BAC Information

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BAC

Clone NameB6Ng01-059G06
Chromosome1 (Build37)
Map Location 14,761,855 - 14,893,119
singlet/doubletdoublet
Overlap geneSmt3h2-ps4, EG665407, Trpa1
Upstream geneLOC100039843, EG433273, LOC100039859, LOC100039869, Eya1, LOC665391, Msc
Downstream geneEG269105, LOC100039949, LOC100039959, Kcnb2, Ppia-ps1_109.1, Terf1, Gm106
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059G06.bB6Ng01-059G06.g
ACCDH880687DH880688
length1,073708
definitionDH880687|Mus musculus domesticus DNA, BAC clone: B6Ng01-059G06, 5' end.DH880688|Mus musculus domesticus DNA, BAC clone: B6Ng01-059G06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,892,038 - 14,893,119)(14,761,855 - 14,762,562)
sequence
gaattcttcaagagacctatagggaatatgtttgcagtgcttaaattata
gctattatcatgaaagagatatttatatataaaacctgcacatgaaagat
aataatcacacagaactgaaagccaaaggacccccaaaagttaataaatg
aaagctggaaattttctaaaaacatacaaactgttggatagttaacaaaa
tgtcaggtggaaaaccatacctaacaggggaaaatcttgatttatagatc
aaagccaccagccaaatgacatcaacaggatgaatcataagacaagattc
agcaacagaaacatcacactccactagtgaagatacatagaaacaaaagt
ggcaaggttggaaaaatgtatcatgtaattaaaaccaaagcaagctgcca
cagtgataggactttcagataagtcaggcttgaagccaaacacaaaaagg
acaaaggtcaaaagagaattaatcacaatgttatggctcagctagaatct
gtaaagacccgaggaatgaaaataagacagtaaatggaactttacagaag
tcaatgatccattgagccagtcattcaggagcttgggaacacccaggcgg
gttaccagtccacatcctattagaatcactgggtgaggtagggcattctt
tagaattctttgattgagttaattttgacatccagtggcttctcctaaca
tacttttagaattttaatatggctaagaagcaattatgttaggaaaatcg
ggcctccatgttgttttttagtgaactttctctgacactcaaaaggatgt
tctgaaatttatgtatatacaaaagtcgagagtagttgacggcccaccag
ttctccattaaaggcagatgttgctactcacttcagaatgatgattttat
aggaaagagtgggcttattcaaacatgacaaagtgattttgtggtgtatg
tatttttcctgatttttatatattaaaatatcctactcagagcctgaatt
cttggaatacatttactattctgtggtccaggtttctgaataaggcatct
tggtttcatactattggaataaa
gaattctattggatggggaaataaggttgagtgaaagctggtgttttacc
tcccttcctatagagaagggagaatgagacagagggattgacttgatctc
tctccttagtgacagggattagaactgtgtggatttatgaaagagaacaa
atctctcttctcacacaatgacagggaggcagacagttggactacgcttt
gcctttgcagtgtggttaaacagaaagtaaaaccttgattataaaatata
tattcaaaagtgctcttgtaggaagagtgctgcctcagctgggtgatatc
agtgggctagttctcatggggaggtccatatgagaggtcaggtctcgggt
gggatgtagctgctagaaagcagagggagagctgtgggtaccctgggagc
agggcaggtgttaaggaaaggactgtagtttagtttataattagtttata
aattaaattacagttacagttgttttggataatcaagacaaaaatcaaat
aacaaacacaattgtaattgaccaaggagaggtaagacattgtgtgtggt
tcagcacagctgtaatccattcacttggtaggaagaatgatgctggtagg
ttgtaagctcagggcatcaaggatgaactggtgaggtcttgttggagaag
aagaagaagaagaagaagaagaagaatattataaagaagaaggaggagga
ggaggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_14892038_14893119
seq2: B6Ng01-059G06.b_45_1117 (reverse)

seq1  TTTATTCAAATAAGTATGAAAACCAAAGATGCTGTATTCAGAAA-CTGGA  49
      ||||||| ||| |||||||||  | |||||||  |||||||||| |||||
seq2  TTTATTCCAAT-AGTATGAAA--CCAAGATGCCTTATTCAGAAACCTGGA  47

