BAC Information

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BAC

Clone NameB6Ng01-060B03
Chromosome1 (Build37)
Map Location 139,648,334 - 139,772,014
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667686, EG623818, Nr5a2, Rnu7-ps3, LOC100042567
Downstream geneLOC100043143, Ptprc, LOC100042596, Atp6v1g3, LOC100042600, Nek7, LOC545363, LOC667745, Lhx9, 2310009B15Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060B03.bB6Ng01-060B03.g
ACCDH881160DH881161
length8971,132
definitionDH881160|Mus musculus domesticus DNA, BAC clone: B6Ng01-060B03, 5' end.DH881161|Mus musculus domesticus DNA, BAC clone: B6Ng01-060B03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,771,109 - 139,772,014)(139,648,334 - 139,649,479)
sequence
gaattctttgctacttttgtttcattcaaaaggagatcacactatgcatt
ttggagatatctggcatttattgccgtattgtacaaaaggaatcaaagac
tttagtggtttcatcctcttaaacaaccaaagccaacagctttttcccca
tgtggaactttaaggactaattactaattgctttctttgaaaaaccattt
tgtataatagtttgtagattaagcatcctttgctggattccatagttggt
tccagcagaaacacgagatggccacagtgttcttgcatgtcagtgtgatg
ctcactgcaggtgagttagagacaggggtgggggtggggatccacctagc
agattagtcagactggcatagaacactggagtagaaagtctctatggttt
aaagatgagggggatatactaaaatctgccttgcacttcagaagaagtca
tctgttaacaggcctgagaaggataccaaaatagggagttgtttgttgcc
ccttcatatcactgcttctcaggcagctcacaaaacagcacttaaagaaa
gtactctgaagagaagcaataatattcaaaatgaatagtccaccaaacat
tctctgggctggtttaccaggcagtgctacactgagaacaaagaaaatgc
tgagagttacaggatattagtggggcaccaatctgatgtccttctcacac
ccgagaaacaggtgtgccctgcacaagtgagctgtgctttttttggagtc
tggactttaagctcacaagctcacacaaggcaagttcattccaagttcca
tgctctattttgtgagcttggcattgaaatagtttcagcaattagtagaa
tttttcatgttgctcttcagaactgacagattaagttgtgtgtgtgt
gaattcactaatagacagtttctgtctcactttaccactcaactggagta
ctgctgcgaaccgacagtgtggaggcctgggggcagtggagaacaatgga
aagcagaacagcagctggcatgaccttgtgatccgggatggtgcaacaga
gggtcatagagagcttctctatgattgcagcaacagaagaccagagagag
aaagggagagagggagtgccgagagccacaggacagggagggagagggag
atatgaaagaatggattaacacttatatctaaagccataaagtagctgaa
tatatatgtcattagcttccaattctgactatcggctgtctacaagaaag
taaaaaaaaaataaaagaaagattaaagggatgaaataattaataaggga
cgtaataatctcaaacagacacacacctagcaccaagccaccaaaaataa
ctaaagcaaacagtagcagagatagctgctagtcggggagagccagacag
gaatgcagtgataacagagaacttcagttctttacttctgataatggata
gatcacccagatagaaaagaaagaaaagaacatatttgacagcaaaagag
atgaacctgtcccaccagatacctacagtacattgtattcaagagagaaa
caccatatgttctttccaagcacagttggaacattctccaggaaatctct
cactggtttacaaagcaggtcttagtgactttcaaacaagtgaaatcatt
ttaagtatcttcccagccctgtccccacaaaatcactggaaggaagctac
acttgaccagctgaaagaagagtgaaaattttacacatacatggaaaaag
agcaggaggatctttgcttgaagtgggttattggtaataataataaacaa
ctttggtactgatttatttactttatgtactgtatttcaataatgcactc
tttctagttattagaaaacaagcgttctgatagacagtccctcatgaagc
attccagaaacctcaagtcatggctcacatccatccaatactacccttat
cctgtcgtgtagcagacacagaatggtcaatatggcttccgtgccctgac
tggaaaagcctgaactggttgaattgcatctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_139771109_139772014
seq2: B6Ng01-060B03.b_45_941 (reverse)

seq1  ACACACACACACACACACACACACACTTAATCTGTCAGTTCTGAAGAGCA  50
                  ||||||||||| ||||||||||||||||||||||||||
seq2  ------------ACACACACACA-ACTTAATCTGTCAGTTCTGAAGAGCA  37

seq1  ACATG-AAAATTCTACTAATTGCTGAAACTATTTCAATGCCAAGCTCAC-  98
      ||||| ||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACATGAAAAATTCTACTAATTGCTGAAACTATTTCAATGCCAAGCTCACA  87

