BAC Information

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BAC

Clone NameB6Ng01-059G13
Chromosome1 (Build37)
Map Location 188,961,505 - 189,107,930
singlet/doubletdoublet
Overlap geneSpata17, Gpatch2
Upstream geneTgfb2, Rrp15, LOC666832, LOC100042375, D1Pas1
Downstream geneEsrrg, 9330162B11Rik, Ush2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059G13.bB6Ng01-059G13.g
ACCDH880700DH880701
length1,1021,144
definitionDH880700|Mus musculus domesticus DNA, BAC clone: B6Ng01-059G13, 5' end.DH880701|Mus musculus domesticus DNA, BAC clone: B6Ng01-059G13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(189,106,806 - 189,107,930)(188,961,505 - 188,962,677)
sequence
gaattcactataggccacatgaactccattagctgttagaacctttacaa
gggaagccaaagctttgaaacaaagcagccaaaaagatgggagaggcttt
acacataaaaggtataaacacagaagaaaggcaccaagtcggaacagcac
aagccattggctttaccacagccctggagggcatgcgcagttcctacaaa
tgcaacccaaagccagtggcctgatgtgctctcttgaggatgaaatctca
gaagaaactttgaagtacattttattggcaggatcctctactgtgaacga
tccccagaaagaaaattttctcaagtccggagtggctactgatactggaa
aggcctttcctcttctgagatcattttctcaaccttgagacaggccagtt
ctcccgaacttgatgtgtagataagagaggccaacaagtgaacatctgga
agactggactgacctcccagaagccaagtggcaactatcagaaggcaaga
tgaccagtcaaaggcagagaacaaggaagtcacacagattatctgtgaga
aaaccaattaccaaagagaaaggaacgccaccaagacactgctgaagacc
actgtcccaagtacacttctctctcgccccagttgggcgtctgagggtca
ttaaacatggctgaggcaaagatggtcaaaacaactcttcgtgtagctct
tgatacgaatcttaattgtatctacttttacttgaaggtgctacttacat
ttctgtttaaaaagaaacatactaaattgcctgagatgtggacagggagc
acgaggaggggctcacccctcctagcaagagctccagcagtggccagagg
cacgaacatttgtgagactctgggacaggcaatcagcttcacgaacaaga
cctggcctccacactgcaggctattgctggtacacagcacatccagtgca
gctatgctgcccacgggaagagagagagaatatgtcgccttcactgagca
tctgaagctttgtctgatgacagctgtcagctcttactagcatggttctt
ggtggtgcacttgcagtttctgctaattgcacgagcattcagttacagaa
ca
gaattcaataacaggcctttgcgtacagccaccagtaggtggagcagaca
gcataatttattactgagaacaagggcaaaggaatgaaagtcgggttctt
tggaataaaacaaatctgtaaatgagattttcttcaaaggaaatatgccc
tgtatgtgttagatttggtttgactggttactgaatcaaaataaataact
ttattaaataatcaatcttcgcagaaagataaatttacaaatggaggcat
tgcttgcattttactttattcaaatcaactaaaattagctttcctttcaa
aaaaattttacagggacaaggaattttttgatgtgttcatttagtaagga
cgttgaacacaatcctgcttttcaggtggcggggcataacaaatagtatt
ttctaggaaatataattgactaatcctgttatgtctgcagcaacaaatta
accttattactactagtaaatggtgattgattatttatgcaaataagttg
ccatgttcggctttctgattgaaataaacatataaaagaggcactttact
atgacttgaactttttaattaataaagccctgaggggtgtgttaattcac
ccattgcaatattagttatttactcatgtaactcctattagcacaaacat
atttgcttgaataaagatgagataacaataaaactatgaatagctcctga
aactatttttaaaaaatacatcagagtcatactgaaataggcttaaaata
agcttaaattatgcctgtaagtatcaatacatcagcataaccagtctagg
gttattaattcattaaatagcattaatgaattaattattaaatgtagaat
taataaacacattttgctttgcaaattcagcagtgttttcaaagcattgt
tgcttatgttttctttttactacaatataggcacataaaactataggaat
ataatgtcaaccattactattgtacagtgcaattaatattgccactacta
cattgttgaactcccaataacttatgttgtcttcaaagatgctcagatga
cattctttttacaagttcacaaactgtttgtcaaagtaactcttccacaa
aaaataaaaagacttccttgctctgacaaagaactgtgagtctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_189106806_189107930
seq2: B6Ng01-059G13.b_49_1150 (reverse)

