BAC Information

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BAC

Clone NameB6Ng01-059F24
Chromosome1 (Build37)
Map Location 113,005,251 - 113,006,435
singlet/doubletsinglet
Overlap genenone
Upstream geneCdh7, LOC100041429, EG626652, Cdh19
Downstream geneEG666578, Dsel, LOC547247
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059F24.bB6Ng01-059F24.g
ACCDH880677DH880678
length1,1731,210
definitionDH880677|Mus musculus domesticus DNA, BAC clone: B6Ng01-059F24, 5' end.DH880678|Mus musculus domesticus DNA, BAC clone: B6Ng01-059F24, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggtgaggacctggagaaagaggaacactcctccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctta
aaaaattggacatagtactattggaggatccagcaatacctcttctggcc
atatgtccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gccccccaacagatgaatggatacagatcatgtcactcaaacacaaagct
tcagcccttcagtgttttcgtttttggggagaattaaagtgtaaatttct
ggcaggaaccttttctcattgtatgccaattaaagaaaatttgcattact
ggcttttaaaaagctacatagtgaacatttctatattgcaatgccatttg
ttgtaaatcaaagcattccagtaggccaacagaagctttataaggctatg
tttggttatattttttaaagggaccttaataaagttccttagtaaataca
aaattaaggaaacaaagaattacagacaaatgagtttaaagaaatgacca
aatatggaaacatgcaatggtcttatttttatagtcattgtggtaattct
gactatataatcaaaacttttattttttaaattattactcaatgaatcag
atacttattgtgaatagtgaaatggttgtgtctcagaaattaaacaaacc
actgtttagacaaattattgtgagtgttgtttagtaatttaattttgcat
ctaggcctctttcctgtaatattaaatttcactcatgcttttctattttg
ccttagattatccagtctaataagtcacaaaactttacatttataatgga
gtcttaaagcactagagctgggcaatttctaccctctagctacttaatat
gccaataatatccaagttataactatcattttcatgggcagccctttaac
gcagtgggctcccttcatagcca
gaattctgcgcaaaaaccacctggtcttggaatctttctccatttactgg
aaaacttttaaagtctaattttattaccttagtggttatagaagtgtttt
gattctacttgatcttgatttaactttggtaagtggaatctggcaataaa
atcatacatttcttttaaaattctccattttgtgaaatagaagcatttga
agcaagaactacaaattcctttgaatttccttagtttctgtttctatgtc
ctcccttttaactcttattttgtttgtttggatactgtctctgcttttca
cttagtttgactaatatattttataacttgttgattttctttaaaagcca
cctcttagtttcattgccttcttgttttgttctcttcattgctaacttac
tgatttcagcccaaggtacaagtacttcctgcaatctacttctcttgtgt
ctgtatgcttctttttctccagagactgtctgtgtgctttaaaattgcta
gtatgagatctctctaaattcttcatgaaggcacttggtgctacgaaaat
tccacttagcattgtgtctatcacatcccataagttttgttttgttgtgc
cttattttcactgaattctaaaaagtctttaatgtcttttttatttcatc
actttcacaatagtcattaagtagtgtttccaggaatttgtagggtttgt
atagtttacatgcgtttgtgggctttctgttgtctctgttattgttgaag
tacagctttagtccatgatgacccgataaaatacaatgggttatttgtat
ttttttaatcccttgaggcttcttttgtgatggaatatatgaacatttta
gagaatgctctgtgaggtgctgaggacaaggtataatcttttgtgcttgg
gtgaaatgttctgcagatatatgttcaggcatttaacacataatatctgt
tagcttcatatttgctgtttattgtcagtctcaatattttccattaggta
gggtgtgatagtgacgtcacccatattaatattggaggcttgatgtgaat
ttaagcttagtaatactcttttgtgacatggtgcctacattgagagccaa
aatgttacaacagaagtacctgtgaattagcctgaaaaaacaagattcgc
tccactctttggtaatcgggagccttttccagatccaatgaacccaccgt
ggttagatca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_113005251_113006435
seq2: B6Ng01-059F24.b_50_1222

seq1  GAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCACCTGAAAAAATG  50

seq1  TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT  100

seq1  TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC  150

seq1  AGATGCTGGTGAGGACCTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGGTGAGGACCTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG  200

