BAC Information

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BAC

Clone NameB6Ng01-060L16
Chromosome1 (Build37)
Map Location 74,924,002 - 75,057,680
singlet/doubletdoublet
Overlap geneFev, Cryba2, Ccdc108, Ihh, Nhej1
Upstream geneTns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1, Vil1, Usp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2
Downstream geneSlc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik, AW822216, Inha, Stk11ip, Slc4a3, LOC100039069, LOC383531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060L16.bB6Ng01-060L16.g
ACCDH881623DH881624
length1,0991,001
definitionDH881623|Mus musculus domesticus DNA, BAC clone: B6Ng01-060L16, 5' end.DH881624|Mus musculus domesticus DNA, BAC clone: B6Ng01-060L16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,056,571 - 75,057,680)(74,924,002 - 74,924,998)
sequence
gaattcagctttctcctccttcaggtctgatccaagtctggattgggggt
ggggctctatttcctcaggctggtttccctgttatcttactgcaagggga
ggatcaaggtgtgccccttaggagactttaaacagttctgggcaaggtta
aacattcctttctagcctatgactttgcccagagagattttagcttgctc
tcaattttgtgatatgacataagatgcacaattaacaggcacagagttaa
taaaatgattgatatctgcatggactttatagttggccaagcattctccc
catgttgcatttttttttttttaattctagtctttgtgaattaggtcagt
ttttttgttttttgtcccctgcatttttcttccatggattctgcatctca
ttcttcttagcattttgcctttttggatatttcctttttcttctctattc
ctatttctctaacacccctgtccccactttcagagactttcttatttgct
ttcctagaaattccactgtaggacttttgggaactttgacccaccaagag
caagtacatctcagaaaatgtttaaaatgtattctgttcctctcactcat
ctcccaccccaaagtggggcctcaccccatcctgccatcatgttggccaa
gcacgtggggcagctgtggtcaatcccatttataaagctggtaaatatgg
gaccagtttctgtcccctccaaaggtcaatatttgtgcagagtttaattt
taacttaacaagcagttgttttctgcagctgctctggtgtgttgtgttgt
gtgtgctttcctttccttgccactgactgtacacgttttgtgcatgcata
cacaaactctcttttctctctctctctgtctctcttgtctctctctctct
gcctgtccctgtgtgtttctgtgtgtctatgtgtctagattcattttata
gatttagttgtggtcttcagatcctgcagctctggctagtgatctctgtt
ttccttagaacattaagtggagggagctggataaaggacagtgaacttag
gcctttctaagtgagagacgaggtactcttgatctcatgatcttatgtc
gaattcctagcattctggaagccctgggttcaacttccagcaatgggaga
ctatgtcttcattggggcctgagtataacagtggcctcagctgggtggtg
cacgcctttaatcccagcacttgggagacagagacaggtagatttctgag
ttcaaggtcagcctggtctacagagtaagttccgggacagccaaggctat
acagagaaaccccgtctggaaaaaccaaaaccaaaaccaaccaaccaacc
aaacaaacaaaaaccagtggcctcaaccgggcgtggtggagcatgccttt
aattccatcactcgggaggcagaagccggtcgatttctgagttcgaggcc
agtctggtctacagagtgagttccaggacagccagggctgcacagagaaa
ccctgtctcggaaaacagaacagaacagaacagaacagaacagaacagaa
caaaaaaacacaaaaacaaaaacaaacaaacaaacaaacaaaaaccagtg
gcctcaagatagtcatggcagcaggggaactgccagagatgagctgagct
agggaaagtgacagagttttctaagatgctgaggctggactaatctatga
tcagctcaaacaagtgcttgagagagagagagagagagagagagagagag
agagagagaatccatgtgacccccaaggttccacagaacactttgcagat
ccgtggcttggcctctgactttttgtaaggtgagatgtatcagaggatca
cgcggcaagttcattgacacgccacgactgtaactgttcccagtctgtat
caatctcccagactgatagaagaacagaaacaacagagttgggatggata
taaaaatgagatttcataagtgagatcagttagctgaccatcttttcagc
tattatgtaatgactgactgaaatccctttcttcacagcttacagggact
ttcaagggacatcaaggttagagaaggcaccaggcctactctttccccac
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_75056571_75057680
seq2: B6Ng01-060L16.b_48_1146 (reverse)

seq1  GACATAAGGATCATTGAAGATCAAAGAGTACCCTCTGTCCTCTCACCTTA  50
      ||||||| ||||||   ||||| ||||||| |||| || |||||| ||||
seq2  GACATAA-GATCAT--GAGATC-AAGAGTA-CCTC-GT-CTCTCA-CTTA  42

seq1  GAAAAGGCCTAGGTTCACTGTCCTTTATCCAGCTCCCTTCAACTTAATGT  100
      | ||||||||| ||||||||||||||||||||||||| || |||||||||
seq2  G-AAAGGCCTAAGTTCACTGTCCTTTATCCAGCTCCC-TCCACTTAATGT  90