seq1  -CACAGAATAGTAAAATGTTATATCAAAGAATTCAGGCTCTGAGTAGGAT  98
       ||||||||||| ||||| ||| || ||||||||||||||||||||||||
seq2  CCACAGAATAGT-AAATG-TAT-TCCAAGAATTCAGGCTCTGAGTAGGAT  94

seq1  ATTTTTAAATATAATAAAAAATCAGGAAAAATACAATACAACACAAAATC  148
      ||||| | ||||    |||||||||||||||||| ||||| |||||||||
seq2  ATTTTAATATAT----AAAAATCAGGAAAAATAC-ATACACCACAAAATC  139

seq1  ACTTTGTCATGTTTGAATAAGCCCACTCTTTCCTATAAAATCATCATTCT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTCATGTTTGAATAAGCCCACTCTTTCCTATAAAATCATCATTCT  189

seq1  GAAGTGAGTAGCAACATCTGCCTTTAATGGAGAACTGGTGGGCCGTCAAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAGTAGCAACATCTGCCTTTAATGGAGAACTGGTGGGCCGTCAAC  239

seq1  TACTCTCGACTTTTGTATATACATAAATTTCAGAACATCCTTTTGAGTGT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTCGACTTTTGTATATACATAAATTTCAGAACATCCTTTTGAGTGT  289

seq1  CAGAGAAAGTTCACTAAAAAACAACATGGAGGCCCGATTTTCCTAACATA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAAGTTCACTAAAAAACAACATGGAGGCCCGATTTTCCTAACATA  339

seq1  ATTGCTTCTTAGCCATATTAAAATTCTAAAAGTATGTTAGGAGAAGCCAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTCTTAGCCATATTAAAATTCTAAAAGTATGTTAGGAGAAGCCAC  389

seq1  TGGATGTCAAAATTAACTCAATCAAAGAATTCTAAAGAATGCCCTACCTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTCAAAATTAACTCAATCAAAGAATTCTAAAGAATGCCCTACCTC  439

seq1  ACCCAGTGATTCTAATAGGATGTGGACTGGTAACCCGCCTGGGTGTTCCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGTGATTCTAATAGGATGTGGACTGGTAACCCGCCTGGGTGTTCCC  489

seq1  AAGCTCCTGAATGACTGGCTCAATGGATCATTGACTTCTGTAAAGTTCCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCCTGAATGACTGGCTCAATGGATCATTGACTTCTGTAAAGTTCCA  539

seq1  TTTACTGTCTTATTTTCATTCCTCGGGTCTTTACAGATTCTAGCTGAGCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGTCTTATTTTCATTCCTCGGGTCTTTACAGATTCTAGCTGAGCC  589

seq1  ATAACATTGTGATTAATTCTCTTTTGACCTTTGTCCTTTTTGTGTTTGGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACATTGTGATTAATTCTCTTTTGACCTTTGTCCTTTTTGTGTTTGGC  639

seq1  TTCAAGCCTGACTTATCTGAAAGTCCTATCACTGTGGCAGCTTGCTTTGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCCTGACTTATCTGAAAGTCCTATCACTGTGGCAGCTTGCTTTGG  689

seq1  TTTTAATTACATGATACATTTTTCCAACCTTGCCACTTTTGTTTCTATGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATTACATGATACATTTTTCCAACCTTGCCACTTTTGTTTCTATGT  739

seq1  ATCTTCACTAGTGGAGTGTGATGTTTCTGTTGCTGAATCTTGTCTTATGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCACTAGTGGAGTGTGATGTTTCTGTTGCTGAATCTTGTCTTATGA  789

seq1  TTCATCCTGTTGATGTCATTTGGCTGGTGGCTTTGATCTATAAATCAAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCTGTTGATGTCATTTGGCTGGTGGCTTTGATCTATAAATCAAGA  839

seq1  TTTTCCCCTGTTAGGTATGGTTTTCCACCTGACATTTTGTTAACTATCCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCCTGTTAGGTATGGTTTTCCACCTGACATTTTGTTAACTATCCA  889