seq1  TGTTCTTGTAACTGAAATGGCTCCGTGCCATATTTAGCAGGAAACCTGCA  50
      ||||| ||||||||||   ||| |||||   | |||||||  || |||||
seq2  TGTTC-TGTAACTGAA--TGCT-CGTGC---AATTAGCAG--AAACTGCA  41

seq1  TAGTGCACCACCAAGAGACCATGCTTAGTAGAGAGCCTGACAGCTGGTGC  100
       ||||||||||||||| ||||||| ||||| |||| ||||||||||   |
seq2  -AGTGCACCACCAAGA-ACCATGC-TAGTA-AGAG-CTGACAGCTG--TC  84

seq1  ATCAGACAAAGCCTTCAGATGCTCAGTGAAGGGCGACCATATTCTCCTCC  150
      ||||||||||| |||||||||||||||||| ||||| |||||||| ||| 
seq2  ATCAGACAAAG-CTTCAGATGCTCAGTGAA-GGCGA-CATATTCT-CTC-  129

seq1  TCCTCTTCCCGTGGGCAGCCATAGCTGCACTTGGATGTGCTGTGTACCAG  200
        |||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  -TCTCTTCCCGTGGGCAG-CATAGCTGCAC-TGGATGTGCTGTGTACCAG  176

seq1  C-ATAGCCTGCAGTGTGGAGGCCAGGTCTTGTTCGTGAAGCTGATTGCCT  249
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCCTGCAGTGTGGAGGCCAGGTCTTGTTCGTGAAGCTGATTGCCT  226

seq1  GTCCCAGAGTCTCACAAATGTTCGTGCCTCTGGCCACTGCTGGAGCTCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGAGTCTCACAAATGTTCGTGCCTCTGGCCACTGCTGGAGCTCTT  276

seq1  GCTAGGAGGGGTGAGCCCCTCCTCGTGCTCCCTGTCCACATCTCAGGCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGAGGGGTGAGCCCCTCCTCGTGCTCCCTGTCCACATCTCAGGCAA  326

seq1  TTTAGTATGTTTCTTTTTAAACAGAAATGTAAGTAGCACCTTCAAGTAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTATGTTTCTTTTTAAACAGAAATGTAAGTAGCACCTTCAAGTAAA  376

seq1  AGTAGATACAATTAAGATTCGTATCAAGAGCTACACGAAGAGTTGTTTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATACAATTAAGATTCGTATCAAGAGCTACACGAAGAGTTGTTTTG  426

seq1  ACCATCTTTGCCTCAGCCATGTTTAATGACCCTCAGACGCCCAACTGGGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTTTGCCTCAGCCATGTTTAATGACCCTCAGACGCCCAACTGGGG  476

seq1  CGAGAGAGAAGTGTACTTGGGACAGTGGTCTTCAGCAGTGTCTTGGTGGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGAGAGAAGTGTACTTGGGACAGTGGTCTTCAGCAGTGTCTTGGTGGC  526

seq1  GTTCCTTTCTCTTTGGTAATTGGTTTTCTCACAGATAATCTGTGTGACTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTTCTCTTTGGTAATTGGTTTTCTCACAGATAATCTGTGTGACTT  576

seq1  CCTTGTTCTCTGCCTTTGACTGGTCATCTTGCCTTCTGATAGTTGCCACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTTCTCTGCCTTTGACTGGTCATCTTGCCTTCTGATAGTTGCCACT  626

seq1  TGGCTTCTGGGAGGTCAGTCCAGTCTTCCAGATGTTCACTTGTTGGCCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCTGGGAGGTCAGTCCAGTCTTCCAGATGTTCACTTGTTGGCCTC  676