seq1  AAATAGAGCATGGAACTTGGAATGAACTTGCCTTGTGTGAGCTTGTGAGC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAGCATGGAACTTGGAATGAACTTGCCTTGTGTGAGCTTGTGAGC  137

seq1  TT-AAGTCCAGACTCC-AAAAAAGCACAGCTCACTTGTGCAGGGCACACC  196
      || ||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTAAAGTCCAGACTCCAAAAAAAGCACAGCTCACTTGTGCAGGGCACACC  187

seq1  TGTTTCTCGGGTGTGAGAAGGACATCAGATTGGTGCCCCACTAATATCCT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCGGGTGTGAGAAGGACATCAGATTGGTGCCCCACTAATATCCT  237

seq1  GTAACTCTCAGCATTTTCTTTGTTCTCAGTGTAGCACTGCCTGGTAAACC  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCTCAGCATTTTCTTTGTTCTCAGTGTAGCACTGCCTGGTAAACC  287

seq1  AGCCCAGAGAATGTTTGGTGGACTATTCATTTTGAATATTATTGCTTCTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGAGAATGTTTGGTGGACTATTCATTTTGAATATTATTGCTTCTC  337

seq1  TTCAGAGTACTTTCTTTAAGTGCTGTTTTGTGAGCTGCCTGAGAAGCAGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGTACTTTCTTTAAGTGCTGTTTTGTGAGCTGCCTGAGAAGCAGT  387

seq1  GATATGAAGGGGCAACAAACAACTCCCTATTTTGGTATCCTTCTCAGGCC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGAAGGGGCAACAAACAACTCCCTATTTTGGTATCCTTCTCAGGCC  437

seq1  TGTTAACAGATGACTTCTTCTGAAGTGCAAGGCAGATTTTAGTATATCCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACAGATGACTTCTTCTGAAGTGCAAGGCAGATTTTAGTATATCCC  487

seq1  CCTCATCTTTAAACCATAGAGACTTTCTACTCCAGTGTTCTATGCCAGTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCTTTAAACCATAGAGACTTTCTACTCCAGTGTTCTATGCCAGTC  537

seq1  TGACTAATCTGCTAGGTGGATCCCCACCCCCACCCCTGTCTCTAACTCAC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAATCTGCTAGGTGGATCCCCACCCCCACCCCTGTCTCTAACTCAC  587

seq1  CTGCAGTGAGCATCACACTGACATGCAAGAACACTGTGGCCATCTCGTGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTGAGCATCACACTGACATGCAAGAACACTGTGGCCATCTCGTGT  637

seq1  TTCTGCTGGAACCAACTATGGAATCCAGCAAAGGATGCTTAATCTACAAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTGGAACCAACTATGGAATCCAGCAAAGGATGCTTAATCTACAAA  687

seq1  CTATTATACAAAATGGTTTTTCAAAGAAAGCAATTAGTAATTAGTCCTTA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTATACAAAATGGTTTTTCAAAGAAAGCAATTAGTAATTAGTCCTTA  737

seq1  AAGTTCCACATGGGGAAAAAGCTGTTGGCTTTGGTTGTTTAAGAGGATGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCACATGGGGAAAAAGCTGTTGGCTTTGGTTGTTTAAGAGGATGA  787

seq1  AACCACTAAAGTCTTTGATTCCTTTTGTACAATACGGCAATAAATGCCAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTAAAGTCTTTGATTCCTTTTGTACAATACGGCAATAAATGCCAG  837

seq1  ATATCTCCAAAATGCATAGTGTGATCTCCTTTTGAATGAAACAAAAGTAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCCAAAATGCATAGTGTGATCTCCTTTTGAATGAAACAAAAGTAG  887

seq1  CAAAGAATTC  906
      ||||||||||
seq2  CAAAGAATTC  897

seq1: chr1_139648334_139649479
seq2: B6Ng01-060B03.g_66_1197

seq1  GAATTCACTAATAGACAGTTTCTGTCTCACTTTACCACTCAACTGGAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAATAGACAGTTTCTGTCTCACTTTACCACTCAACTGGAGTA  50

seq1  CTGCTGCGAACCGACAGTGTGGAGGCCTGGGGGCAGTGGAGAACAATGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCGAACCGACAGTGTGGAGGCCTGGGGGCAGTGGAGAACAATGGA  100

seq1  AAGCAGAACAGCAGCTGGCATGACCTTGTGATCCGGGATGGTGCAACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAACAGCAGCTGGCATGACCTTGTGATCCGGGATGGTGCAACAGA  150

seq1  GGGTCATAGAGAGCTTCTCTATGATTGCAGCAACAGAAGACCAGAGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCATAGAGAGCTTCTCTATGATTGCAGCAACAGAAGACCAGAGAGAG  200

