BAC Information

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BAC

Clone NameB6Ng01-059G21
Chromosome1 (Build37)
Map Location 35,951,960 - 36,099,811
singlet/doubletdoublet
Overlap geneLOC666283, LOC100041091, EG666290
Upstream geneLOC666261, LOC100041544
Downstream geneHs6st1, Ugcgl1, LOC100041123, Lincr, Arid5a, 4632411B12Rik, 4930533C12Rik, Lman2l, Cnnm4, Cnnm3, Ankrd23, Ankrd39, Sema4c, 1700024G10Rik, BC050210, EG623414, Cox5b, Actr1b, 4933424G06Rik, Zap70, Tmem131, EG241053, A230074B11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059G21.bB6Ng01-059G21.g
ACCDH880715DH880716
length846951
definitionDH880715|Mus musculus domesticus DNA, BAC clone: B6Ng01-059G21, 5' end.DH880716|Mus musculus domesticus DNA, BAC clone: B6Ng01-059G21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,951,960 - 35,952,805)(36,098,863 - 36,099,811)
sequence
gaattccataagctgaactgccttgattaacgccactgtactggctctta
actcactggctcaccccagttgactcaactcatcttcactacactgaacg
caactgactgattaaaactcaagagatctgtttgcctctgcctcctagaa
ttaaaggtatgtctgtattccaaccagatcacacagacctaggaggtctt
tggatgtgattcctttccacaacagctgtgtggtgattaaaattcctcta
cacgctcctgatactttcataatagttttcacaggaaggacgggtgtaga
ttctgaaaactgggaaatgtaggaaaacacactcacatatacacactccc
catactcctggctcgatgctggtagtttaatgtgttctatgtccatcagt
ggacagcagtatagatgcatggcatttggggtatgtcttaggggtttgct
gctgtgaatagacaccatgaccaagacaactcttataaggacaatattta
actggggctggcttacaggttcagaggttcagtccaatatcatcaaggca
ggaacatggcagcatccaggcaggcatgttgcaggaagagctgagagttc
tacatctacatctgaaagctgttaggagaagactggtttccaggcagcta
ggactaaggtattaaaaatccacaaccacattgacacacctactacaata
aggccacacctccaaatagtgccactccctgggccaagcatatacaagcc
atcacagggtgacaggtgtttgtttttattctatataagctgggtttcct
gcccttcagaacaggcctgtattagcaacttcttgagagggttaag
gaattctcctccacatgcctgtgagccttacccagagttagattaggctc
ccacttttggtctgcagcttcctctgaagctgttgggagatgtggaactt
ctattcactagtattctttactctaactcaggatccagagcccaagctga
agtcactgggagatgtggaacttcttgtgcctgtgggtctaacttggggt
cccactgtggctcttgagacagggcagttcactgtactgcctggacaatg
aaccctagggatcctttgtctccacctcttccactgctgggattacaggt
atacttaggaagatgtatacattcctggggttgatcctctcatttgtaaa
acaatgactttactgactgagtccatccccagccatgggtctcctcttac
aaggtaatctcaccatatcaagttgtctggaggccaaagccttacttggt
gggttcttgtaactcttgctctccatagcacattctctccctgttctgca
gttttggtgagtgagttcatgtgtgttcagtcaaactcctgtgggacttc
tttgtgaccctgattggaagacatttcactgcctgatattcaccaagtga
cactgggccaacgatagtttttctgtgtggtaccttacctgggtgatgaa
gaacaatacacagaaactgcaagcgtttaagccttaagtgatgtgcaagt
tctctatttgtttcctccagaattcaagctctagcagtggcatctttgct
cattgttttctgtgccatcagctctactgtcaagtgcagataggtattcc
tgaggcactgccttctgtgtgggggtctttcactcgaggttttttgttgt
tttggttttttttttggtttttgggtttttgggtttttttatcagatgtt
ggtatttttctttttttaacatcacagatttccgtgacatttcttttgta
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_35951960_35952805
seq2: B6Ng01-059G21.b_48_893

seq1  GAATTCCATAAGCTGAACTGCCTTGCATTCAACTCCACTGTACTGGCTCT  50
      ||||||||||||||||||||||||| ||| ||| ||||||||||||||||
seq2  GAATTCCATAAGCTGAACTGCCTTG-ATT-AACGCCACTGTACTGGCTCT  48