seq1  TCTTATCTACACATCAAGTTCGGGAGAACTGGCCTGTCTCAAGGTTGAGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCTACACATCAAGTTCGGGAGAACTGGCCTGTCTCAAGGTTGAGA  726

seq1  AAATGATCTCAGAAGAGGAAAGGCCTTTCCAGTATCAGTAGCCACTCCGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATCTCAGAAGAGGAAAGGCCTTTCCAGTATCAGTAGCCACTCCGG  776

seq1  ACTTGAGAAAATTTTCTTTCTGGGGATCGTTCACAGTAGAGGATCCTGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGAAAATTTTCTTTCTGGGGATCGTTCACAGTAGAGGATCCTGCC  826

seq1  AATAAAATGTACTTCAAAGTTTCTTCTGAGATTTCATCCTCAAGAGAGCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATGTACTTCAAAGTTTCTTCTGAGATTTCATCCTCAAGAGAGCA  876

seq1  CATCAGGCCACTGGCTTTGGGTTGCATTTGTAGGAACTGCGCATGCCCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGCCACTGGCTTTGGGTTGCATTTGTAGGAACTGCGCATGCCCTC  926

seq1  CAGGGCTGTGGTAAAGCCAATGGCTTGTGCTGTTCCGACTTGGTGCCTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTGTGGTAAAGCCAATGGCTTGTGCTGTTCCGACTTGGTGCCTTT  976

seq1  CTTCTGTGTTTATACCTTTTATGTGTAAAGCCTCTCCCATCTTTTTGGCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTGTTTATACCTTTTATGTGTAAAGCCTCTCCCATCTTTTTGGCT  1026

seq1  GCTTTGTTTCAAAGCTTTGGCTTCCCTTGTAAAGGTTCTAACAGCTAATG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTTTCAAAGCTTTGGCTTCCCTTGTAAAGGTTCTAACAGCTAATG  1076

seq1  GAGTTCATGTGGCCTATAGTGAATTC  1125
      ||||||||||||||||||||||||||
seq2  GAGTTCATGTGGCCTATAGTGAATTC  1102

seq1: chr1_188961505_188962677
seq2: B6Ng01-059G13.g_68_1211

seq1  GAATTCAATAACAGGCCTTTGCGTACAGCCACCAGTAGGTGGAGCAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAACAGGCCTTTGCGTACAGCCACCAGTAGGTGGAGCAGACA  50

seq1  GCATAATTTATTACTGAGAACAAGGGCAAAGGAATGAAAGTCGGGTTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAATTTATTACTGAGAACAAGGGCAAAGGAATGAAAGTCGGGTTCTT  100

seq1  TGGAATAAAACAAATCTGTAAATGAGATTTTCTTCAAAGGAAATATGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATAAAACAAATCTGTAAATGAGATTTTCTTCAAAGGAAATATGCCC  150

seq1  TGTATGTGTTAGATTTGGTTTGACTGGTTACTGAATCAAAATAAATAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGTGTTAGATTTGGTTTGACTGGTTACTGAATCAAAATAAATAACT  200

seq1  TTATTAAATAATCAATCTTCGCAGAAAGATAAATTTACAAATGGAGGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAAATAATCAATCTTCGCAGAAAGATAAATTTACAAATGGAGGCAT  250

seq1  TGCTTGCATTTTACTTTATTCAAATCAACTAAAATTAGCTTTCCTTTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCATTTTACTTTATTCAAATCAACTAAAATTAGCTTTCCTTTCAA  300

seq1  AAAAATTTTACAGGGACAAGGAATTTTTTGATGTGTTCATTTAGTAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTTTACAGGGACAAGGAATTTTTTGATGTGTTCATTTAGTAAGGA  350

seq1  CGTTGAACACAATCCTGCTTTTCAGGTGGCGGGGCATAACAAATAGTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGAACACAATCCTGCTTTTCAGGTGGCGGGGCATAACAAATAGTATT  400