seq1  TCTTAGGGAGACAGAGATTCACTAGCCAAGGGCTGCAGGATCTGAAGACC  150
      ||| ||| | ||||||| ||||||||| || |||||||||||||||||||
seq2  TCTAAGGAAAACAGAGA-TCACTAGCC-AGAGCTGCAGGATCTGAAGACC  138

seq1  ACAACTAAATCTATAAAAATGAATCTAGACACATAGACACACAGAAACAC  200
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACAACTAAATCTAT-AAAATGAATCTAGACACATAGACACACAGAAACAC  187

seq1  ACAGGGACAGGCAGAGAGAGAGAGAC-AGAGAGACAGAGAGAGAGGAGAA  249
      |||||||||||||||||||||||||| ||||||||||||||||||   ||
seq2  ACAGGGACAGGCAGAGAGAGAGAGACAAGAGAGACAGAGAGAGAGAGAAA  237

seq1  AGAGAGTTTGTGTATGCATGCAC-AAACGTGTACAGTCAGTGGCAAGGAA  298
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGAGAGTTTGTGTATGCATGCACAAAACGTGTACAGTCAGTGGCAAGGAA  287

seq1  AGGAAAGCACACACAACACAACACACCAGAGCAGCTGCAGAAAACAACTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGCACACACAACACAACACACCAGAGCAGCTGCAGAAAACAACTG  337

seq1  CTTGTTAAGTTAAAATTAAACTCTGCACAAATATTGACCTTTGGAGGGGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTAAGTTAAAATTAAACTCTGCACAAATATTGACCTTTGGAGGGGA  387

seq1  CAGAAACTGGTCCCATATTTACCAGCTTTATAAATGGGATTGACCACAGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACTGGTCCCATATTTACCAGCTTTATAAATGGGATTGACCACAGC  437

seq1  TGCCCCACGTGCTTGGCCAACATGATGGCAGGATGGGGTGAGGCCCCACT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCACGTGCTTGGCCAACATGATGGCAGGATGGGGTGAGGCCCCACT  487

seq1  TTGGGGTGGGAGATGAGTGAGAGGAACAGAATACATTTTAAACATTTTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGTGGGAGATGAGTGAGAGGAACAGAATACATTTTAAACATTTTCT  537

seq1  GAGATGTACTTGCTCTTGGTGGGTCAAAGTTCCCAAAAGTCCTACAGTGG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTACTTGCTCTTGGTGGGTCAAAGTTCCCAAAAGTCCTACAGTGG  587

seq1  AATTTCTAGGAAAGCAAATAAGAAAGTCTCTGAAAGTGGGGACAGGGGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTAGGAAAGCAAATAAGAAAGTCTCTGAAAGTGGGGACAGGGGTG  637

seq1  TTAGAGAAATAGGAATAGAGAAGAAAAAGGAAATATCCAAAAAGGCAAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAAATAGGAATAGAGAAGAAAAAGGAAATATCCAAAAAGGCAAAA  687

seq1  TGCTAAGAAGAATGAGATGCAGAATCCATGGAAGAAAAATGCAGGGGACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAGAAGAATGAGATGCAGAATCCATGGAAGAAAAATGCAGGGGACA  737

seq1  AAAAACAAAAAAACTGACCTAATTCACAAAGACTAGAATTAAAAAAAAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAAAAAACTGACCTAATTCACAAAGACTAGAATTAAAAAAAAAA  787

seq1  AAATGCAACATGGGGAGAATGCTTGGCCAACTATAAAGTCCATGCAGATA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAACATGGGGAGAATGCTTGGCCAACTATAAAGTCCATGCAGATA  837

seq1  TCAATCATTTTATTAACTCTGTGCCTGTTAATTGTGCATCTTATGTCATA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCATTTTATTAACTCTGTGCCTGTTAATTGTGCATCTTATGTCATA  887

seq1  TCACAAAATTGAGAGCAAGCTAAAATCTCTCTGGGCAAAGTCATAGGCTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAATTGAGAGCAAGCTAAAATCTCTCTGGGCAAAGTCATAGGCTA  937

seq1  GAAAGGAATGTTTAACCTTGCCCAGAACTGTTTAAAGTCTCCTAAGGGGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAATGTTTAACCTTGCCCAGAACTGTTTAAAGTCTCCTAAGGGGC  987

seq1  ACACCTTGATCCTCCCCTTGCAGTAAGATAACAGGGAAACCAGCCTGAGG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTGATCCTCCCCTTGCAGTAAGATAACAGGGAAACCAGCCTGAGG  1037

seq1  AAATAGAGCCCCACCCCCAATCCAGACTTGGATCAGACCTGAAGGAGGAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAGCCCCACCCCCAATCCAGACTTGGATCAGACCTGAAGGAGGAG  1087