seq1  ACAGTTTGTATGTTTTTAGAAAATTTCCAGCTTTCATTTATTAACTTTTG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTGTATGTTTTTAGAAAATTTCCAGCTTTCATTTATTAACTTTTG  939

seq1  GGGGTCCTTTGGCTTTCAGTTCTGTGTGATTATTATCTTTCATGTGCAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCCTTTGGCTTTCAGTTCTGTGTGATTATTATCTTTCATGTGCAGG  989

seq1  TTTTATATATAAATATCTCTTTCATGATAATAGCTATAATTTAAGCACTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATATATAAATATCTCTTTCATGATAATAGCTATAATTTAAGCACTG  1039

seq1  CAAACATATTCCCTATAGGTCTCTTGAAGAATTC  1082
      ||||||||||||||||||||||||||||||||||
seq2  CAAACATATTCCCTATAGGTCTCTTGAAGAATTC  1073

seq1: chr1_14761855_14762562
seq2: B6Ng01-059G06.g_67_774

seq1  GAATTCTATTGGATGGGGAAATAAGGTTGAGTGAAAGCTGGTGTTTTACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTGGATGGGGAAATAAGGTTGAGTGAAAGCTGGTGTTTTACC  50

seq1  TCCCTTCCTATAGAGAAGGGAGAATGAGACAGAGGGATTGACTTGATCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCCTATAGAGAAGGGAGAATGAGACAGAGGGATTGACTTGATCTC  100

seq1  TCTCCTTAGTGACAGGGATTAGAACTGTGTGGATTTATGAAAGAGAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTAGTGACAGGGATTAGAACTGTGTGGATTTATGAAAGAGAACAA  150

seq1  ATCTCTCTTCTCACACAATGACAGGGAGGCAGACAGTTGGACTACGCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCTTCTCACACAATGACAGGGAGGCAGACAGTTGGACTACGCTTT  200

seq1  GCCTTTGCAGTGTGGTTAAACAGAAAGTAAAACCTTGATTATAAAATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTGCAGTGTGGTTAAACAGAAAGTAAAACCTTGATTATAAAATATA  250

seq1  TATTCAAAAGTGCTCTTGTAGGAAGAGTGCTGCCTCAGCTGGGTGATATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAAAAGTGCTCTTGTAGGAAGAGTGCTGCCTCAGCTGGGTGATATC  300

seq1  AGTGGGCTAGTTCTCATGGGGAGGTCCATATGAGAGGTCAGGTCTCGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGCTAGTTCTCATGGGGAGGTCCATATGAGAGGTCAGGTCTCGGGT  350

seq1  GGGATGTAGCTGCTAGAAAGCAGAGGGAGAGCTGTGGGTACCCTGGGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTAGCTGCTAGAAAGCAGAGGGAGAGCTGTGGGTACCCTGGGAGC  400

seq1  AGGGCAGGTGTTAAGGAAAGGACTGTAGTTTAGTTTATAATTAGTTTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGGTGTTAAGGAAAGGACTGTAGTTTAGTTTATAATTAGTTTATA  450

seq1  AATTAAATTACAGTTACAGTTGTTTTGGATAATCAAGACAAAAATCAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAATTACAGTTACAGTTGTTTTGGATAATCAAGACAAAAATCAAAT  500

seq1  AACAAACACAATTGTAATTGACCAAGGAGAGGTAAGACATTGTGTGTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACACAATTGTAATTGACCAAGGAGAGGTAAGACATTGTGTGTGGT  550

seq1  TCAGCACAGCTGTAATCCATTCACTTGGTAGGAAGAATGATGCTGGTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACAGCTGTAATCCATTCACTTGGTAGGAAGAATGATGCTGGTAGG  600

seq1  TTGTAAGCTCAGGGCATCAAGGATGAACTGGTGAGGTCTTGTTGGAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGCTCAGGGCATCAAGGATGAACTGGTGAGGTCTTGTTGGAGAAG  650

seq1  AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGGAGGAGGA  700
      |||||||||||||||||||||||||| |  |  |||||||||||||||||
seq2  AAGAAGAAGAAGAAGAAGAAGAAGAATATTATAAAGAAGAAGGAGGAGGA  700

seq1  GGAGGAGG  708
      ||||||||
seq2  GGAGGAGG  708