seq1  TAACTCACTGGCTCACCCCAGCTGACTCAACTCATCTTCACTACACTGAA  100
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAACTCACTGGCTCACCCCAGTTGACTCAACTCATCTTCACTACACTGAA  98

seq1  CGCAACTGACTGATTAAAACTCAAGAGATCTGTTTGCCTCTGCCTCCTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAACTGACTGATTAAAACTCAAGAGATCTGTTTGCCTCTGCCTCCTAG  148

seq1  AATTAAAGGTATGTCTGTATTCCAACCAGATCACACAGACCTAGGAGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAGGTATGTCTGTATTCCAACCAGATCACACAGACCTAGGAGGTC  198

seq1  TTTGGATGTGATTCCTTTCCACAACAGCTGTGTGGTGATTAAAATTCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATGTGATTCCTTTCCACAACAGCTGTGTGGTGATTAAAATTCCTC  248

seq1  TACACGCTCCTGATACTTTCATAATAGTTTTCACAGGAAGGACGGGTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACGCTCCTGATACTTTCATAATAGTTTTCACAGGAAGGACGGGTGTA  298

seq1  GATTCTGAAAACTGGGAAATGTAGGAAAACACACTCACATATACACACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTGAAAACTGGGAAATGTAGGAAAACACACTCACATATACACACTC  348

seq1  CCCATACTCCTGGCTCGATGCTGGTAGTTTAATGTGTTCTATGTCCATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATACTCCTGGCTCGATGCTGGTAGTTTAATGTGTTCTATGTCCATCA  398

seq1  GTGGACAGCAGTATAGATGCATGGCATTTGGGGTATGTCTTAGGGGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACAGCAGTATAGATGCATGGCATTTGGGGTATGTCTTAGGGGTTTG  448

seq1  CTGCTGTGAATAGACACCATGACCAAGACAACTCTTATAAGGACAATATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTGAATAGACACCATGACCAAGACAACTCTTATAAGGACAATATT  498

seq1  TAACTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCCAATATCATCAAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTCCAATATCATCAAGG  548

seq1  CAGGAACATGGCAGCATCCAGGCAGGCATGTTGCAGGAAGAGCTGAGAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAACATGGCAGCATCCAGGCAGGCATGTTGCAGGAAGAGCTGAGAGT  598

seq1  TCTACATCTACATCTGAAAGCTGTTAGGAGAAGACTGGTTTCCAGGCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACATCTACATCTGAAAGCTGTTAGGAGAAGACTGGTTTCCAGGCAGC  648

seq1  TAGGACTAAGGTATT-AAAATCCACAACCACAGTGACACACCTACTACAA  699
      ||||||||||||||| |||||||||||||||| |||||||||||||||||
seq2  TAGGACTAAGGTATTAAAAATCCACAACCACATTGACACACCTACTACAA  698

seq1  TAAGGCCACACCTCCAAATAGTGCCACTCCCTGGGCCAAGCATATACAAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCCACACCTCCAAATAGTGCCACTCCCTGGGCCAAGCATATACAAG  748

seq1  CCATCACAGGGTGACAGGTGTTTG-TTTTAATCCATAGAAGCTGGGTTTC  798
      |||||||||||||||||||||||| ||||| || ||| ||||||||||||
seq2  CCATCACAGGGTGACAGGTGTTTGTTTTTATTCTATATAAGCTGGGTTTC  798

seq1  CTGCCCTTCAGAACCAGGCCTGTAATAGCAACTTCTTGAGA-GGTTAAG  846
      ||||||||||||| |||||||||| |||||||||||||||| |||||||
seq2  CTGCCCTTCAGAA-CAGGCCTGTATTAGCAACTTCTTGAGAGGGTTAAG  846

seq1: chr1_36098863_36099811
seq2: B6Ng01-059G21.g_69_1019 (reverse)

seq1  TTACAAAAGAATTGTCACGTATATCTGTGGCTGTTAAATAATG-AAAATA  49
      ||||||||||| ||||||| | |||||| | ||||||| || | ||||||
seq2  TTACAAAAGAAATGTCACGGAAATCTGT-GATGTTAAAAAAAGAAAAATA  49

seq1  CCAACTCTTGATAAAAAAAAACCAAAAAACCAAAAAACAAAAAAAAAACC  99
      |||||   |||| ||||||| ||||||| ||||||| |||||||||||||
seq2  CCAACATCTGAT-AAAAAAACCCAAAAACCCAAAAACCAAAAAAAAAACC  98