seq1  AAAGGGAGAGAGGGAGTGCCGAGAGCCACAGGACAGGGAGGGAGAGGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAGAGAGGGAGTGCCGAGAGCCACAGGACAGGGAGGGAGAGGGAG  250

seq1  ATATGAAAGAATGGATTAACACTTATATCTAAAGCCATAAAGTAGCTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAAGAATGGATTAACACTTATATCTAAAGCCATAAAGTAGCTGAA  300

seq1  TATATATGTCATTAGCTTCCAATTCTGACTATCGGCTGTCTACAAGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGTCATTAGCTTCCAATTCTGACTATCGGCTGTCTACAAGAAAG  350

seq1  TAAAAAAAAAATAAAAGAAAGATTAAAGGGATGAAATAATTAATAAGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAATAAAAGAAAGATTAAAGGGATGAAATAATTAATAAGGGA  400

seq1  CGTAATAATCTCAAACAGACACACACCTAGCACCAAGCCACCAAAAATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAATAATCTCAAACAGACACACACCTAGCACCAAGCCACCAAAAATAA  450

seq1  CTAAAGCAAACAGTAGCAGAGATAGCTGCTAGTCGGGGAGAGCCAGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCAAACAGTAGCAGAGATAGCTGCTAGTCGGGGAGAGCCAGACAG  500

seq1  GAATGCAGTGATAACAGAGAACTTCAGTTCTTTACTTCTGATAATGGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCAGTGATAACAGAGAACTTCAGTTCTTTACTTCTGATAATGGATA  550

seq1  GATCACCCAGATAGAAAAGAAAGAAAAGAACATATTTGACAGCAAAAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACCCAGATAGAAAAGAAAGAAAAGAACATATTTGACAGCAAAAGAG  600

seq1  ATGAACCTGTCCCACCAGATACCTACAGTACATTGTATTCAAGAGAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCTGTCCCACCAGATACCTACAGTACATTGTATTCAAGAGAGAAA  650

seq1  CACCATATGTTCTTTCCAAGCACAGTTGGAACATTCTCCAGGAAATCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATATGTTCTTTCCAAGCACAGTTGGAACATTCTCCAGGAAATCTCT  700

seq1  CACTGGTTTACAAAGCAGGTCTTAGTGACTTTCAAACAAGTGAAATCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTTTACAAAGCAGGTCTTAGTGACTTTCAAACAAGTGAAATCATT  750

seq1  TTAAGTATCTTCCCAGCCCTGTCCCCACAAAATCACTGGAAGGAAGCTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTATCTTCCCAGCCCTGTCCCCACAAAATCACTGGAAGGAAGCTAC  800

seq1  ACTTGACCAGCTGAAAGAAGAGTGAAAATTTTACACATACATGGAAAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACCAGCTGAAAGAAGAGTGAAAATTTTACACATACATGGAAAAAG  850

seq1  AGCAGGAGGATCTTTGCTTGAAGTGGGTTATTGGTAATAATAATAAACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGAGGATCTTTGCTTGAAGTGGGTTATTGGTAATAATAATAAACAA  900

seq1  CTTTGGTACTGATTTATTTACTTTATGTACTGTATTTTCAATAATGCACT  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTTTGGTACTGATTTATTTACTTTATGTACTGTA-TTTCAATAATGCACT  949

seq1  CTTTCTAGTTATTAAGAAAAACAGCGTTCTGATAGACAGTCCCTCATGAA  1000
      ||||||||||||| ||||||  ||||||||||||||||||||||||||||
seq2  CTTTCTAGTTATT-AGAAAACAAGCGTTCTGATAGACAGTCCCTCATGAA  998

seq1  GCATTCCAGAAACCTCCAAGTCATGGGCCACATCCCATCCAAATTACTAC  1050
      ||||||||||||||| ||||||||||  ||||| ||||||||  ||||||
seq2  GCATTCCAGAAACCT-CAAGTCATGGCTCACAT-CCATCCAA--TACTAC  1044

seq1  CC-TATCCTGTTCCGTGTAGCAAGACACAAGAGTGGTCAATAGTGGCTTC  1099
      || ||||||||  |||||||| |||||| ||| ||||||||| |||||||
seq2  CCTTATCCTGT--CGTGTAGC-AGACAC-AGAATGGTCAATA-TGGCTTC  1089

seq1  CGTGGTCCTGACTGGGAAAAGCCTGGACTGTGTTGTATTTGCATCTT  1146
      ||| | ||||||| ||||||||||| |||| |||| | |||||||||
seq2  CGT-GCCCTGACT-GGAAAAGCCTGAACTG-GTTG-AATTGCATCTT  1132