seq1  TTCTAGGAAATATAATTGACTAATCCTGTTATGTCTGCAGCAACAAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGAAATATAATTGACTAATCCTGTTATGTCTGCAGCAACAAATTA  450

seq1  ACCTTATTACTACTAGTAAATGGTGATTGATTATTTATGCAAATAAGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTATTACTACTAGTAAATGGTGATTGATTATTTATGCAAATAAGTTG  500

seq1  CCATGTTCGGCTTTCTGATTGAAATAAACATATAAAAGAGGCACTTTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTCGGCTTTCTGATTGAAATAAACATATAAAAGAGGCACTTTACT  550

seq1  ATGACTTGAACTTTTTAATTAATAAAGCCCTGAGGGGTGTGTTAATTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTGAACTTTTTAATTAATAAAGCCCTGAGGGGTGTGTTAATTCAC  600

seq1  CCATTGCAATATTAGTTATTTACTCATGTAACTCCTATTAGCACAAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGCAATATTAGTTATTTACTCATGTAACTCCTATTAGCACAAACAT  650

seq1  ATTTGCTTGAATAAAGATGAGATAACAATAAAACTATGAATAGCTCCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTTGAATAAAGATGAGATAACAATAAAACTATGAATAGCTCCTGA  700

seq1  AACTATTTTTAAAAAATACATCAGAGTCATACTGAAATAGGCTTAAAAAT  750
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AACTATTTTTAAAAAATACATCAGAGTCATACTGAAATAGGCTT-AAAAT  749

seq1  AAGCTTAAATTATGCCTGTAAGTATCAATACATCAGCATAACCAGTCTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTAAATTATGCCTGTAAGTATCAATACATCAGCATAACCAGTCTAG  799

seq1  GGTTATTAATTCATTAAATAGCATTAATGAATTAATTATTAAATGTAGAA  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGTTATTAATTCATTAAATAGCATTAATGAATTAATTATTAAATGTAG-A  848

seq1  ATTAATAAACACAATTTTGCTCTGCCAAATTCAGCAGTGTTTTCAAAGCA  900
      |||||||||||| |||||||| || |||||||||||||||||||||||||
seq2  ATTAATAAACAC-ATTTTGCTTTG-CAAATTCAGCAGTGTTTTCAAAGCA  896

seq1  TTGTTTGCCTAATGTTTTCTATCTACTAACAATATTAGGCAACATTAAAA  950
      |||||   || ||||||||| | |||| |||||| ||||| ||| |||||
seq2  TTGTT--GCTTATGTTTTCTTTTTACT-ACAATA-TAGGC-ACA-TAAAA  940

seq1  CTATAGGAATATAATGTCAACACATTACTATTGTACAGTGCAAATTAATA  1000
      ||||||||||||||||||||| ||||||||||||||||||| ||||||||
seq2  CTATAGGAATATAATGTCAAC-CATTACTATTGTACAGTGC-AATTAATA  988

seq1  ATGCCATTACTAAATTGTTGAAACTCCCAATAAACTATGTTGTCTTCTAA  1050
       ||||| ||||| ||||||| ||||||||||||  |||||||||||| ||
seq2  TTGCCACTACTACATTGTTG-AACTCCCAATAACTTATGTTGTCTTC-AA  1036

seq1  AGATGCTACAGATGACATTCTTTTTACAAAGTTCAACAAAACTGTTTGTG  1100
      ||||||| ||||||||||||||||||| |||||||   ||||||||||| 
seq2  AGATGCT-CAGATGACATTCTTTTTAC-AAGTTCA--CAAACTGTTTGT-  1081

seq1  TACAAATAAACTTCTCACAAAAAAAAAAAAAAAAGAACTTTCCCTTGCTA  1150
        ||||  ||| |||  || |||||| |||||    ||||  ||||||| 
seq2  --CAAAGTAAC-TCTTCCACAAAAAATAAAAA---GACTT--CCTTGCT-  1122

seq1  CTGACAATTAGACTGTGAGTCTT  1173
      |||||||  | ||||||||||||
seq2  CTGACAAAGA-ACTGTGAGTCTT  1144