-ATG-GATATGTGTG  43

seq1  TGCGTGCATGCGTGCATGCGTGTGTATTCATGCCTATTTCTGTGTATGAG  100
       ||| ||||||| ||||||||| ||| |||||||| |||||| |||||||
seq2  -GCG-GCATGCG-GCATGCGTGGGTA-TCATGCCT-TTTCTG-GTATGAG  87

seq1  TGTGGGTGTTTATGATCATTTGCATATGGTGGTCAGAGAACAACGGTGGG  150
      |||||  |||| |||||| ||||||||||||||||||||   ||||||||
seq2  TGTGG--GTTTTTGATCA-TTGCATATGGTGGTCAGAGA--CACGGTGGG  132

seq1  CTGCCTTCCATCTTTTTCAAGGTGGGGTTACTTGCTGCTCACTGACTGAG  200
      ||||    |||| ||||||||||| || ||| ||||||||||||||||||
seq2  CTGC---TCATC-TTTTCAAGGTGAGG-TAC-TGCTGCTCACTGACTGAG  176

seq1  TACTTCTAGAATCCTCCTGCCTCTGCCTCTGATCTTGTTGTAGGACTGCT  250
      ||| |||||||| |||||| ||||| ||||||||||| ||||||||||||
seq2  TAC-TCTAGAAT-CTCCTG-CTCTG-CTCTGATCTTG-TGTAGGACTGCT  221

seq1  TGGGTAACAGATGTATATTACTCCATCCTGCCCCATGTGTGTTCTGGGAT  300
      ||||| ||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGGGT-ACAGATGTATATTACTCCATCCTGCCCCATGTGTGTTCTGGGA-  269

seq1  TTTGAACTCAGACCCCCAGGCTCATCTGGAAAGTAAGTGGTCCATCTTCC  350
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTGAACTCAGACCCCCAGGCTCATCT-GAAAGTAAGTGGTCCATCTTCC  318

seq1  ACCTCACTTTGAGACAAGGTCTCAAGTTGTTCAGGCTGGCCTCAAACTTA  400
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAC-TTGAGACAAGGTCTCAAGTTGTTCAGGCTGGCCTCAAACTTA  367

seq1  CTCTGTAGCTGAAGCTGACCTTGGCTTTCTGATTTTTCTGGCTCCACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGCTGAAGCTGACCTTGGCTTTCTGATTTTTCTGGCTCCACATT  417

seq1  CTGCATGATGGGATTTCCGATGTGTACAACCATGTTGAGCTCAATGGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGATGGGATTTCCGATGTGTACAACCATGTTGAGCTCAATGGGCC  467

seq1  TCAGTTTTCTGATATGAGATCTCTGTAGCCGAGCCCTCGAGGTTCAGAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTTTCTGATATGAGATCTCTGTAGCCGAGCCCTCGAGGTTCAGAGG  517

seq1  TGTGGTGGCAGCGGTGGTATGCTTGGACTCATTTTCTATTTCTTACTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTGGCAGCGGTGGTATGCTTGGACTCATTTTCTATTTCTTACTTCT  567

seq1  ATTTGTTTGGAGAGAAGAAATACCTATTCTAATAGAGACTTCTGTATGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTGGAGAGAAGAAATACCTATTCTAATAGAGACTTCTGTATGAG  617

seq1  GCAAGTGATGTTCAGAAATTACTCCTTACCATTGCTGCAGTCAATAAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGATGTTCAGAAATTACTCCTTACCATTGCTGCAGTCAATAAAGA  667

seq1  AATTGCTGCTATCTCTGATTCTTCCCCAGGGAACACTGACAGATTTCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTGCTATCTCTGATTCTTCCCCAGGGAACACTGACAGATTTCTGA  717

seq1  TGGGTAACTTCCGGTTTAAAGTCATACTTGGGTTTTCTTGCTTGGACAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAACTTCCGGTTTAAAGTCATACTTGGGTTTTCTTGCTTGGACAGC  767

seq1  CTTGATGATCAAGTCAAGCAAAAGGTGGAATACCCTCAAAGTCACGTGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATGATCAAGTCAAGCAAAAGGTGGAATACCCTCAAAGTCACGTGAG  817

seq1  GACAGAGGCTCGCTGTCCTGATCCAAGTCTCCACATCTACCCCATTGGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGGCTCGCTGTCCTGATCCAAGTCTCCACATCTACCCCATTGGCT  867

seq1  TCTTTCTAATGAAGACAGATGCCAGGTAGCTCTGGTTTATCCAGCCACTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTAATGAAGACAGATGCCAGGTAGCTCTGGTTTATCCAGCCACTC  917

seq1  AAAGGTGTAACTGACTTCCCAATTTATTAACAATGGTGATTCATTACCAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGTAACTGACTTCCCAATTTATTAACAATGGTGATTCATTACCAT  967

seq1  GACAATTGGGAAGAAACTGATTACCTTTGAATATCTGATGAGGTAATCCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATTGGGAAGAAACTGATTACCTTTGAATATCTGATGAGGTAATCCT  1017

seq1  GCCTCCAAGCCCAGGTAATGAATCACCGGTTTCCCTCCCTCCTTTGACCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCAAGCCCAGGTAATGAATCACCGGTTTCCCTCCCTCCTTTGACCT  1067

seq1  AATTTTCCAAACCATGTACCTGTATAAAATATTGTGCAGAGGGGGGAGCA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCCAAACCATGTACCTGTATAAAATATTGTGCAGAGGGGGGAGCA  1117

seq1  TCTATTTATCTTACTGGGAGTCTCTCCTTCTGAATTC  1187
      |||||||||||||||||||||||||||||||||||||
seq2  TCTATTTATCTTACTGGGAGTCTCTCCTTCTGAATTC  1154

seq1: chr1_122491413_122491664
seq2: B6Ng01-059F19.g_74_325

seq1  TCCCACTGATTACAGAAAGGTTGGAAAGCCTAGACCTTAGAAGCTGGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACTGATTACAGAAAGGTTGGAAAGCCTAGACCTTAGAAGCTGGGTT  50

seq1  CTAGCTGTACAGTGTGGAGAGTTTTCACGGTCCACCTTAACAGAGGCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTGTACAGTGTGGAGAGTTTTCACGGTCCACCTTAACAGAGGCCAA  100

seq1  CGAATATCTTTCCAGGAAGGCTAGGCTCACCCATGGGAGGTGTGAGCGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATATCTTTCCAGGAAGGCTAGGCTCACCCATGGGAGGTGTGAGCGTC  150

seq1  CCTCAGCTAACAAACTCCCCTTCCCAGACCAGTAGCTATCTCCCTCATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCTAACAAACTCCCCTTCCCAGACCAGTAGCTATCTCCCTCATCT  200

seq1  GCCAGCCCCAGCCTCCTTGGGTCCCCTTTTGTGTGGAGGAGGGGAGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCCCAGCCTCCTTGGGTCCCCTTTTGTGTGGAGGAGGGGAGGAGA  250

seq1  GG  252
      ||
seq2  GG  252