seq1  AAACAAACAAAAAACCTCGAGTTGAAAGA-CCCCACACAGAAGGCAGTGC  148
      |||  |||||||||||||||| ||||||| ||||||||||||||||||||
seq2  AAAACAACAAAAAACCTCGAG-TGAAAGACCCCCACACAGAAGGCAGTGC  147

seq1  CTCAGGAATACCTATCTGCACTTGACAGTGGAGCTGATGGCACAG-AAAC  197
      ||||||||||||||||||||||||||||| ||||||||||||||| ||||
seq2  CTCAGGAATACCTATCTGCACTTGACAGTAGAGCTGATGGCACAGAAAAC  197

seq1  AATGAGCAAAGATGCCACTGCTAGAGCTTGAATTCTGGAGGAAAC-AATA  246
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AATGAGCAAAGATGCCACTGCTAGAGCTTGAATTCTGGAGGAAACAAATA  247

seq1  GAGAACTTGCACATCACTTAAGGCTT-AACGCTTGCAGTTTCTGTGTATT  295
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAGAACTTGCACATCACTTAAGGCTTAAACGCTTGCAGTTTCTGTGTATT  297

seq1  GTTCTTCATCACCCAGGTAAGGTACCACACAGAAAAACTATCGTTGGCCC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTCATCACCCAGGTAAGGTACCACACAGAAAAACTATCGTTGGCCC  347

seq1  AGTGTCACTTGGTGAATATCAGGCAGTGAAATGTCTTCCAATCAGGGTCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCACTTGGTGAATATCAGGCAGTGAAATGTCTTCCAATCAGGGTCA  397

seq1  CAAAGAAGTCCCACAGGAGTTTGACTGAACACACATGAACTCACTCACCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGTCCCACAGGAGTTTGACTGAACACACATGAACTCACTCACCA  447

seq1  AAACTGCAGAACAGGGAGAGAATGTGCTATGGAGAGCAAGAGTTACAAGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCAGAACAGGGAGAGAATGTGCTATGGAGAGCAAGAGTTACAAGA  497

seq1  ACCCACCAAGTAAGGCTTTGGCCTCCAGACAACTTGATATGGTGAGATTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCAAGTAAGGCTTTGGCCTCCAGACAACTTGATATGGTGAGATTA  547

seq1  CCTTGTAAGAGGAGACCCATGGCTGGGGATGGACTCAGTCAGTAAAGTCA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTAAGAGGAGACCCATGGCTGGGGATGGACTCAGTCAGTAAAGTCA  597

seq1  TTGTTTTACAAATGAGAGGATCAACCCCAGGAATGTATACATCTTCCTAA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTACAAATGAGAGGATCAACCCCAGGAATGTATACATCTTCCTAA  647

seq1  GTATACCTGTAATCCCAGCAGTGGAAGAGGTGGAGACAAAGGATCCCTAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACCTGTAATCCCAGCAGTGGAAGAGGTGGAGACAAAGGATCCCTAG  697

seq1  GGTTCATTGTCCAGGCAGTACAGTGAACTGCCCTGTCTCAAGAGCCACAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCATTGTCCAGGCAGTACAGTGAACTGCCCTGTCTCAAGAGCCACAG  747

seq1  TGGGACCCCAAGTTAGACCCACAGGCACAAGAAGTTCCACATCTCCCAGT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACCCCAAGTTAGACCCACAGGCACAAGAAGTTCCACATCTCCCAGT  797

seq1  GACTTCAGCTTGGGCTCTGGATCCTGAGTTAGAGTAAAGAATACTAGTGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCAGCTTGGGCTCTGGATCCTGAGTTAGAGTAAAGAATACTAGTGA  847

seq1  ATAGAAGTTCCACATCTCCCAACAGCTTCAGAGGAAGCTGCAGACCAAAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGTTCCACATCTCCCAACAGCTTCAGAGGAAGCTGCAGACCAAAA  897

seq1  GTGGGAGCCTAATCTAACTCTGGGTAAGGCTCACAGGCATGTGGAGGAGA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGCCTAATCTAACTCTGGGTAAGGCTCACAGGCATGTGGAGGAGA  947

seq1  ATTC  949
      ||||
seq2  ATTC  951