BAC Information

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BAC

Clone NameB6Ng01-059K03
Chromosome1 (Build37)
Map Location 41,776,954 - 41,914,320
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc9a2, Mfsd9, Tmem182, Ppia-ps1_352.1, LOC100041441
Downstream geneLOC383634, LOC666582, 2610017I09Rik, Pou3f3, Mrps9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059K03.bB6Ng01-059K03.g
ACCDH880851DH880852
length643395
definitionDH880851|Mus musculus domesticus DNA, BAC clone: B6Ng01-059K03, 5' end.DH880852|Mus musculus domesticus DNA, BAC clone: B6Ng01-059K03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,776,954 - 41,777,596)(41,913,920 - 41,914,320)
sequence
gaattcacactgatagccttccatggtcagtaccattgcctgctaagcca
actcttttgtatgttgggaatggttttccgacttcttaccaccatcattc
atgcatagtgtgtggtttgggaatacctcaacttggtccccataggttcc
ctttaccacagtccactctacctactttaccagccccatggtcttcctag
attgcttctgtagtatctctatttgatttgattcttattttctttttcat
ttttttcttctctattggatattttatttgttttcatttcaaatacattc
aattcactttcctggtcccctgcataagtcccctatcccatcttcttctg
tgagagtgttcccccacccacccacccactcctgccttcctgccatcctg
ccatggcatttccttacactggggaatcgagccttcacaggaccaagagc
ctctctacccattgatgtctggcaagtccatcgctgctacatatgtggct
ggagccatgagtccctccatgtgtactctttggttggtggtttagtcgct
gggagttcttggggtgggggtgggggtgtctggttggttgataatgttcc
tcctgtgtggttgcaaaacccttcagtttcttcagtcttttct
catctctttcagtccttgctgcacataacaccaggaaataccccaatgaa
agaagcagagaatgtctagtaaactttcccagtagacactacatgtattt
taagttatagtactccttagagaaggcacatgtttctatgtagagctata
catcgtgagcactgagtggcgtgagggctgagggcttttgtagacatcac
acacattgcttggagcagcctgagagtcaatatttccagattgttcttat
tctttttacagaatatcacaaagaatatgtagctgcaggggaaagttaga
ctttgaaaactatgtgtagtaccacatcaaagagttgtatgaatcccaga
cactaagatcggtctacatttattttatttgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_41776954_41777596
seq2: B6Ng01-059K03.b_49_691

seq1  GAATTCACACTGATAGCCTTCCATGGTCAGTACCATTGCCTGCTAAGCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTGATAGCCTTCCATGGTCAGTACCATTGCCTGCTAAGCCA  50

seq1  ACTCTTTTGTATGTTGGGAATGGTTTTCCGACTTCTTACCACCATCATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTTGTATGTTGGGAATGGTTTTCCGACTTCTTACCACCATCATTC  100

seq1  ATGCATAGTGTGTGGTTTGGGAATACCTCAACTTGGTCCCCATAGGTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATAGTGTGTGGTTTGGGAATACCTCAACTTGGTCCCCATAGGTTCC  150

seq1  CTTTACCACAGTCCACTCTACCTACTTTACCAGCCCCATGGTCTTCCTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACCACAGTCCACTCTACCTACTTTACCAGCCCCATGGTCTTCCTAG  200

seq1  ATTGCTTCTGTAGTATCTCTATTTGATTTGATTCTTATTTTCTTTTTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTCTGTAGTATCTCTATTTGATTTGATTCTTATTTTCTTTTTCAT  250

seq1  TTTTTTCTTCTCTATTGGATATTTTATTTGTTTTCATTTCAAATACATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTCTCTATTGGATATTTTATTTGTTTTCATTTCAAATACATTC  300

seq1  AATTCACTTTCCTGGTCCCCTGCATAAGTCCCCTATCCCATCTTCTTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCACTTTCCTGGTCCCCTGCATAAGTCCCCTATCCCATCTTCTTCTG  350

seq1  TGAGAGTGTTCCCCCACCCACCCACCCACTCCTGCCTTCCTGCCATCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGTGTTCCCCCACCCACCCACCCACTCCTGCCTTCCTGCCATCCTG  400

seq1  CCATGGCATTTCCTTACACTGGGGAATCGAGCCTTCACAGGACCAAGAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGCATTTCCTTACACTGGGGAATCGAGCCTTCACAGGACCAAGAGC  450

seq1  CTCTCTACCCATTGATGTCTGGCAAGTCCATCGCTGCTACATATGTGGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTACCCATTGATGTCTGGCAAGTCCATCGCTGCTACATATGTGGCT  500

seq1  GGAGCCATGAGTCCCTCCATGTGTACTCTTTGGTTGGTGGTTTAGTCGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCATGAGTCCCTCCATGTGTACTCTTTGGTTGGTGGTTTAGTCGCT  550

seq1  GGGAGTTCTTGGGGTGGGGGTGGGGGTGTCTGGTTGGTTGATAATGTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GGGAGTTCTTGGGGTGGGGGTGGGGGTGTCTGGTTGGTTGATAATGTTCC  600

seq1  TCCTGTGAGGTTGCAAATCCCTTCAGCTTCTTCAGTCTTTTCT  643
      ||||||| ||||||||| |||||||| ||||||||||||||||
seq2  TCCTGTGTGGTTGCAAAACCCTTCAGTTTCTTCAGTCTTTTCT  643

seq1: chr1_41913920_41914320
seq2: B6Ng01-059K03.g_68_468 (reverse)

seq1  CACACACACACACACAAATAAAATAAATGTAGACCGATCTTAGTGTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACAAATAAAATAAATGTAGACCGATCTTAGTGTCTGG  50

seq1  GATTCATACAACTCTTTGATGTGGTACTACACATAGTTTTCAAAGTCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCATACAACTCTTTGATGTGGTACTACACATAGTTTTCAAAGTCTAA  100

seq1  CTTTCCCCTGCAGCTACATATTCTTTGTGATATTCTGTAAAAAGAATAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCCTGCAGCTACATATTCTTTGTGATATTCTGTAAAAAGAATAAG  150

seq1  AACAATCTGGAAATATTGACTCTCAGGCTGCTCCAAGCAATGTGTGTGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCTGGAAATATTGACTCTCAGGCTGCTCCAAGCAATGTGTGTGAT  200

seq1  GTCTACAAAAGCCCTCAGCCCTCACGCCACTCAGTGCTCACGATGTATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAAAAGCCCTCAGCCCTCACGCCACTCAGTGCTCACGATGTATAG  250

seq1  CTCTACATAGAAACATGTGCCTTCTCTAAGGAGTACTATAACTTAAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACATAGAAACATGTGCCTTCTCTAAGGAGTACTATAACTTAAAATA  300

seq1  CATGTAGTGTCTACTGGGAAAGTTTACTAGACATTCTCTGCTTCTTTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGTGTCTACTGGGAAAGTTTACTAGACATTCTCTGCTTCTTTCAT  350

seq1  TGGGGTATTTCCTGGTGTTATGTGCAGCAAGGACTGAAAGAGATGGAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTATTTCCTGGTGTTATGTGCAGCAAGGACTGAAAGAGATGGAATT  400

seq1  C  401
      |
seq2  C  401