seq1  AAAGCTGAATTC  1110
      ||||||||||||
seq2  AAAGCTGAATTC  1099

seq1: chr1_74924002_74924998
seq2: B6Ng01-060L16.g_67_1067

seq1  GAATTCCTAGCATTCTGGAAGCCCTGGGTTCAACTTCCAGCAATGGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGCATTCTGGAAGCCCTGGGTTCAACTTCCAGCAATGGGAGA  50

seq1  CTATGTCTTCATTGGGGCCTGAGTATAACAGTGGCCTCAGCTGGGTGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTCTTCATTGGGGCCTGAGTATAACAGTGGCCTCAGCTGGGTGGTG  100

seq1  CACGCCTTTAATCCCAGCACTTGGGAGACAGAGACAGGTAGATTTCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCTTTAATCCCAGCACTTGGGAGACAGAGACAGGTAGATTTCTGAG  150

seq1  TTCAAGGTCAGCCTGGTCTACAGAGTAAGTTCCGGGACAGCCAAGGCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGGTCAGCCTGGTCTACAGAGTAAGTTCCGGGACAGCCAAGGCTAT  200

seq1  ACAGAGAAACCCCGTCTGGAAAAACCAAAACCAAAACCAACCAACCAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAACCCCGTCTGGAAAAACCAAAACCAAAACCAACCAACCAACC  250

seq1  AAACAAACAAAAACCAGTGGCCTCAACCGGGCGTGGTGGAGCATGCCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAAAACCAGTGGCCTCAACCGGGCGTGGTGGAGCATGCCTTT  300

seq1  AATTCCATCACTCGGGAGGCAGAAGCCGGTCGATTTCTGAGTTCGAGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCATCACTCGGGAGGCAGAAGCCGGTCGATTTCTGAGTTCGAGGCC  350

seq1  AGTCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTGCACAGAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTGCACAGAGAAA  400

seq1  CCCTGTCTCGGAAAACAGAACAGAACAGAACAGAACAGAACAGAACAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTCGGAAAACAGAACAGAACAGAACAGAACAGAACAGAACAGAA  450

seq1  CAAAAAAACACAAAAACAAAAACAAACAAACAAACAAACAAAAACCAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAACACAAAAACAAAAACAAACAAACAAACAAACAAAAACCAGTG  500

seq1  GCCTCAAGATAGTCATGGCAGCAGGGGAACTGCCAGAGATGAGCTGAGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAAGATAGTCATGGCAGCAGGGGAACTGCCAGAGATGAGCTGAGCT  550

seq1  AGGGAAAGTGACAGAGTTTTCTAAGATGCTGAGGCTGGACTAATCTATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGTGACAGAGTTTTCTAAGATGCTGAGGCTGGACTAATCTATGA  600

seq1  TCAGCTCAAACAAGTGCTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCAAACAAGTGCTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  650

seq1  AGAGAGAGAATCCATGTGACCCCCAAGGTTCCACAGAACACTTTGCAGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAATCCATGTGACCCCCAAGGTTCCACAGAACACTTTGCAGAT  700

seq1  CCGTGGCTTGGCCTCTGACTTTTTGTAAGGTGAGATGTATCAGAGGATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTGGCTTGGCCTCTGACTTTTTGTAAGGTGAGATGTATCAGAGGATCA  750

seq1  CGCGGCAAGTTCATTGACACGCCACGACTGTAACTGTTCCCAGTCTGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGGCAAGTTCATTGACACGCCACGACTGTAACTGTTCCCAGTCTGTAT  800

seq1  CAATCTCCCAGACTGATAGAAGAACAGAAAACAACAGAGTT-GGATGGAT  849
      ||||||||||||||||||||||||||| ||||||||||||| ||||||||
seq2  CAATCTCCCAGACTGATAGAAGAACAG-AAACAACAGAGTTGGGATGGAT  849

seq1  ATAAAAATGAGATTTCATAAGTGAGATCAGTTAGCTGACCATC-TTTCAG  898
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATAAAAATGAGATTTCATAAGTGAGATCAGTTAGCTGACCATCTTTTCAG  899

seq1  CTATTATGTAATGACTGACTGAAATCCC-TTCTTCAACAGCTTACAGGGA  947
      |||||||||||||||||||||||||||| |||||| ||||||||||||||
seq2  CTATTATGTAATGACTGACTGAAATCCCTTTCTTC-ACAGCTTACAGGGA  948

seq1  C-TTCAA-GGACACCAAGGTTAGAGAAGCCACCAGGCCTAC-CCTTCCCC  994
      | ||||| ||||| |||||||||||||| |||||||||||| | ||||||
seq2  CTTTCAAGGGACATCAAGGTTAGAGAAGGCACCAGGCCTACTCTTTCCCC  998

seq1  ACT  997
      |||
seq2  ACT  1001