seq1  GGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTTA  250

seq1  AAAAATTGGACATAGTACTATTGGAGGATCCAGCAATACCTCTTCTGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTGGACATAGTACTATTGGAGGATCCAGCAATACCTCTTCTGGCC  300

seq1  ATATGTCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTCCAGAAGATGCCCCAACTGGTAAGAAGGACACATGCTCCACTAT  350

seq1  GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGAT  400

seq1  GCCCCCCAACAGATGAATGGATACAGATCATGTCACTCAAACACAAAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCCAACAGATGAATGGATACAGATCATGTCACTCAAACACAAAGCT  450

seq1  TCAGCCCTTCAGTGTTTTCGTTTTTGGGGAGAATTAAAGTGTAAATTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCCTTCAGTGTTTTCGTTTTTGGGGAGAATTAAAGTGTAAATTTCT  500

seq1  GGCAGGAACCTTTTCTCATTGTATGCCAATTAAAGAAAATTTGCATTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGAACCTTTTCTCATTGTATGCCAATTAAAGAAAATTTGCATTACT  550

seq1  GGCTTTTAAAAAGCTACATAGTGAACATTTCTATATTGCAATGCCATTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTAAAAAGCTACATAGTGAACATTTCTATATTGCAATGCCATTTG  600

seq1  TTGTAAATCAAAGCATTCCAGTAGGCCAACAGAAGCTTTATAAGGCTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAATCAAAGCATTCCAGTAGGCCAACAGAAGCTTTATAAGGCTATG  650

seq1  TTTGGTTATATTTTTTAAAGGGACCTTAATAAAGTTCCTTAGTAAATACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTATATTTTTTAAAGGGACCTTAATAAAGTTCCTTAGTAAATACA  700

seq1  AAATTAAGGAAACAAAGAATTACAGACAAATGAGTTTAAAGAAATGACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAGGAAACAAAGAATTACAGACAAATGAGTTTAAAGAAATGACCA  750

seq1  AATATGGAAACATGCAATGGTCTTATTTTTATAGTCATTGTGGTAATTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGGAAACATGCAATGGTCTTATTTTTATAGTCATTGTGGTAATTCT  800

seq1  GACTATATAATCAAAACTTTTATTTTTTAAATTATTACTCAATGAATCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATATAATCAAAACTTTTATTTTTTAAATTATTACTCAATGAATCAG  850

seq1  ATACTTATTGTGAATAGTGAAATGGTTGTGTCTCAGAAATTAAAACAAAC  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATACTTATTGTGAATAGTGAAATGGTTGTGTCTCAGAAATT-AAACAAAC  899

seq1  CACTGTTTAGACAAATTATTGTGAGTGTTGTTTAGTAATTTAATTTTGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTTAGACAAATTATTGTGAGTGTTGTTTAGTAATTTAATTTTGCA  949

seq1  TCTAGGCCTCTTTCCTGTAATATTTAATTTCACTCATGCTTTTCTATTTT  1000
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TCTAGGCCTCTTTCCTGTAATATTAAATTTCACTCATGCTTTTCTATTTT  999

seq1  GCCTTAGATTATCCAGTTCTTAATTAAGGTCACAAAACCTTTACATTTAT  1050
      |||||||||||||||||   ||||  | ||||||||| ||||||||||||
seq2  GCCTTAGATTATCCAGT--CTAAT--AAGTCACAAAA-CTTTACATTTAT  1044

seq1  AAT-GAGTCTTAAAAGCACTAGAGCTGGGCAAATATCTACCCTCTAGCCT  1099
      ||| ||||||| |||||||||||||||||| ||| |||||||||||| ||
seq2  AATGGAGTCTT-AAAGCACTAGAGCTGGGC-AATTTCTACCCTCTAG-CT  1091

seq1  ACTT-ATATGCCAATAATAT-CAAGTTATAACTTATCATTTTCCATTTGG  1147
      |||| ||||||||||||||| ||||||||||| ||||||||||    |||
seq2  ACTTAATATGCCAATAATATCCAAGTTATAAC-TATCATTTTC---ATGG  1137

seq1  GCAGCTCTTTACTGCAGTGGGGCTCCCCTTCATAGCCA  1185
      ||||| |||||  ||||| ||||| |||||||||||||
seq2  GCAGCCCTTTAACGCAGT-GGGCT-CCCTTCATAGCCA  1173